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Query: 3hrk_A mol:protein length:456 Histidyl-tRNA synthetase, from PDB1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAMGTLEAQTQGPGSMQKNMVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKGGHRVALRPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGLSSKDVGIKVNSRKVLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEIAQRVGEEHEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFEGFDREGKFRALCGGGRYDNLLTTYGSPTPIPCAGFGFGDCVIVELLQEKRLLPDIPHVVDDVVIPFDESMRPHALAVLRRLRDAGRSADIILDKKKVVQAFNYADRVGAVRAVLVAPEEWERGEVQVKMLREGTGKEEGGAERGFAVPLDRLVLast
1 -2.940HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  10  1........................................................................................................................................YRYYETRYADCVNGVGNAASPVGAYASSTEWNGYGLSYTTFTQEIQGQPEISVNIDSETGAPQAYATFNVKVTNTGKVPGKTSVQIYGQAPYTEGGLEKVAIQL----------------LNFEKSSEL-----APGASEIVSVKVD-LQYIASYDMEHDNGDGTTGTY--VLDPGTYYFAAGN-GAHDALNNILVLQGADESKMVGTGSAAAAVAQEITEDLISRTAFSVSKTGEKISNQIPYADWNYYQPGEVTYLTRADWAGTFPKTYDQMTLTSEKLENSNLMFYQMFGLDFDDPKWDELLDKMTLEEAQ 321
2 -1.950PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  49..................................TSDLERRRYLILRRKTRKVWPYAKLASERLSELNARLASIKSKSERRKYTKIVQKY----IEEQFAAELKKLTRTEGQILVKLIHRQTGVTTFQLIKNLRSGWRAWYDTTAGLFDIENNREDFLIEDILQRSFQRNILDNQPSVLNIDYFEASS...................................................................................................................................................................................................................................................................... 207
3 -1.700PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;  ali follow..  14  2..................................................................................................................................................................................................................................................................................................................TLLG----DKTASPYDTGTPVPGPGGMAVTYEQVATGGLPVAGLERPVVPRL----------SAGLKLHGEYQGSGFTEPKYIARRGDGQVVQLSRLLHLVASSVDGSRDIET---IAHRVSGRFGREVSADNVRYLIEQ.... 124
4 -1.570PB021443 Q5LG43_BACFN/1-226 PB021443; Pfam-B_21443;  ali follow..  23..........................................................................................................................................................................................................................................................................................................................KNLFNKYNDMKGVSSVYISKAMMELNPNLLYIGKVAEHLNSVQVLSTHDNKVREEMAKDIRSLVQSSKYELLMKQKSTVSGSEVYVNRKGSVKELIMVMNGASSLKFVYME----GDMTTDDIKKLMLYQSTSQ.. 157
5 -1.520HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;  ali follow..  12  117................................................................................................................................................................................................................................................................TQIAKYNTFLENITDCPMEEQWSAEVKCLRAYFFL------------------------NLAFYYTD---VPMP--------LKTLSVDEANSISQTPQTEVYSQVEKDLKTAIDLLPVHYLRGIWRLPG................................................................ 215
6 -1.460PB162065 _Gut.Meta.Jp.0089312_ gi|162832207|dbj|BABA01012502.1||1 (- 0:1326~0 complete)  ali follow..  21...............................................................................................................................................EVGFITITMEDVDLATADALKRAAASMGIGAQLLAL----ESHRLSYEYYALSQRRELWTHDVGLFEYDRRGLRYHHLSVSWK------HHPPVVTAETTVLNQYLDGHELADPVPPEMDRQFLEAIKEVSARRMISTY-------YLMGEGFSGAESNLSLKQLCAMKR-QNLYARANAGLLTKDIYLRSHAPQKLILAAAGTPWYSAVSRKAIII----DGQEQLIIRMRDPLTNFEQTVVMTLDA------LPQRPPKTTKLLIETSFQSETDCHIRVTDMGFGE................... 313
7 -1.410PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  49...............................................................................................................................................................................................................................................................................................................TFENLQGTWMYVNPALQLEGDNALKNVAGSLAATEAEKKMKVEGVFNYVFNSDSTFTSALKRGSLKGTYSVSPEDKTVTLRYTVGNKKLTVSTLTAHVVLSGNELTLLFNADKLLKFLSTVSSISSNTTLKA............... 188
8 -1.220PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]  ali follow..  67...........................................................................................................................................................................................................................................................................................................................................................................EKKKPHGKQTIKQLNAQGVQLSNIKITDENIKSFDRVARKYGIDYSLKKEVGADPPKYLVFFKAKDVDVMTAAFREYAGVELKKK.. 151
9 -1.170PB015954 Q6WBB3_BIFBR/1-225 PB015954; Pfam-B_15954;  ali follow..  118........................................................................................................................................................................................................................................................................................................................................................................VIVGYRADDSYFSFARTFVNNAISLDQAMRLGELGKQIVLISSRAFAALQFQDCEIARASTYHVLRNERDVTAREAYRRKSAEADIDGLF 210
10 -1.160PB011051 Q8A0P0_BACTN/1-227 PB011051; Pfam-B_11051;  ali follow..  12  22.......................................................................................................................................................................................................................................................................................................................................................................................................SSIMGPINFEKAKKEREQAVIARIDIRKAQQEYRSLHHGMYTE-HFDTLIDFVKNQKL. 79

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.