current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: 1qf6_A mol:protein length:642 THREONYL-TRNA SYNTHETASE, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590    .  600    .  610    .  620    .  630    .  640
# Score Template Links and tools%idFirst MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSRSLKQLEELast
1 -177.0001qf6_A mol:protein length:642 THREONYL-TRNA SYNTHETASE  ali model  100  1MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSRSLKQLEE 642
2 -166.0001nyq_A mol:protein length:645 threonyl-tRNA synthetase 1  ali model follow..  43  3QINIQFPDGNKKAFDKGTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSN--DEYKLELIDAI-PEDENVTLYSQGDFTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEERKERDHRKIGKELELFTNSQLGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFRLSEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPKQVQIIPVNVDHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIRLKKHR.... 645
3 -115.0003ugq_A mol:protein length:460 Threonyl-tRNA synthetase, mitochondrial  ali model follow..  35  2...............................................................................................................................................................................................................GSSSSGLVPRGSHMASATKNAS-------SATPATMTSMVSQRQDLFMTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAFYGPKLDIMVTDHLRKTHQVATIQLDFQLPERFDLKFKDQDNSYKRPIMIHRATFGSIERFMALLIDSNEGRWPFWLNPYQAVIIPVNTKNVQQLDMCTAPLNDWHFNVDLDIRNEPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRERDNRSFEKLTMSQIWEKFIELEKNYK...... 454
4 -113.0004hwo_A mol:protein length:411 Threonine--tRNA ligase  ali model follow..  99  2................................................................................................................................................................................................................................................ARDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSRSLKQLEE 403
5 -112.0004p3n_A mol:protein length:415 Threonine--tRNA ligase, cytoplasmic  ali model follow..  43  1...........................................................................................................................................................................................................................................MGSSSSGDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDEIKGCLDFLRTVYSVFGFS-FKLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDGAFYGPKIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTYVSHDGDDKRPVIVHRAILGSVERMIAILTENYGGKWPFWLSPRQVMVVPVGPTCDEYAQKVRQQFHDAKFMADIDDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETIERLQQLKEFRSKQAEEE 408
6 -110.0004hwt_A mol:protein length:413 Threonine--tRNA ligase, cytoplasmic  ali model follow..  44  2................................................................................................................................................................................................................................................ARDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDEIKGCLDFLRTVYSVFGFS-FKLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDGAFYGPKIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTYVSHDGDDKRPVIVHRAILGSVERMIAILTENYGGKWPFWLSPRQVMVVPVGPTCDEYAQKVRQQFHDAKFMADIDDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETIERLQQLKEFRSKQAEEE 404
7 -110.0003a31_A mol:protein length:471 Probable threonyl-tRNA synthetase 1  ali model follow..  28  1............................................................................................................................................................................................................................MASGQDKTHIDYAYELDITVKPDSRVPVFNREFATF--TGAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDIEGHEFAVKPMNCPYHILLFLNEVASKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFKLTFKVRLSMIGKEFMGSKEEWEGAEEALREAASRINEKYGIDEGEAAFYGPKLDFIEESGVSKEWQMGTIQFDFNLPRRFRLYDVVREFGIEEVYIIHRALLGSIERFLGVYLEHRRGRMPFTLAPIQFAVIAVKTEIEDLASSIAKGLLDKGFRVAVKGSSKGLSSDVRHIESTAKPAVVFIGAKEVREKVLDVRVFDLESMKRRRLAIAYGDAADAVENLAAVAEE. 448
8 -72.7002i4l_A mol:protein length:458 Proline-tRNA ligase  ali model follow..  21  2.....................................................................................................................................................................................................GSSSSGLVPRGSHMR--LSRFF---------LPILKENPKEAEIVSHRLMLR---AGMLRQEAAGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIDRHKRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRPR-FGVMRGREFLMKDAYSFDVDEAGARKYNKMFVAYLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYDGDLESEVPEANRLNTRGIEVGQIFYFGTKYKANVTGPDG-TDAPIHGGSYGVGVSRLLGAIIEACHDDNWPEAVAPFRVTILNLDAATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFATADLIGIPWQIHVGPRGLAEGKVELKRRSDGARENLALADVVARLT............. 452
9 -65.0001nj1_A mol:protein length:501 Proline-tRNA Synthetase  ali model follow..  17  2.....................................................................................................................................................................................................GSSSSGLVPRGSHMQKPIKKDPNRYHGEKM---------TEFSEWFHNILEE-AEIIDQRYPVKGMHVWMPHGFMIRKNTLKILRRIL-DRDHEEVLFPLLVEDELAKEAIHVKGFEDEVYWVSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGSEYTVAFDT--------------------------------LMPDGKTLQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQTC---YGLSDRVIASVIDESGLCLPPDVAAHQVVIVPIAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETLRELMKDILENLRTR 416
