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Query: 2xti_A mol:protein length:437 ASPARAGINYL-TRNA SYNTHETASE, CYTOPLASMIC, PUTATIVE, from PDB1018

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TGVKIRDLVKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLDYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQPPERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTINKPILLNRFPSEIKAFYMQRDAKDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGRCVPLast
1 -8.080sp|Q8HWS3|RFX6_HUMAN DNA-binding protein RFX6 OS=Homo sapiens GN=RFX6 PE=1 SV=2  ali   11  1.................................................................................................................................................QFLNTGSFNFLSNTGAASCQGATLPPNSPNGYYGSNINYPESHRL----------------------GSMVNQHVSVISSIRSLPPYSDIHDPLNILDD................................................................................................................................................................................................. 77
2 -5.190tr|D6RC74|D6RC74_HUMAN Uncharacterized protein OS=Homo sapiens GN=SDAD1 PE=4 SV=1  ali   11  2.....................................................................................................................................................................SNRNNNKLPSNLPQLQNLIKRDPPAYIEEFLQQYNHYKSNVEIFKLQPNKPSKELAELVMFMAQERKRATSEEPLLCYRLVTATQST......................................................................................................................................................................................... 88
3 -5.080sp|Q8IXR9|CL056_HUMAN Uncharacterized protein C12orf56 OS=Homo sapiens GN=C12orf56 PE=2 SV=2  ali   2............................................................................................................................ASPLPSGFPARRNSRLDVFLRRHLPPEVYDAVRAYEPCIVVSNSENHILKVVLSDRLVYLTENPPKSIRRVVVAIDLIDDYPEFLSSPDREISQHI......................................................................................................................................................................................................................... 103
4 -4.480sp|Q8NHS9|SPT22_HUMAN Spermatogenesis-associated protein 22 OS=Homo sapiens GN=SPATA22 PE=1 SV=2  ali   14.....REHAQKTVLLFEVLAVLDSAVTPGPYYS-FLMRDGKNTLPCVFYE----DRELPRLIRGRVHRCVGNYDQKKNIFQCVSVRPASVSEQKTFQA................................................................................................................................................................................................................................................................................................................................................... 104
5 -4.240sp|Q8N3J3|CQ053_HUMAN Uncharacterized protein C17orf53 OS=Homo sapiens GN=C17orf53 PE=2 SV=1  ali   12  45.................MAVMIKSLTRSTMDAS-VVFKDPTGEMQGTVHRLLLE-TCQNELKPGSVLLLKQIGVFSPSLRNH-----LNVTPNNLV..................................................................................................................................................................................................................................................................................................................................................... 117
6 -4.100sp|Q8IY21|DDX60_HUMAN Probable ATP-dependent RNA helicase DDX60 OS=Homo sapiens GN=DDX60 PE=2 SV=3  ali   13  2.....................................................................................................................AISPFVCLSGNFDDDLLRLETPNHVTLGTIGVNRSQA----PVLLSQKFDNRGRKMSLNAYALDFYKHGSLIGLVQDNRMNEGDAYYLLKDFALTIKSISVSLRELCENEDDNVVLAFEQLSTTFWEKLNKV............................................................................................................................................................................................ 129
7 -4.020sp|Q71RC2|LARP4_HUMAN La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1 SV=3  ali   1..............................................................................................................................................AINTFFAKNGYRLMDSSIYSHPI--QTQAQYASPVFMQPVYNPHQQSVY-------VPQSWSPNPTPYFETPLAPFPNGSFVN.................................................................................................................................................................................................................... 77
8 -4.000sp|A4D161|CG046_HUMAN Uncharacterized protein C7orf46 OS=Homo sapiens GN=C7orf46 PE=2 SV=1  ali   1........................................................................MERLTLPLGGAAAVDEYLEYRRIVGEDDTPEEYEEYKRKVLPLRLQNRLFVSWRSPTGMDCKLVGPETLCFCTHRYKQHKTDLEAIPQQCPIDLPCQVTGCQCRAY---LYVPLNGSQPIRCRCKHFADQHSAAPGFTCNTCSKCSGFHSCFTCACGQPAYAHDTVVE..................................................................................................................................................................................................... 170
9 -3.770sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2  ali   12  2................................................................................................................................................RTALKQQGVLGLNMAPCMRAFLERLPMMLQEQYAYEKPHVVCGDQLYMQCLASHLDQLLCNPPV-NCLPDPASWNPNEWAWLECFSTTIKAAEALTNGAQFPESFTVPDLEPVPEDELVFLMDNSKWINGMDEQIMSWATS........................................................................................................................................................ 155
10 -3.700sp|A6NCI8|CB078_HUMAN Uncharacterized protein C2orf78 OS=Homo sapiens GN=C2orf78 PE=2 SV=3  ali   16.......................................................................................................................................................NFSRASAPAISSA-----GSAYLYQHSSTTMLSGVTGQSHICTSAASYPGVFEWDSTASTVKKSSSLRDFTVTVIDQNTAVSSMS......................................................................................................................................................................................................... 110

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 7 6 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.