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Query: 5OLI Entity 1(prereleased), from PDB1018

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GLAHSSCSPGGDPTAGAAWACFRLDGRTLLRVRGPDAAPFLLGLLTNELPLPSPAAAGAPPAARAGYAHFLNVQGRTLYDVILYGLQEHSEVSGFLLECDSSVQGALQKHLALYRIRRKVTVEPHPELRVWAVLPSSPEACGAASLQERAGAAAILIRDPRTARMGWRLLTQDEGPALVPGGRLGDLWDYHQHRYLQGVPEGVRDLPPGVALPLESNLAFMNGVSFTKGCYIGQELTARTHHMGVIRKRLFPVRFLDPLPTSGITPGATVLTASGQTVGKFRAGQGNVGLALLWSEKIKGPLHIRASEGAQVALAASVPDWWPTVSKLast
1 -123.000sp|Q5T440|CA069_HUMAN Putative transferase C1orf69, mitochondrial OS=Homo sapiens GN=C1orf69 PE=1 SV=1  ali follow..  100  31.LAHSSCSPGGDPTAGAAWACFRLDGRTLLRVRGPDAAPFLLGLLTNELPLPSPAAAGAPPAARAGYAHFLNVQGRTLYDVILYGLQEHSEVSGFLLECDSSVQGALQKHLALYRIRRKVTVEPHPELRVWAVLPSSPEACGAASLQERAGAAAILIRDPRTARMGWRLLTQDEGPALVPGGRLGDLWDYHQHRYLQGVPEGVRDLPPGVALPLESNLAFMNGVSFTKGCYIGQELTARTHHMGVIRKRLFPVRFLDPLPTSGITPGATVLTASGQTVGKFRAGQGNVGLALLWSEKIKGPLHIRASEGAQVALAASVPDWWPTVSK 356
2 -25.500sp|P48728|GCST_HUMAN(removed signalp:1-23) Aminomethyltransferase, mitochondrial OS=Homo sapiens GN=AMT PE=1 SV=1  ali follow..  13  36.VQYRDSHTDSHLHTRQHCSLFDVSHMLQTKILGSDRVKLMESLVVGDIAELRP--------NQGTLSLFTNEAGGILDDLIVTNTSE----GHLYVVSNAGCWEKDLALMQDKV-NQGRDVGLEVDNALLALQGPTAAQVLQAGVADDLRKGCRVTRCGYTGEDGVEISVPVAGAVHLPEVKLAGLAARDSLRLEAGLCLYGNDID-EHTTPVEGSLSWT--LGKRRMDFPGAKVIVPQLKGRVQRRRV-------MCEGAPMRAHSPILNMEGTKIGTVTSGCKNVAMGYVPCERPGTMLLVEVRRKQQMAVVSKMPFVPTNYYT 378
3 -25.000sp|Q9UI17|M2GD_HUMAN(removed signalp:1-23) Dimethylglycine dehydrogenase, mitochondrial OS=Homo sapiens GN=DMGDH PE=1 SV=2  ali   16  42....FEPVGSEYKQVMQRVAVTDLSPFGKFNIKGQDSIRLLDHLFANVIPKV----------GFTNISHMLTPKGRVYAELTVSHQSP----GEFLLITGSGSELHDLRWIEEEAVKGDVEIKNITDLGVLGVAGPQARKVLQKLTSEDLSDDVFAIRISYTGELGWELYHRREDSVAL-GIDNFGTYAMNALRLEKAFRAWGLEMNCDTN-PLEAGLEYF--VKLNKADFIGKQALKQIKAKGLKRRLV............................................................................. 300
4 -20.100sp|Q9UL12|SARDH_HUMAN Sarcosine dehydrogenase, mitochondrial OS=Homo sapiens GN=SARDH PE=1 SV=1  ali   19  1............................................................PPGSTVYTCMLNHRGGTESDLTVSRLAPSHEGDGYYLAMGGAVAQHNWSHITTVL-KSQCQLIDSSELGMISIQGPASRAILQEVLDADLSNEAFAMRLSFVGELGWELHIPKASCVPV-GLINAGYRAIDSLSIEKGYRHWHADLRPDDS-PLEAGLAFT--CKLKSP-FLGREALEQQRAAG-LRRRLVCFTMEDKVPMF----GLEAIWRNGQVVGHVRRADKTIAYGYIHDPSGGPVSLDFVKSGD................. 287
5 -19.000sp|Q9UL12|SARDH_HUMAN Sarcosine dehydrogenase, mitochondrial OS=Homo sapiens GN=SARDH PE=1 SV=1  ali   14  104....HDTIKKECLACRGAAAVFDMSYFGKFYLVGLDARKAADWLFSADVSR---------PPGSTVYTCMLNHRGGTESDLTVSRLAPSHEGDGYYLAMGGAVAQHNWSHITTVL-KSQCQLIDSSELGMISIQGPASRAILQEVLDAD-------LSNEAFPFSTHKLLRAAGHLVRAMRLSFVGELGWELH...................................................................................................................................... 288
