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Query: 4p71_C mol:protein length:338 Phenylalanine--tRNA ligase alpha subunit, from PDB1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MENLDALVSQALEAVRHTEDVNALEQIRVHYLGKKGELTQVMKTLGDLPAEERPKVGALINVAKEKVQDVLNARKTELEGAALAARLAAERIDVTLPGRGQLSGGLHPVTRTLERIEQCFSRIGYEVAEGPEVEDDYHNFEALNIPGHHPARAMHDTFYFNANMLLRTHTSPVQVRTMESQQPPIRIVCPGRVYRCDSDLTHSPMFHQVEGLLVDEGVSFADLKGTIEEFLRAFFEKQLEVRFRPSFFPFTEPSAEVDIQCVICSGNGCRVCKQTGWLEVMGCGMVHPNVLRMSNIDPEKFQGFAFGMGAERLAMLRYGVNDLRLFFDNDLRFLGQFRLast
1 -2.660PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali follow..  15  108VESLGKELKASAPEYEVAENAQGLDAAAVKLNEQADWYETHEKSLSKVRAVVESKAAKRLDDAKTNLTAKLDEASKLLADSD................................................................................................................................................................................................................................................................ 192
2 -2.400PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;  ali follow..  96.RDIETIAHRVSGRFGREVSADNVRYLIEQKLDPLGVTVPEGREEEDISAPRSDLLLALKGHRVIFNERRVATIAGAL.................................................................................................................................................................................................................................................................... 172
3 -2.140PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  17  72.......................................................................................................................WLRIGLAGHQPGLGESLYLAFLPLGLPASDD-------FWSQPDAPWTSARV....................................................................................................................................................................... 125
4 -1.870PB044572 Q8A533_BACTN/1-343 PB044572; Pfam-B_44572;  ali follow..  10  86............................................................................................................MECLPIKDTYIALYKGDRVVVAEFAIHPADSVDSVWVK----AHTQEEQGWIRETELKESFVPTDSISQAIHFFSDTHASY--LFRAFRRKQLQLVYFNDIDSVYPLFLCLLMAFSATVYESMQVFVPDTEHFYFNPTLSPF-KVPFILSVFLLS-------------WLFL----IVALAVLDDLFRQLTPAAAVFYLLGLMSSCIFCYFFFILMTHIYIGYLFLAFF. 305
5 -1.770PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)  ali follow..  29......................................................................................................QGLLHDMSKYSPTEFLVGCRYYKGYMSPNNAERADRGYSS----LHHKGRNKHHEYWIDDKTHTKMEGMKMPIRYVCEMFIDRVSASKNYQKEKYTDKSALEYYEKSVDHYMIHPDTKAMLEYLLVMLSVKGEEYTYSY-IKKEVLKGHIP..................................................................................... 185
6 -1.720HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  21  78..............................................................................................................................................................................................................................................................................................REDFSRGVTKHPGDNRGFYHGVGESERGLMDYFYPDTRTMFLRKEEQMLQHD 132
7 -1.690PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904;  ali follow..  69FNQIHKWEKQYNSYLKTASGYASSLKACTHLYNDGVRIFLTLGKLGKAIQNNSMNMNNLYIETATELVSVFTLLNDAVAKGSNENMLTGAE-------------RSKTLWALNDQLSDF........................................................................................................................................................................................................................... 180
8 -1.670PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali follow..  10  110...........................................................................................................................................FEDTQ-NGDY---DYNDLII---HVKNTASNHAYQHPTETWQTIEIQPIALGSTKTIKSDGSTHMISDDVRTDLFGGRQGFINTVNDNDPIRYKLASTNIKNYAMPKKEKTSAAWVAWFIEVDGKRMYAASSDIDYKSYDMVNKENMPYGLAVSNGNGT-------FSYPQEKN--------SLFETYPGFSDWING.. 289
9 -1.640HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;  ali follow..  12  31............................................................LTPSEEVVNAFQQKYPDVKNVKWEILVGAYEAEFIYSGTYSENGQHIVLDKVEAQA--YITQGGKWVRSEFDVTKDYQDSSSLVVPRAVRETIAAKGKKVDDVKLFDWSDRNDYFYVFDEPDSELLINFDGTLY................................................................................................................................................ 163
10 -1.630PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;  ali follow..  17  14........................................................................................................................................................................................................................................................................................INKGAGNP--LEFKGLKSQYLFIFAGGLVAVLLVVVILYIAGVNQWI........... 58

FFAS is supported by the NIH grant R01-GM087218-01
1 2 9 7 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.