current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: 1efw_A mol:protein length:580 ASPARTYL-TRNA SYNTHETASE, from PDB1018

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580
# Score Template Links and tools%idFirst MRRTHYAGSLRETHVGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALGVELPLPFPRLSYEEAMERYGSDKPDLRFGLELKEVGPLFRQSGFRVFQEAESVKALALPKALSRKEVAELEEVAKRHKAQGLAWARVEEGGFSGGVAKFLEPVREALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLKREGFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKEGKDPLTGAPSPVPEEQLRELGLMVVRPLast
1 -5.460sp|Q8N565|MREG_HUMAN Melanoregulin OS=Homo sapiens GN=MREG PE=1 SV=1  ali   17  1...........................................................................................................................DDDRTLYNLIVIRNQDIHTLRQVRREVRNRWKCILEDLGFQKEADSLLSVTKTRKAREMLLKLAEETNIFPTSWELSERYLRLIALDAAEEFFKLARRTPGVPCLADGQKELHYLPFPS.................................................................................................................................................................................................................................................................................................................................................. 149
2 -5.310sp|Q96LW4|CC111_HUMAN Coiled-coil domain-containing protein 111 OS=Homo sapiens GN=CCDC111 PE=1 SV=2  ali   7.........................................................................................................................................PSIWRLFHRQAQAFNFVKSCKEDVHVFALECK-----VGDGQRIYLVTTYAEFWFYYKSRKNLLHCYEVIPENAVCKLY............................................................................................................................................................................................................................................................................................................................................................................ 80
3 -4.990sp|Q12767|K0195_HUMAN Uncharacterized protein KIAA0195 OS=Homo sapiens GN=KIAA0195 PE=1 SV=1  ali   17  8..................................................................................................................................................RAKLIHQVRPHLQNIDNVPLLVPLFTDCTPETMCEMI-----------------QEYGEVTCCLGSSANLRNSCLFLQSDISIALDPLYPSR...................................................................................................................................................................................................................................................................................................................................................... 88
4 -4.920sp|Q92844|TANK_HUMAN TRAF family member-associated NF-kappa-B activator OS=Homo sapiens GN=TANK PE=1 SV=2  ali   13  1...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TDKQEALFKPQAKDDINRGAPSITSVGLCRDEEDTSF---ESLSKFVKFPPMDNDSTFLHSTPER................ 66
5 -4.730sp|Q14207|NPAT_HUMAN Protein NPAT OS=Homo sapiens GN=NPAT PE=1 SV=3  ali   15  1...............................................................................................................................................MLLPSDVARLVLGYLQQENLISTCQTFILESS------DLKEYAEHCTDEGFIPACLLSLFGKNLTTILNEYVAMKTKETSNNVPAIMSSLWKKLD..................................................................................................................................................................................................................................................................................................................................................... 90
6 -4.630sp|Q5R3K3|FA26F_HUMAN Protein FAM26F OS=Homo sapiens GN=FAM26F PE=2 SV=1  ali   13  11............................................................................................................................QLKFWKIYLEQEQQILKSKATEHATELENIKCFFEGSHPKEYNTPS--------------------------MKEWQQISSLYTFNPKGQYYSMLHKYRKEKTHSIRSTEGDTVIPVLGFVDSSGINSTPE..................................................................................................................................................................................................................................................................................................................................... 119
7 -4.580sp|Q9BZC7|ABCA2_HUMAN ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3  ali   17  1................................................................................................................................KLDGGWLKVRQFHGLLVKR--FHCARRNSKA---FSQILLPAFFVCVAMTVALSVPEIGDLP----PLVLSPSQYHNYTQPRGNFIPYA........................................................................................................................................................................................................................................................................................................................................................................... 81
8 -4.530sp|Q9NU22|MDN1_HUMAN Midasin OS=Homo sapiens GN=MDN1 PE=1 SV=2  ali   11.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SEEYTFYPDAVSPLQASI-----LQHGMRLVASELHTGTLATALLAFPSVGPTFPTYYAHADTLCSVKSEEV....... 91
9 -4.510sp|Q5VTB9|RN220_HUMAN E3 ubiquitin-protein ligase RNF220 OS=Homo sapiens GN=RNF220 PE=1 SV=1  ali   14  1....................................................................................................................................MDLHRAAFK----------------MENSSYLPLASPALLASTAEASRDASIPCQQPRPFGVPVSVDKDVHIPFTNGSTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFA................................................................................................................................................................................................................................................................................................................................................. 100
10 -4.380sp|O60381|HBP1_HUMAN HMG box-containing protein 1 OS=Homo sapiens GN=HBP1 PE=1 SV=2  ali   13  9..................................................................................................................................................................................................QMPNAVQKLLLVMRASGMNDSLELLQC--NENLPS--SPGYNSCDEHMELDDLPELQAVQSDPTQSGMYQL........................................................................................................................................................................................................................................................................................................................... 77

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 8 4 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;