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Query: 4cs2_A mol:protein length:274 PYRROLYSINE--TRNA LIGASE, from PDB1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLANYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMVFGDTLDVMHGDLELSSAVVGPIPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRAARSESYYNGISTNLLast
1 -3.380PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)  ali follow..  12  47..QLSSQQNEQVASICQEQMKVANSSKKNSDQKVRNAVYGNLKLMKNTLTEKQYSDYLRLMALTLR.......................................................................................................................................................................................................... 113
2 -3.360HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  9.MARTATEKLEMRGQSVTVENIGKTVTDGFEKVSNNVNSDKPRNFFQKLADVFVLVIGFILKFFIILAGIFLLPPLVLVVFILVVVTFALLMGGAGFIYNLSPFGADLINGAPLSMAIMGCIGTILFIGIPIFSLIYAICSQLFKIRPLPTQAR-WILLALWLIS---------ILCGVYIHQSGMLY................................................................................ 190
3 -2.650PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  19MTLSAQNEENKERKQRPTPEQMMQMQTNQMVR-ALMLDDATAAKFTPIY-EKYLKELRECRMMNFKPRARKDAAQGTEANTAKETPKPVMTDAEIAKMLKDQFAQSRKMLIREKYYNEFSKIL-----SQKQIMKIYQQEKSNMNKFRKEFDRRK................................................................................................................. 167
4 -2.560HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;  ali follow..  31......................SSIDENGKSRHSVWLSDDVWQEVDAFYKLDNCPIRNEFAEKALRQYCGRLHAERTGAYLPRAGVLEGTLGVFGERLGRLLLKLAVEHNMTNHLLGGDMDMYSKMRGSSVREVSTISFKDVMVFYKED....................................................................................................................... 167
5 -2.440HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  17  2..............................................DMTDNNDDVLVKKFFSENRIDVPDDGFSR................................................................................................................................................................................................. 30
6 -2.170PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  29.............................................................................................................ILNSSAVKNAVTSVTG-----GKAVTFENLQGTWMYVNPA-----QLEGDNALKVAGSLAATEAEKKMKEYCAKVGIV-RGSLKGTYSVSPEDKTVTLRYTVGNKKLTVSTLTAHVVLSGNELTLLFNADKLLKFLSTVTTLKAINKLASEYDGMMLGF 203
7 -2.120PB014998 gi|86133284|ref|ZP_01051866.1| hypothetical protein MED152_01230 [Tenacibaculum sp. MED152]gi|85820147|gb|EAQ41294.1| hypothetical protein MED152_01230 [Polaribacter dokdonensis MED152]  ali follow..  17....GKDNRQRVANIVLENKELFEPLLEVTFQVDEPISVKAAWVLEWICTHHQLSWMIPHLTFFTENLKNLTFDSAIRPCAKICEHLANAYYSKRDNEFKSKLKNEHIQEI-------IETGFDWLITPQKIAVRAYTMNTLYLFGLENDWVHPELKHL------IIHESKGTKARGKHILNLIE................................................................................... 188
8 -2.060PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;  ali follow..  13  1...................................................................MTLLG-YDTGTPVPGPGGMAVTYEQVATGGLPVAGLERPVVPRLSAGLK------LHGEYQGSGFTEPKYIAGQVVQLSRLGSRDIETIAHRVSGRFGREVSADNVRYLIEQKLDPLGV.................................................................................. 131
9 -1.990PB021443 Q5LG43_BACFN/1-226 PB021443; Pfam-B_21443;  ali follow..  30......NDMKGVSSVYISKAMMELNPNLFMKDLYIGKVAEHLNSVQ-VLSTHDNKVREEMAKDIRSLVQSSKYELLMK---SGSEVYVNRKGSKVKELIMVMNGASSLKFVY............................................................................................................................................................ 136
10 -1.760PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;  ali follow..  11  59........................TSEQGCKAFADNTPVLFAHGITHLYDELPHHAVQSLKHRLLTYFGKTTYYRIY----------------------------RKERYITIQEQDYIRDSFVRAGFS-SDLIRYDAMVYMYELQSA........................................................................................................................ 153

FFAS is supported by the NIH grant R01-GM087218-01
1 2 9 7 5 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.