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Query: 5VMA Entity 1(prereleased), from PDB1018

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSNKERFLTLYHQIKSDANGYFSPEGIPYHSIETLICEAPDYGHMTTSEAYSYWLWLEVLYGHYTRDWSKLEAAWDNMEKYIIPVNEDGNDEQPHMSAYNPSSPATYASEKPYPDQYPSQLSGARPAGQDPIDGELKSTYGTNETYLMHWLLDVDNWYKYGNLLNPSHKAAYVNTFQRGQQESVWEAIPHPSQDDKSFGKPNEGFMSLFTKENQVPAAQWRYTNATDADARAIQAIYWAKELGYNNSTYLDKAKKMGDFLRYGMYDKYFQTIGSGKQGNPYPGNGKGACHYLMAWYTSWGGGLGDYANWSWRIGASHCHQGYQNPVAAYALSSDKGGLKPSSATGASDWEKTLKRQLEFYVWLQSKEGAIAGGATNSWNGDYSAYPAGRSTFYDMAYEDAPVYHDPPSNNWFGMQAWPMERVAELYYIFVKDGDKTSENVQMAKSCITKWVNYALDYIFIGSRPVSDEEGYFLDDQGRRILGGTNATVATTSAPGEFWLPGNIAWSGQPDTWNGFQSATGNPNLTAVTKDPTQDTGVLGSLVKAFTFFAAATKLETGNYTALGVRAKDAAAQLLEVAWNYNDGVGIVTEEEREDYDRFFKKEVYFPNGWNGTFGQGNQIPGSSTIPSDPQRGGNGVYTSFADLRPNIKQDPAWSSLESKYQSSFNEATGKWENGAPVFTYHRFWSQVDMATAYAEYHRLINLELast
1 -6.340sp|Q92831|KAT2B_HUMAN Histone acetyltransferase KAT2B OS=Homo sapiens GN=KAT2B PE=1 SV=3  ali   17  6LTYADEY----------AIGYFKKQGFS----EIKIPKTKYVGYIKDYEGATLMGCELNPRIPYTEFSVIIKKQKEIIKKLIERKQAQIRKVYPGLSCFKDGVRQIPIESIPGIRETGWKPSGKEKSKEDQLYSTLKSILQQVKSHQSAW--------------------PFMEPVKRTEAPGYYEVIRFP--------------MDLKTMSERLKNRYYVSKKLFMADLQRV-----CKEYNPPESEYYKCANILEKF-----FFSKIKEAGLIDK.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 232
2 -5.820sp|O60662|KBTBA_HUMAN Kelch repeat and BTB domain-containing protein 10 OS=Homo sapiens GN=KBTBD10 PE=1 SV=2  ali   10  18...................................................................................................................................................................................................................................................................................................................................................................................................................FNPKKGDWKDLAPMKIPRSMKIVIAGGVTEDGLSASVEAFDLTTNKWDVMTEFPQERSSISLVSLAGSLY------AIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLKEIRYASGASCLATRLNLFKLSK.................................................................................................................................................................... 155
3 -5.500sp|Q8NFY9|KBTB8_HUMAN Kelch repeat and BTB domain-containing protein 8 OS=Homo sapiens GN=KBTBD8 PE=2 SV=2  ali   12  4...................................................................................................................................................................................................................................................................................................................................................................................................................YEPQKDYWGFLTPMTVPRIQSIYYIAGTCGNHQRMFTVEAYDIELN--KWTRKKDFPCDQSINPYLKLVLFQNKLHLFVRATQVTVEEHVFRTSRKNSLYQYDDIADQWMKVYE----------TPDRLWDLGRHFECAVAKLYPQCLQK...................................................................................................................................................... 149
4 -5.420sp|Q8WZ60|KLHL6_HUMAN Kelch-like protein 6 OS=Homo sapiens GN=KLHL6 PE=2 SV=3  ali   13  12............................................................................................................................................................................................................................................................................................................RMHEFQSEVFMIIGGCTKDERFVAEVTCLDPLRRSRLEVAKLPLTEHELESENKKWVEFACVTLKNEVYISGGKETQ---------------------HDVWKYNSSINKWIQIEYLNIGRWRKVYVIGGFDGLQRINNVETYDPFHNCWSEAAPLLVHVSSFAATSHKKKLY------VIGGGP--------NGKLATDKTQCYDPSTNKWS-LKAAMPVEAKCINAVSFRDRIYVVGGAMRALYAYSPLEDSWC----------------LVTQLSHERASCGIAP----------CNNRLYITGGRDEKNEVIATVL................................................................................... 277
5 -5.310sp|Q8N616|TM148_HUMAN Putative protein TMEM148 OS=Homo sapiens GN=TMEM148 PE=5 SV=1  ali follow..  16  7...........................................................................................................................................................................................................................................................................................................GRGWNPLDGPTWEVLAMPLPLGPATQVPALFSAALVPPVSSLRPNQMLDWQR-----------LKTPHGAPV-ACSLGLSGEWVPTPCALSILALLGLQLDPLFGLWGCTRTLFWSEWARES.......................................................................................................................................................................................................................................................................................... 116
