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Query: 3kf8_A mol:protein length:220 Protein stn1, from PDB1018

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PLGSKDNRLLYPKTKIDWGPGENHICLKTPFKNFYVIELFHQAPTFDKTIPLFISDINNSPNLYGIYNYIADHLRHVVLVNNYPVNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGEIYNWYDSINVSKKPDRELKVSKITVLSHRPDGLHFEFEQWKKRMEFRKNNLVEPWVFIPTPQRELast
1 -51.600sp|Q9H668|STN1_HUMAN CST complex subunit STN1 OS=Homo sapiens GN=OBFC1 PE=1 SV=2  ali follow..  11  5...........................SSRCEEETPSLLWGLDPVFLAFAKLYIRDILDMKESRQ--------VPGVFLYNGHPIKQVDVLGTVIGVRER--------DAFYSYGVDDSTGVINCICWKKLNTESVSAAEQKTKIEIGDTIRVRGSIRTYREEREIHATTYYKVDDPVW----------NIQIARMLELPTIYRKVYDQPFHSSALEKEE 191
2 -36.100sp|P15927|RFA2_HUMAN Replication protein A 32 kDa subunit OS=Homo sapiens GN=RPA2 PE=1 SV=1  ali follow..  11  44..............................................QHIVPCTISQLLSATL-----------VDEVFRIGNVEISQVTIVGIIRHAE--------KAPTNIVYKIDDMTAAPMDVRQWVDTDDTSS---ENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPL------------EDMNEFTTHILEVINAHMVLSKAN.......... 173
3 -35.800sp|Q13156|RFA4_HUMAN Replication protein A 30 kDa subunit OS=Homo sapiens GN=RPA4 PE=1 SV=2  ali follow..  14  44..............................................QDVVPCNVNQLLSSTV-----------FDPVFKVRGIIVSQVSIVGVIRGAE--------KASNHICYKIDDMTAKPIEARQWFGREKVKQV----TPLSVGVYVKVFGILKCPTGTKSLEVLKIHVL------------EDMNEFTVHILETVNAHMMLDKAR.......... 172
4 -32.700sp|Q96E14|RMI2_HUMAN RecQ-mediated genome instability protein 2 OS=Homo sapiens GN=RMI2 PE=1 SV=2  ali follow..  12  21...............................................PPLKVLAEQLRRDAEGGP---GAWRLSRAAAGRGPLDLAAVWMQGRVVMADRGE------------ARLRDPSGDFSVRGL-------ERVPRGRPCLVPGKYVMVMGVVQACSPEPCLQAVKMTDLS-----------DNPIHESMWELEVEDLHRNI.............. 146
5 -12.200sp|Q96AH0|SOSB2_HUMAN SOSS complex subunit B2 OS=Homo sapiens GN=OBFC2A PE=1 SV=1  ali follow..  15  9...................................................IFIRDIKP-------------------------LKNLNVVFIVLEIG--RVTKTKDGHEVRSCKVADKTGSITISVW----------DEIGGLIQPGDIIRLTGYASMWKGCLTLYTGRGGELQ............................................. 97
6 -10.200sp|Q9BQ15|SOSB1_HUMAN SOSS complex subunit B1 OS=Homo sapiens GN=OBFC2B PE=1 SV=1  ali follow..  12  5...................................................TFVKDIKP-------------------------LKNLNLIFIVLETG--RVTKTKDGHEVRTCKVADKTGSINISVW----------DDVGNLIQPGDIIRLTGYASVFKGCLTLYTGRGGDLQ............................................. 93
7 -10.000sp|Q86WV5|TEN1L_HUMAN CST complex subunit TEN1 OS=Homo sapiens GN=TEN1 PE=1 SV=1  ali follow..  10  23.....................................................................................STLRTFGRLCLYDMIQS----------RVTLMAQHGSDQHQV------LVCTKLVEPFHAQVGSLYIVLGELQHQQDRGSV----VKARVLTCVEGM---------NLPLLEQAIREQRLYKQE........... 117
8 -9.970sp|P14868|SYDC_HUMAN Aspartyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=DARS PE=1 SV=2  ali follow..  14  58.....................................................................................EVVWVRARVHTSR--------AKGKQCFLVLRQQQFNVQALV-AVGDHASKQMVKFAANINKESIVDVEGVVRKVNQKIGSCTQQDVELHVQKIYVISLAEPRLNQDTRLDNRVIDLRTSTSQAVFRLQSGICH. 204
9 -9.650sp|Q6PI48|SYDM_HUMAN Aspartyl-tRNA synthetase, mitochondrial OS=Homo sapiens GN=DARS2 PE=1 SV=1 (Range: 1-300)  ali follow..  15  64.....................................................................................QEVTLCGWIQYRR-----------QNTFLVLRDFDGLVQVII--PQDESAASVKKILCEAPVESVVQVSGTVISRPAGQENPKMPT-EIKVKTAELLNACKKKKTEALRLQYRYLDLRSFQMQYNLRLRSQMVMK 196
10 -9.510sp|Q8NHS9|SPT22_HUMAN Spermatogenesis-associated protein 22 OS=Homo sapiens GN=SPATA22 PE=1 SV=2  ali follow..  237..............................................ASSLRIISAVIESMKYWREHAQKT-----------------FEVLAVLDSAVTPGPYYSK------TFLMRDGKNTLPCVFYEIDR--------ELPRLIRGRVHRCVGNYDQ--KKNIFQCVSVRPASVSEQKTFQAFVKIADVEMQYYINVMN................... 361
11 -9.440sp|O14862|AIM2_HUMAN Interferon-inducible protein AIM2 OS=Homo sapiens GN=AIM2 PE=1 SV=1  ali follow..  14  218.....................................................FLEVNSASRVLDAESDQKVNVPLNIIRKAGETPKINTLGTIVN--LFVVQKVTEKKKNILFDLSDNTGKMEVLGVRNEDTM---------KCKEGDKVRLT-TLSKNGEKLQLTSGVHSTIKVIK.......................................... 338
12 -9.030sp|O43776|SYNC_HUMAN Asparaginyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=NARS PE=1 SV=1  ali follow..  12  126.....................................................................................QRVKVFGWVHRLR-------RQGKNLMFLVLRDGTGYLQCVL-----ADELCQCYNGVLLSTESSVAVYGMLNLTPKGKQ--APGGHELSCDFWELIGLAPAGGDVDVQLNNRHMMIRGENMSKILKARSMVTR. 254

FFAS is supported by the NIH grant R01-GM087218-01
1 2 9 7 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.