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Query: 2e3c_A mol:protein length:291 Pyrrolysyl-tRNA synthetase, from PDB1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSSSSGLVPRGSHMASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMVYGDTLDVMHGDLELSSAVVGPIPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRAARSGSYYNGISTNLLast
1 -3.610PB000716 Q60CS7_METCA/1-294 PB000716; Pfam-B_716;  ali follow..  2.................................................PKKTDIAIAGPSFEDLKQTNAHGAEYWSARELQPLLGYSQWRRFEQAIERAITSCKESGNSPEHHFAGAGKPITGG-AVQVVDDYHLSRFACYLIAQNGDPRK-IAQAQKYFAIQTRRQELSDQAAADLERLELRKQTAEEFKALSGAAQQAGVQ................................................................................. 158
2 -2.870PB014998 gi|86133284|ref|ZP_01051866.1| hypothetical protein MED152_01230 [Tenacibaculum sp. MED152]gi|85820147|gb|EAQ41294.1| hypothetical protein MED152_01230 [Polaribacter dokdonensis MED152]  ali follow..  2......SILKITEELQNLGNAGKDNRQRVANIVLENKELFEPLLEVTFQVDEPISVKAAWVLEWICTHHQLSWMIPHLTFFTENLKNLTFDSAIRPCAKICEHLANAYYSKRDNEFKSKLKNEHIQEI-------IETGFDWLITPQKIAVRAYTMNTLYLFGLENDWVHPELKHL--IETKIIHESKGTKARGKHILNLI.................................................................................... 187
3 -2.250PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  45.............................TNQMVRALMLDDATAAKFTPIYEKYLKE----------------LRECRMMNFKPRARKDAAQGTEANTAKETPKPVMTDAEIAKMLKDQFAQSRKMLIREKYYNEFSKILSQKQI-----MKIYQQEKSNMNKFRKEFDRRK................................................................................................................. 167
4 -2.140PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)  ali follow..  10  47...................QLSSQQNEQVASICDYFQEQMKVANSSKKNSDQKVVYGNLKLMKNTLTEKQYSDYLRLMALTLR.......................................................................................................................................................................................................... 113
5 -1.870PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;  ali follow..  13  13...........................................................................................DTGTPVPGPGGMAVTYEQVATGGLPVAGLERPVVPRLSAGLK------LHGEYQGSGFTEPKYIAGQVVQLSRLGSRDIETIAHRVSGRFGREVSADNVRYLIEQKLDPLGV.................................................................................. 131
6 -1.830PB078508 A6TV41_9CLOT/1-155 PB078508; Pfam-B_78508;  ali follow..  1................................METIKFNSEAHELFYKEMLARTNQTDVYYKAFFYCMGICETTRKHIEDLFDFLHQPYQTGTSYKVTRAYNLWNGYVEEGTESLTTPSSLFACEYAAEFHQAIKIRFSEYYRERDFEKSSLRKQIKDLTEKNVIESTNAKEHSEIE............................................................................................................ 155
7 -1.490PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;  ali follow..  11  3.........................................NLDVLFERLSRSSFRRRFRLGVQEQQYLANKGMETILEHGKDFIAQR-----QTPC-HPVFLAQHATGTCCRGCIEKWHRIEAGKSLSQEEQAYILDVILQKEVPPKKTKAATLNLPKKRKSKAEDVQGSLFPEIE............................................................................................................ 150
8 -1.390HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;  ali follow..  45.....................................................LSDDVWQEVDAFYKLDNCPIRNEFAEKALRQYCGRLHAERTGAYLPRAGVLEGTLGVFGERLGRLLLKLAVEHNMTNHLLGGYSKMRGSSVREVSATHGTISFKDVMVFYKED....................................................................................................................... 167
9 -1.290HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  12  12....LWGYITMKKMIAYCG-LDCEKCDAYIATINDNQELRKKTAKLWAELNNAPILPEHINCQGCRVDGIKTVFCDNMCGIRQCALEKGVATCDLERCPTVGEILENNPSALKNL.......................................................................................................................................................................... 125
10 -1.250PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  61MGSTCFVYLDEDAGKSVAPYMSQPLETAADFIGEEEDVAEEEVECKLPLEEMRMLKEEQEELDGTYPAVDAVSRVVTPDDLDNAGN----------VLFKLNDADKDEEKSLRAALTLHTIRETDLF-QVENKNVIDSLMGKYLDGNGNPLS----VRKTKSVVPVSDGWKQY................................................................................................................ 223

FFAS is supported by the NIH grant R01-GM087218-01
1 3 0 6 1 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ma H, Xiong H, Liu T, Zhang L, Godzik A., Zhang Z. Aggregate formation and synaptic abnormality induced by DSCR1. J Neurochem. 2004 Mar;88(6):1485-96.