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Query: 3a5y_A mol:protein length:345 Putative lysyl-tRNA synthetase, from PDB1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSSSSGLVPRGSHMSETASWQPSASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCPAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQASLAQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVDRALast
1 -2.850PB008806 Q5L9W8_BACFN/1-127 PB008806; Pfam-B_8806;  ali follow..  10  55................................................................................................................................................................................................................................................RIKPTDKNKLFLNINHINVSDWFKEQLNKLNQSVRMKRQKIVRVQSSNDSILLDFSKKVKFNAAL.................................. 120
2 -2.760PB034883 _HOMD.0130261_ bfor_c_1_4664 Tannerella forsythia ATCC 43037 [1809083 - 1810348] ORF  ali follow..  10  124...ERLQQNFIGYFREAMYKRHKNSSTSILVNWKRAMDFLKMYAGEN-FFKIDNAFAE-----------------------EYKRFLLTAP........................................................................................................................................................................................................................................................ 189
3 -2.680PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  107.................................................................................................................................................................................................................................LTQWPVQIKLA----PVNAPYFDGAKLLIAADCTAYAYASFHEKFIKGHVTLDSVDYSEKLTEIIRRNDIQSVTIVRMEVPCCGGLEMAAKKALQDSGKFIPWQVATI...... 216
4 -2.670HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000;  ali follow..  12  1...........................................LEDGDFVKLSNLTIGYTLPIRNNKYMKSLRYVSGNNLFCITGYSGLDPELDISNVQAPGVEDTYPTTRSF.................................................................................................................................................................................................................................. 73
5 -2.020PB044822 Q89ZL7_BACTN/1-147 PB044822; Pfam-B_44822;  ali follow..  12  48..YNDDDEELANVMIE---EWATYDGDDFMENVKPNLKSTLCRMKDAGDFD-------------TILKPYSFVLVDEDKETVAELLLIDDDTLLVDDELLKGLDK--ELDEFLKN................................................................................................................................................................................................................................ 144
6 -1.980HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;  ali follow..  12  8......................................................................................................FDELLERIRDIRASEKRVYRK----VKEIFALSVDYDSKSQVAQSFFKSVQNKLEYPELIAKRADASKDNMGLTSFKGVKVRRGDVTVAKNYMTHEEISTLNLIVNMYLDYAELQAKGHIPMHMADWESKLGDF---------------LRFNGREVLENFGTVKEVAEKLALEQYEQYDTHRRALEAADDVDELTADVK..................................... 196
7 -1.850PB044863 Q5LB69_BACFN/1-105 PB044863; Pfam-B_44863;  ali follow..  16  15.............................................................................................................................................................................................................................................EISEENLVTIEKYSLF---QHLIDSNGIVDEAVLEKLKLNIRSLIASQEEDSKDLLDLCIDVIYHNNMK-----AFGLQQLIKLYLTWLSKQE......... 99
8 -1.600PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)  ali follow..  14  107..........................................................................................PIRYVCEMFIDRVS----ASKNYQKEKYTDK-----SALEYYEKSVDHYMIHPDTKAMLEYLLVMLSVKGEEYTYSYIKK......................................................................................................................................................................... 177
9 -1.600PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali follow..  107.....................................................AIMFEDTQNGDYDYNDLIIHVKNTASNHAYQHPTETWQTIEIQ-PIALGSTKTIKLGCILSDGSTHMISDDVRTDL-------------GGRQGFINTVNDNDPIRYKLASTNIKNYAMPKKEKTSAAWVAWFIEVDGKRMYAASSDIDYKSYDMVNKENMPYGLAVSNGNGTFSYPQEKNSLFETYPG-------FSDWIKVSSIGSFQKELVYKYCSGGIIGEDGKSHK....................................................... 319
10 -1.540PB000790 _Gut.Meta.Jp.0111831_ gi|163310496|dbj|BABD01000203.1||3 (- 2591:4589~0 complete)  ali follow..  236.....................................................................................FLLA--EAAEYGWISNITPKEA-----YELG----------SSFEYFGVSEYADQYINSTTRNRLGTSVAFDDTVEPTSEVMTYRDGYTNTDQIQEVVYNYPTASKTLYGKAMNDHLTKIIAQMPYQVLEIWNDHRR----LGLPFFEIPANESDLQWDFYPQRMLDNADPENYQKAVELLGGSDVIITPL............................................................... 435

FFAS is supported by the NIH grant R01-GM087218-01
1 2 8 4 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.