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Query: 4tqd_A mol:protein length:291 Pyrrolysine--tRNA ligase, from PDB1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSSSSGLVPRGSHMASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLSFIQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMVYGDTLDVMHGDLELSSAVVGPIPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRAARSESYYNGISTNLLast
1 -3.230PB000716 Q60CS7_METCA/1-294 PB000716; Pfam-B_716;  ali follow..  2.................................................PKKTDIAIAGPSFEDLKQTNAHGAEYWSARELQPLLGYSQWRRFEQAIERAITSCKESGNSPEHHFAGAGKPITGG-AVQVVDDYHLSRFACYLIAQNGDPRK-IAQAQKYFAIQTRRQELSDQAAADLERLELRKQTAEEFKALSGAAQQAGVQ................................................................................. 158
2 -2.520PB014998 gi|86133284|ref|ZP_01051866.1| hypothetical protein MED152_01230 [Tenacibaculum sp. MED152]gi|85820147|gb|EAQ41294.1| hypothetical protein MED152_01230 [Polaribacter dokdonensis MED152]  ali follow..  2......SILKITEELQNLGNAGKDNRQRVANIVLENKELFEPLLEVTFQVDEPISVKAAWVLEWICTHHQLSWMIPHLTFFTENLKNLTFDSAIRPCAKICEHLANAYYSKRDNEFKSKLKNEHIQEI-------IETGFDWLITPQKIAVRAYTMNTLYLFGLENDWVHPELKHL--IETKIIHESKGTKARGKHILNLI.................................................................................... 187
3 -2.520PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  45.............................TNQMVRALMLDDATAAKFTPIYEKYLKE----------------LRECRMMNFKPRARKDAAQGTEANTAKETPKPVMTDAEIAKMLKDQFAQSRKMLIREKYYNEFSKILSQKQI-----MKIYQQEKSNMNKFRKEFDRRK................................................................................................................. 167
4 -1.850PB078508 A6TV41_9CLOT/1-155 PB078508; Pfam-B_78508;  ali follow..  1................................METIKFNSEAHELFYKEMLARTNQTDVYYKAFFYCMGICETTRKHIEDLFDFLHQPYQTGTSYKVTRAYNLWNGYVEEGTESLTTPSSLFACEYAAEFHQAIKIRFSEYYRERDFEKSSLRKQIKDLTEKNVIESTNAKEHSEIE............................................................................................................ 155
5 -1.570PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)  ali follow..  10  47...................QLSSQQNEQVASICDYFQEQMKVANSSKKNSDQKVVYGNLKLMKNTLTEKQYSDYLRLMALTLR.......................................................................................................................................................................................................... 113
6 -1.460PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;  ali follow..  11  3.........................................NLDVLFERLSRSSFRRRFRLGVQEQQYLANKGMETILEHGKDFIAQR-----QTPC-HPVFLAQHATGTCCRGCIEKWHRIEAGKSLSQEEQAYILDVILQKEVPPKKTKAATLNLPKKRKSKAEDVQGSLFPEIE............................................................................................................ 150
7 -1.320HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  12  12....LWGYITMKKMIAYCG-LDCEKCDAYIATINDNQELRKKTAKLWAELNNAPILPEHINCQGCRVDGIKTVFCDNMCGIRQCALEKGVATCDLERCPTVGEILENNPSALKNLKG........................................................................................................................................................................ 127
8 -1.320PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;  ali follow..  13  13...........................................................................................DTGTPVPGPGGMAVTYEQVATGGLPVAGLERPVVPRLSAGLK------LHGEYQGSGFTEPKYIAGQVVQLSRLGSRDIETIAHRVSGRFGREVSADNVRYLIEQKLDPLGV.................................................................................. 131
9 -1.230PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;  ali follow..  1..............................................................................................................................................MKEKESKSIIVYCFGSYMNYM-------RRQYEIMGYRLPRAVTWRALGYFAAVEAGLVAFRFL............................................................................... 57
10 -0.910PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  15  55........................................................................................GTWMYVNPQLEGDNALKNVAGSLAATEAEKK----KEYCAKVGIVEGVFNYVFNSDSTFTSALKRGSLKGTYSVSPEDKT------TLRYTVGNKKLTVSTLTAHVVLSGNELTLLF------------NADKLLKFLSTVSSISSNTTLKAINKLASEYDGMMLGFD............................. 204

FFAS is supported by the NIH grant R01-GM087218-01
1 2 7 7 6 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Awobuluyi M, Yang J, Ye Y, Chatterton JE, Godzik A, Lipton SA, Zhang D. Subunit-specific roles of glycine-binding domains in activation of NR1/NR3N-methyl-D-aspartate receptors. Mol Pharmacol. 2007 Jan;71(1):112-22. Epub 2006 Oct 17.