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Query: 5gro_A mol:protein length:115 Aspartate--tRNA(Asp/Asn) ligase, from PDB1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAVGTMRSHFCTEISEKDVGKIVKVAGWCNTYRDHGGVVFIDLRDKSGLVQLVCDPSSKAYEKALEVRSEFVLVAKGKVRLRGAGLENPKLKTGKIEIVLEELIIENKSLast
1 -4.690PB045813 Q5LF03_BACFN/1-275 PB045813; Pfam-B_45813;  ali follow..  12  21..........................DWSEFEDGEGSFLFYNPEHWTGNFRISAYKEDAAAPGGMNYGKDSVRQE.................................. 69
2 -3.390PB001232 gi|126647001|ref|ZP_01719511.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]gi|126577049|gb|EAZ81297.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]  ali follow..  13  1.......................................YIQTSFYQEKINEIISPLSRSAFAYYRFTYEGTFFDQDKIKVTPRSR-GERVFEGYIYIIEDLWAIHS.. 71
3 -3.260PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;  ali follow..  11  27............................LKGEGGSGEMVCYDIAPG---IQMSFNQLTMDSTFQSIAPVKKFLQIEGCYEVEYQNGTVSFLGEGDLCV........... 97
4 -3.190PB000790 _Gut.Meta.Jp.0111831_ gi|163310496|dbj|BABD01000203.1||3 (- 2591:4589~0 complete)  ali follow..  11  318VYNYPTASKTLYGKAMNDHLTKIITQKYIAQMPYQVLEIWNDHR-RLGLPFFEIPANESDLIGSDMVNVLKKDSWKDFYPQRTLDNADPENYQKAVE............ 423
5 -2.910HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;  ali follow..  75...........ADSLPDTFGNQIINEWFASKGLSGEEITPLDRKRGMGALEFEPSSPINGMNESSVLHIEELTELAKSVF---TDRMAFQVQLRQEGRNILDI...... 168
6 -2.810PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)  ali follow..  13  39....................QTVDLALFTMYLAMDAG-----LKGSDNDVQVLLVYDKQSGKLEHCLPSDLKNELDGVAFKASLGAAPSEGFVSRGDLYLDLLQIVLNA 127
7 -2.540HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;  ali follow..  13  10.......................ELLERIRDIRASEKRVYRKVKEIFALSVDYDSKSQVAQSFFKSVQNKLEYAATGHTAPE........................... 68
8 -2.470PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  10  29...................EPSETIWGEVVDEAT-------RVLTDQGSEGIRVRLTELSWGDNVQHNPDFYCMMDGTFQ-------NTKIFKGEYNVRID........ 98
9 -2.400PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali follow..  13  367LLTEGKALSHC-----------VGGSNYIKQHIE-GKTTIIFVRDKQDLEKSLYT----------EYKNGQIYQLRGKHNCDPTKDVQMAANKWAKLLKSKTKVLQN.. 452
10 -2.390PB021443 Q5LG43_BACFN/1-226 PB021443; Pfam-B_21443;  ali follow..  98.......................................LMKQKSTVSGSEVYVNRKGSKVKELIMVMNGAFVYMEGDMTTDDIKKLMLYQSTSQ.............. 157

FFAS is supported by the NIH grant R01-GM087218-01
1 2 9 7 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.