6 -5.310sp|Q6TDP4|KLH17_HUMAN Kelch-like protein 17 OS=Homo sapiens GN=KLHL17 PE=2 SV=1  ali   12  6...................................................................................................................................................................................................................................................................................................................................................................................................................YDPLTGTWTSVAAMSTRRRYNLYAVGGYDSSSHLATVEKYEPQVNVWSPVASMLSRRSSAGVAVLEGALY------VAGGN---------DGTSCLNSVERYSPKAGAWESVAPMNIRRS------------THDLVAMDGWLYAVGGNDGSSSLNSIEKYNPRTNKWVAASCMFTRRSSVGVAV----------LELLNFPPPSSPTLSVSSTSL.................................................................................... 192
7 -5.120sp|P26640|SYVC_HUMAN Valyl-tRNA synthetase OS=Homo sapiens GN=VARS PE=1 SV=4  ali   11  3.............................AAVTEAFVRLHEEGIIYRSTRL----WSCTLNSAISDIEVDKKELTGRTLLSVPGYKEKVEFGVLVSFAYKVQGSDS-DEEVVVATTRIETMLGDVAVAVHPKDTRYQHLKGKNVIHPF--VFDVDMDFGTG----------------------AVKITPAHDQNDYEVGQRHG-AISIMDSRGALINVPPPFLGLPRFEARKAVLVALKER-IEDNPMVVPLCNRSKDVVEPLLRPQWYVRCGEMAQAASAAVTRGDLRILPEAHQRTWHAWMDNIREWC----SRQLWWGHRIPA......................................................................................................................................................................................................................................................................................................................................................................................... 283
8 -5.060sp|Q96Q82|TIGA1_HUMAN Putative protein TIGA1 OS=Homo sapiens GN=NCRNA00219 PE=2 SV=1  ali follow..  26  36....................................................................................................................................................................................................................................................................................................LLWFLLW---VLWDGAWLWPRGLSRRGAGRGN---AATLSLVSRLRRPVSESGAVNKGSGLASGLRSHVWKRGASS............................................................................................................................................................................................................................................................................................................................................... 106
9 -4.980sp|O43280|TREA_HUMAN(removed signalp:1-23) Trehalase OS=Homo sapiens GN=TREH PE=1 SV=2  ali follow..  15  145.....RFVEFY-------DSYWVMEGL--GMLQNFLDLVKTYGHVPNGGRVYYLTLMMDCYLTHTNDTAFLQENIETLALELDFWTKNRTVSVSLEGKNYLLNRYYVPYGGPRPESYSKDVELADTLPEGDLWAELKAGAESGWDFSSRWLIGGPNPNSLSGIRTSKLVPVDLNAFLCQAEEL----------------------MSNFYSRLGNDSQATKYRILRSQRLAALNTVLWDE--------------QTGAWFDYDLEKK-----------------KKNREFYPSNLTPLWAGCFSD----------PGVADKALKYLEDNRILTYQYGIPTSLQKTGQQW-------------------------------------------------DFP-------NAWAPLQDLVIRGLAKA---------PLRRAQEVAFQLAQNWIRTNFDV---------------YSQKSAMYEKYDVSNGGQPGGGGEYEVQEGFGWTN.................................................................................................................................................................................................... 517
10 -4.960sp|Q96S16|JMJD8_HUMAN JmjC domain-containing protein 8 OS=Homo sapiens GN=JMJD8 PE=2 SV=1  ali follow..  12  122...................................................................................................................................................................................................................................................................................................................................................................................................TYAEFVQQYAFVRPVILQGLTDNSRFRALCSRDRLLASF-RVVRLSTANTYSYHKVDLPFQEYVEQLLHPQ--DPTSLGNDTLYFFG---------DNNFTEWASLFRHYSPPPFGLLGTAPAYSFGIAGAGSGVPFHWHGPGYSEVIG-----RKRWFLYPPEKTPEFHPNKTTLAWLRDTYPAL------PPSARPLECTIRAGEV-------LYFPDRW.............................................................................................. 316

FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 1 7 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.