current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: 5OLI Entity 1(prereleased), from PDB1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .
# Score Template Links and tools%idFirst GLAHSSCSPGGDPTAGAAWACFRLDGRTLLRVRGPDAAPFLLGLLTNELPLPSPAAAGAPPAARAGYAHFLNVQGRTLYDVILYGLQEHSEVSGFLLECDSSVQGALQKHLALYRIRRKVTVEPHPELRVWAVLPSSPEACGAASLQERAGAAAILIRDPRTARMGWRLLTQDEGPALVPGGRLGDLWDYHQHRYLQGVPEGVRDLPPGVALPLESNLAFMNGVSFTKGCYIGQELTARTHHMGVIRKRLFPVRFLDPLPTSGITPGATVLTASGQTVGKFRAGQGNVGLALLWSEKIKGPLHIRASEGAQVALAASVPDWWPTVSKLast
1 -29.300IDP01830 gene: gcvT; glycine cleavage system aminomethyltransferase T [Francisella tularensis subsp. tularensis SCHU S4] FTT0407 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  15  28...NYGSQIQEHNNVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDVAKLQE--------NKAQYGCMLNHDAGIVDDLITYKVTD----EHFRIVVNAGNRESDVAWFNQNAQNFDVAITPQTDLAIVAVQGPKAVAVIKRVVTKEIATKWMVARTGYTGEDGFEVILPATQVKLENGAQPAGLGARDTLRLEAGMHLYGADMD-TSTTPLERGLGWSVDLSDEHRDFIGKKAYFAKKAQGVDTKWV-------VLKTKGVLRAGQEIDFDNGEKGYITSGS-KVAIGLAYVPKQADNPVVNIRGKELEVELVKPKFVKNGKSL 357
2 -25.900IDP04614 glycine cleavage system aminomethyltransferase T [Bacillus anthracis str. Sterne] BAS4131 [Bacillus anthracis str. Sterne]  ali follow..  18  31...QFSSIKEEHEAVRTAAGLFDVSHMGEVEVKGVDSLAFLQRVVTNDVSTLKV--------GGAQYTAMCYENGGTVDDLLIYKRGE----EDYLLVINASNIEKDYEWLASHVIGDATVVNVSSEVAQLAIQGPKAEGILQKVVSEDLKEPALVSRTGYTGEDGFEIYCKSEDAAKLEGLKACGLGARDTLRFEATLPLYGQELS-KDITPIEAGIGFA--VKTNKADFFGKATLKEQKENGAPRKLV-------EVIERGIPRTHYPVFIGEEKIGEVTSGTKSIGLALIDVKAVDTEVEIEIRNKRVKAVVVPTPFYKRSK.. 366
3 -5.810IDP00905 gene: murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase STM0126 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  99....................FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDADRELYLSSFQLETTSSLQAAAATVLNVTEDHMDRYPFGLQQY-RAAKLRVYEKAKVCVVNADDALTMPVRGADERNMGDYHLNRQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAVGLPRASSLKALTTFTGLAHRFQLANGVRWSKATNVGSTEAA----NGLHVDGTLHLLLGGDGKSADFSPLTRYLTGDGRDGAQLAALRPEIAQQTETMEEAMRLLAPRVQPGDMVLLSPACASL...... 417
4 -5.630IDP90759 gene: murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia pestis CO92] YPO0553 [Yersinia pestis CO92]  ali follow..  10  99....................FCRENQAPVVAITGSNGKSTVTTLVGEMAKAAGWSVGGGGNIGVPALTLLKQDNQLTLSSFQLETTHSLRASAATILNVTEDHTDRYPLGLQQY-RAAKLRVYENAKVCVVNADDALTMPVRGADSRDVGDYHLNKQQGEIWLRVRGEKVLNTREMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFSGLPHRFQLVHGVRWSKATNVGSTEAA----DGLQVDGTLHLLLGGDGKSADFSGLTHFLQGDGRDGGQLAALRPDVSQLTETMAQAMALVAKVVLPGDRVLLSPACASL...... 417