6 -18.600sp|Q8NCN5|PDPR_HUMAN Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial OS=Homo sapiens GN=PDPR PE=1 SV=2  ali   14  57....FDIVESEVKCCKEAVCVIDMSSFTKFEITGDQALEVLQYLFSNDLDV---------PVGHIVHTGMLNEGGGYENDCSIARLNK----RSFFMISPTDQQVHCWAWLKKHMPKDNLLLEDVTWYTALNLIGPRAVDVLSELSYAPMTPDHFVMSMTHTGEPGFMLYIPIEYALHV-GIRNAGYYALRSLRIEKFFAFWGQDINNLTT-PLECGRESR--VKLEKG.................................................................................................. 296
7 -16.800sp|Q9UI17|M2GD_HUMAN(removed signalp:1-23) Dimethylglycine dehydrogenase, mitochondrial OS=Homo sapiens GN=DMGDH PE=1 SV=2  ali   16  192....FEPVGSEYKQVMQRVAVTDLSPFGKFNIKGQDSIRLLDHLFANVIPKV----------GFTNISHMLTPKGRVYAELTVSHQSP----GEFLLITGSGSELHDLRWIEEEAVKGGYDVEIKN......................................................................................................................................................................................................... 299
8 -15.500sp|Q9UI17|M2GD_HUMAN(removed signalp:1-23) Dimethylglycine dehydrogenase, mitochondrial OS=Homo sapiens GN=DMGDH PE=1 SV=2  ali   14  2........................DELGVLGVAGPQARKVLQKLTSEDL-------------SDDVFKFLQTKSLKVSNIPVTAIRISYTGELGWELYHRREDSVALYDAI---------------------------------------------------------------NAGQEEGIDNFGTYAMNALRLEKAFRAWGLEMNCDTN-PLEAGLEYF--VKLNKADFIGKQALKQIKAKG-LKRRLVCLTLATD---DVDPEGNESIWYNGKVVGNTTSGSKSLAFAYVPVQLSEQQVEVELLGKNYPAVIIQEPLVLTEPTR 231
9 -14.500sp|Q8NCN5|PDPR_HUMAN Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial OS=Homo sapiens GN=PDPR PE=1 SV=2  ali   14  19........................WKYTALNLIGPRAVDVLSELSYAPMTPDHFCKEMSVGYANGIRVMSMTHTGEP----------------GFMLYIPIEYALHVYNEV---------------------------------------------------------------SVGQKYGIRNAGYYALRSLRIEKFFAFWGQDINNLTT-PLECGRESR--VKLEKG-FIGRDALLQQKQNGVYKRLTMFILDDHDSDLDLWPWWGEPIYRNGQYVGKTTSSARHVCLGFVHNFSEDTGEEQVVTNRGEYEIDILYPVASLFTQK 265
10 -14.100sp|Q9UL12|SARDH_HUMAN Sarcosine dehydrogenase, mitochondrial OS=Homo sapiens GN=SARDH PE=1 SV=1  ali   19  9....................................................................................................................................................................................GLINAGYRAIDSLSIEKGYRHWHADLRPDDS-PLEAGLAFT--CKLKSP-FLGREALEQQRAAG-LRRRLVCFTMEDKVPMF----GLEAIWRNGQVVGHVRRADKTIAYGYIHDPSGGGDYALERMGVTYGAQAHLKSPFDPNNKR 163
11 -13.100sp|Q8NCN5|PDPR_HUMAN Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial OS=Homo sapiens GN=PDPR PE=1 SV=2  ali   16  207....FDIVESEVKCCKEAVCVIDMSSFTKFEITSTGALEVLQYLFSNDLDV---------PVGHIVHTGMLNEGGGYENDCSIARLNK----RSFFMISPTDQQV.............................................................................................................................................................................................................................. 296

FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 1 7 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.