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Query: 4bw9_A mol:protein length:291 PYRROLYSINE--TRNA LIGASE, from PDB1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSSSSGLVPRGSHMASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLGNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMVFGDTLDVMHGDLELSSAVVGPRPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRAARSESYYNGISTNLLast
1 -3.860PB014998 gi|86133284|ref|ZP_01051866.1| hypothetical protein MED152_01230 [Tenacibaculum sp. MED152]gi|85820147|gb|EAQ41294.1| hypothetical protein MED152_01230 [Polaribacter dokdonensis MED152]  ali follow..  1.....MSILKITEELQNLGNAGKDNRQRVANIVLENKELFEPLLEVTFQVDEPISVKAAWVLEWICTHHQLSWMIPHLTFFTENLKNLTFDSAIRPCAKICEHLANAYYSKRDNEFKSKLKNEHIQEI-------IETGFDWLITPQKIAVRAYTMNTLYLFGLENDWVHPELKHL------IIHESKGTKARGKHILNLIE................................................................................... 188
2 -3.210PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)  ali follow..  40............AKLTKYLQLSSQQNEQVASICDYFQEQMKVANSSKKNSDQKVRNGNLKLMKNTLTEKQYSDYLRLMALTLR.......................................................................................................................................................................................................... 113
3 -2.590HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;  ali follow..  4...........GAILCKKARQLRVYKAFGGRRHTEGRCSSIDENGKSR-HSVWLSDDVWQEVDAFYKLDNCPIRNEFAEKALRQYCGRLHAERTGAYLPRAGVLEGTLGVFGERLGRLLLKLAVEHNMTNHLLGGYSKMRGSSVREVSATHGTISFKDVMVFYKED....................................................................................................................... 167
4 -2.410HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  16  2...............................................................DMTDNNDDVLVKKFFSENRIDVPDDGFSR----VMRRLP....................................................................................................................................................................................... 37
5 -2.360HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  5..............IIVPMARTATEKLEMRGQSVTVENIGKTVTDGFEKVSNNVNSDKPRNFFQKLADVFVLVIGFILKFFIILAGIFLLPPLVLVVFILVVVTFALLMGGAGFIYNLSPFGADLINGAPLSMAIMGCIGTILFIGIPIFSLIYAICSLFKIRPLPTQ---RWILLALWLIS---------ILCGVYIHQSGM.................................................................................. 188
6 -2.110PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  19.....................MTLSAQNEENKERKQRPTPEQMMQMQTNQMVRALMLDDATAAKFTPEKYLKELRECRMMNFKPRARKDAAQGTEANTAKETPKPVMTDAEIAKMLKDQFAQSRKMLIREKYYNEFSKIL-----SQKQIMKIYQQEKSNMNKFRKEFDRRK................................................................................................................. 167
7 -1.870PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;  ali follow..  13  1....................................................................................MTLLG-YDTGTPVPGPGGMAVTYEQVATGGLPVAGLERPVVPRLSAGLK------LHGEYQGSGFTEPKYIAGQVVQLSRLGSRDIETIAHRVSGRFGREVSADNVRYLIEQKLDPLGV.................................................................................. 131
8 -1.770PB021443 Q5LG43_BACFN/1-226 PB021443; Pfam-B_21443;  ali follow..  30.......................NDMKGVSSVYISKAMMELNPNLFMKDLYIGKVAEHLNSVQ-VLSTHDNKVREEMAKDIRSLVQSSKYELLMK---SGSEVYVNRKGSKVKELIMVMNGASSLKFVYMEGDMTTDD-IKKLMLYQSTSQNFIISGDLFYANNKPVTYFKKGNSIDTNYKEELSTLNDKLKRIDQGLKNMNI.................................................................................. 226
9 -1.450HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  12  11...KLWGYITMKKMIAYCG-LDCEKCDAYIATINDNQELRKKTAKLWAELNNAPILPEHINCQGCRVDGIKTVFCDNMCGIRQCALEKGVATCDLERCPTVGEILENNPSALKNLKG........................................................................................................................................................................ 127
10 -1.370PB022506 Q11RP6_CYTH3/1-298 PB022506; Pfam-B_22506;  ali follow..  148..........................................................................QRLTSWFNKTYKQVRYVHHTASMIEGI-MLQKDKNAAEKSVFIQVEQYFLTIIVKQGKKLIFCNSFTFNTSE------VYFILFVFDQLELNPE------KCPVVVFGEITHDSESFSKLYKYIRHLTF.................................................................................. 267

FFAS is supported by the NIH grant R01-GM087218-01
1 2 9 7 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.