5 -5.600IDP92577 serine proteinase inhibitor TgPI-2, putative [Toxoplasma gondii ME49] TGME49_008430 [Toxoplasma gondii ME49]  ali follow..  10  1.......................MCPKIFDPQCGVNGKTYANEERVCANVDLAHTGPCDKTEEEAGKAEPVPIHESLGDRRDSHMRRRMNVKEECINKCDWTFMPVCDVTAQTWGNMCELECGGRKPAHPGPCTPAEVEVAAAPVGWRGPSLDQLTKTKTVTVTLASGQKKTCECPVVAAFVCGMDGKTYGAGQHHPGPCKGYDHPTAQEKCPCDKSFTPMDGKTYQNLCYLQCF-GVRKLHDGTCWN............................................................................... 237
6 -5.570IDP02024 gene: murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii RSA 493] CBU_0131 [Coxiella burnetii RSA 493]  ali follow..  100....................FARNVNKPIIAITGSNGKTTVTTVVGLMMKAAGRNVSVCGNIGEPVLEQITPEPDYYLSSFQLETTFSLRSQAATILNISEDHMNR--ATLQDY-LRAKQRIYTDCFIPIVNADEPEIWRHLPFGLNNAADFSLAEHNQKTSIAYQGKILMPIQELKLNARHHLQNALAALALGTAAKIPIENMLHVLRDFSGIRHRCQWVKEIDYSKGTNVGATRAAIESLGQAAKGQLILI-AGGQGKGADFSPLKDVVKRYVKQVAPLLEKTLKEITVIKHADSMNEAVKRSTQAAKAGDIVLLSP........ 417
7 -5.340IDP01454 gene: murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase VC2403 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  10  106....................FAWHVDTPVIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVPALDLISPDVELYLSSFQLETTSSLKLKAAAFLNLSEDHMDR--QGMEDY-RQAKLRIFDHAETAVVNADDTQTFPDHAAGVEQAAQFSLAQHQGREYLFARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVHGIKWSKATNVASTLAA----SGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLGVDGHQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSP........ 418
8 -5.050IDP01725 acetyltransferase [Bacillus anthracis str. `Ames Ancestor`] GBAA2534 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  5........................AERLLIRFEFKDWEAVHEYTSDSDVMKYIPEGVFTEEDTRNNFPVILIGENILVGHIVFHKYFGEHTYEGYASEAAQATLKYGFKEMKLHRIIATCQPENTPSYRVMEKIG................................................................................................................................................................................................ 139
9 -5.040IDP90361 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_021 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  10  111..........LLRISKNPLMIFVLKNAQWMPLSEKDPLPFFVKILRLPLSPAPSHLIKYKGKERTPWSPRTSLNGELITLPS--KDSSPLSEKNILIYFSNNERLAFPLWTSIDTPTGTVIIKTIEM........................................................................................................................................................................................................ 233
10 -5.030IDP01354 gene: trmE; tRNA modification GTPase TrmE VC0003 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  30...........................GIIRVSGPLAAHVAQTVTGRTLR-----------PRYAEYLPFTDEDGQQLDQGIALFFPNPHSEDVLELQGHGGVMDMLIRRIERAFLNDKMDLTQAE--AIADLIDASSEQAAKSALQSLQGEFSKRIHTLVESLIHLRIYVEAAIDFPEEEIDFLADGK-DLQTIIDNLAAVRREANQGAIMREGMKVVIAGRPNAGKSALSGKESAIVTDIAGTTRDVL-HIHIDGMPLHIIDTAGLRDASDAVEKIGRAWEEIRQADRVLFMVDGTTT........................... 318

FFAS is supported by the NIH grant R01-GM087218-01
1 2 7 7 1 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24