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Query: 3g1z_A mol:protein length:326 Putative lysyl-tRNA synthetase, from PDB1018

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GMSETATWQPSASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLFPFETRFVGPGHSQGINLYLMTSPEYHMKRLLAAGCGPVFQLCRSFRNEEMGRHHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCQPAESLSYQQAFQRHLEIDPLSADKTQLREAAAKLDLSNIADTEEDRDTLLQLLFTMGVEPHIGKEKPTFIYHFPASQASLAQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQQPIDQNLLDALAAGLPDCSGVALGVDRLVMLALGAESLADVIAFTVDRALast
1 -6.060sp|Q96T83|SL9A7_HUMAN Sodium/hydrogen exchanger 7 OS=Homo sapiens GN=SLC9A7 PE=1 SV=1 (Range: 596-674)  ali follow..  14  11.....................................................................................................................................................................................................HNYLKPILTHSGPPLTTTLPAWCGLLARCLTSPQVYDNQEPLREEDSDFILTEGDLTLTYGDST................................................................. 74
2 -5.610tr|F5H535|F5H535_HUMAN Uncharacterized protein OS=Homo sapiens GN=TAF1A PE=4 SV=1 (Range: 1-150)  ali follow..  61......................................IQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEISLQHALYLLHHGMLKDAKREAETWRHGENTSSREILINLIQAYKGLLQY......................................................................................................................................................................................................... 150
3 -5.610tr|Q5JRA7|Q5JRA7_HUMAN TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa (Fragment) OS=Homo sapiens GN=TAF1A PE=2 SV=1 (Range: 1-150)  ali follow..  61......................................IQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEISLQHALYLLHHGMLKDAKREAETWRHGENTSSREILINLIQAYKGLLQY......................................................................................................................................................................................................... 150
4 -5.580sp|Q96C03|MID49_HUMAN Mitochondrial dynamic protein MID49 OS=Homo sapiens GN=SMCR7 PE=1 SV=1 (Range: 104-181)  ali follow..  17  2GPAETDPEVTPQLSSPAPLCLTLQERLLAFERDRVTIPAAQVALAKQLAGDIALE--------------LQAYFRSKPELPFGAFVPGG............................................................................................................................................................................................................................................. 77
5 -5.510sp|Q92581|SL9A6_HUMAN Sodium/hydrogen exchanger 6 OS=Homo sapiens GN=SLC9A6 PE=1 SV=2 (Range: 532-598)  ali follow..  12  12.....................................................................................................................................................................................................HNYLKPLLTHSGPPLTTTLPACCGPIARCLTSPQAYENQEQLKDDDSDLILNDGDI......................................................................... 67
6 -5.470sp|Q8WYA6|CTBL1_HUMAN Beta-catenin-like protein 1 OS=Homo sapiens GN=CTNNBL1 PE=1 SV=1 (Range: 444-536)  ali follow..  13  1.....................................................................................................................................................................................................................................................LHFKYLGAMQVADKKIEGEKHDMVRRGEIIDNDTEEEFYLRRLDAGLFVLQHICYIMQRVHQILSSIKIVRHII....... 90
7 -5.470sp|Q7Z7G8|VP13B_HUMAN Vacuolar protein sorting-associated protein 13B OS=Homo sapiens GN=VPS13B PE=1 SV=2 (Range: 1935-2063)  ali follow..  10  18................................................................................................................................................................................................................EPFLYFIVSQPSLLLSCHHRKQRVEVSIFDAVLKGVASDYKCIDPGKTLPEALDYCTVWLQTVPGEIDS-----------KSGIPPSADVNLDISKPLKANLSFTKLDQI........ 129
8 -5.320sp|Q9BPX6|MICU1_HUMAN Calcium uptake protein 1, mitochondrial OS=Homo sapiens GN=MICU1 PE=1 SV=1 (Range: 112-201)  ali follow..  1...................................................................................................................................................................................................................................................MEYENRIRAYSTPDKIFRYFATLKVISEPGEAEVFMTPEDFVRSITPNEKQPEHLGL.......................... 57
9 -5.270tr|E9PQV6|E9PQV6_HUMAN Uncharacterized protein OS=Homo sapiens GN=MICU1 PE=4 SV=1 (Range: 112-178)  ali follow..  1...................................................................................................................................................................................................................................................MEYENRIRAYSTPDKIFRYFATLKVISEPGEAEVFMTPEDFVRSITPNEKQPEHLGL.......................... 57
10 -5.160sp|Q8N187|AL2S8_HUMAN Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8 protein OS=Homo sapiens GN=ALS2CR8 PE=2 SV=2 (Range: 419-517)  ali follow..  21  1.............................................................................PQVKIQELVSQGIEQVYAVRKQLRRELFKPDEVPERHNLSFFPTVNDIKNHIHEVQKSLR............................................................................................................................................................................................. 66

FFAS is supported by the NIH grant R01-GM087218-01
1 2 9 7 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.