10 -62.9004k86_A mol:protein length:535 Proline--tRNA ligase  ali model follow..  17  2...............................................................................................................................................................................................................GSSSSGLVPRGSHMASGAGEGQGPKKQTREENLADWYSQVITKSEMIEYHD-ISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHP-QPFLRTREFLWQEGHSAFTMEEAAEEVLQILDLYAQVYEELLAIPVVK------------------------------GRKTEKEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNS-WGLTTRTIGVMTMVHGDNLPPRVACVQVVIIPCKEALIAKCNDYRRRLLSVNIRVRADLRNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEAETKLQAILEDIQVTLFTR 432
11 -62.5005xil_A mol:protein length:512 Putative prolyl-tRNA synthetase  ali model follow..  16  1.........................................................................................................................................................................................................................................GAMGIAAKREENFSAWYIDVITKAEMVSGCYIIRPWAYYVWKCVQRFLGGKIEKLGVEDCYFPMFVSRSLEREKDHIEGFAPEVAWVTRAEQPVAVRPTSETVMYPYYAKWIRSHRDLPVRLNMWNNVIRWEFSHP-TPFIRTREFLWQEGHCAWKAEECAKEVLEILECYASVYEQLLAVPVVRGRKTEKEK------------------------------FAGGDYTTTVETFIEAVGRGCQGATSHNLGQNFGKMFDIRFQDPENN-EQTLIPWQNSWGLSTRVIGVMIMVHGDNMPPRVASTQVIIIPVGQELLASCWRLESELCEGGVRARCDLRDNSPGWRFNHWEVKGVPLRVELGPRELAERSLAVAVRHSGARHSVAWDAQTPAAVAALLEDVHAQMYA 404
12 -60.2001h4q_A mol:protein length:477 PROLYL-TRNA SYNTHETASE  ali model follow..  19  1......................................................................................................................................................................................................................MAKEKGLTPQSQDFSEWYLEVIQKAELADYGPV-------------RGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSLRKEAEHVEGFSPELAVVEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMR--TRPFLRTSEFLWQEGHTAHTREEAEEEVRRMLSIYARLAREYAA------------------------------IPVIEGLKTEKEKFAGAVYTTTIEALMKDGKALQ-AGTSHYLGENFARAFDIKFQDRDLQVK---YVHTTSWGLSWRFIGAIIDDRGLVLPPRLAPIQVVIVPIYERVLEAAQGLRQALLAQGLRVHLDDRQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRLGGK-ETLPLAALPEALPGKLDAFHEELYRR 395
13 -59.4005f9y_A mol:protein length:511 Aminoacyl-tRNA synthetase  ali model follow..  18  2..................................................................................................................................................................................................................ASKENESLLGITADK-----------ITSFADWYSQVIVKSEMIEYYD-ISGCYILRPWSYFIWETIQSVFDQKIKQHDVQNAYFPIFVTQKLETEKDHVEGFSPEVAWVTKSAEPIAIRPTSETIMYPYFAKWIRSHRDLPLKINQWTSIVRWEFKHPT-PFIRTREFLWQEGHTAHSTRKEALEMVDII-----------------------------LNEYASIYEDLLATPVVKGTKSENEKFPGGDITKSIEGFIPEIGRAVQAATSHLLGQNFSKMFGVEFEDEKG---NKEYAHQTSWGLTTRAIGVMIMTHGDNLPPKVAPVQVIIIPITEEQKKICNEVECILKKAGVRVKIDDRNYTPGWKYNHWEVKGVCLRFEVGPRDIEKRSVRVVVRDNMEKMDIPISELESKIPKLLEEFQNRLLFK 405
14 -58.2003ial_A mol:protein length:518 Prolyl-tRNA synthetase  ali model follow..  15  1..............................................................................................................................................................................................................................MAMGGDVTFSLTKTRDTFADWFDAIMDAAELVDRRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFKKESDHIKGFEAECFWVQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNT-KPLIRVREIHWNEAHCCHATAEAVSQLSDYWKVIDTIFSDELCFKGQKLRRVCWDRF-------------------------------PGADYSEVSDVVMPCGRVLQTAGIHNLGQRFSSTFDILYANKANESVHPYLTCAGISTRVLACALSIHGDSGGVLPPLIAPIHVVIIPIGCGKKNNQESADTLKSKLGLRVSIDDDSKSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDKDQKRVIPITEVMKVSSHTTENHELVVKNV 410
15 -57.7004hvc_A mol:protein length:519 Bifunctional glutamate/proline--tRNA ligase  ali model follow..  18  3..............................................................................................................................................................................................................SGEGQGPKKQTRLGLEAKKEENL-----------ADWYSQVITKSEMIEYHD-ISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKHVADFAPEVAWVTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHP-QPFLRTREFLWQEGHSAFTMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEK------------------------------FAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFEDPKI-PGEKQFAYQNSWGLTTRTIGVMTMVHGDNLPPRVACVQVVIIPCGEALIAKCNDYRRRLLSVNIRVRADLRDNSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEAETKLQAILEDIQVTLFTR 416
16 -55.5004ncx_A mol:protein length:506 Proline--tRNA ligase  ali model follow..  17  1.....................................................................................................................................................................................................................MASNILGITSKK-----------IENFSDWYTQVIVKSELIEYYD-ISGCYILRPAAYYIWECVQAFFNKEIKKLNVENSYFPLFVTKNLEKEKNHIEGFSPEVAWVSNLPEEIAIRPTSETIMYSVFPKWIRSYRDLPLKLNQWNTVVRWEFKQP-TPFIRTREFLWQEGHTAHKNEE---EAVKLVFDILDLYRRWY--------------------------EEYLAVPIIKGIKSEGEKFGGANFTSTAEAFISENGRAIQAATSHYLGTNFAKMFKIEFEDENEVKQ---YVHQTSWGCTTRSIGIMIMTHGDDLPPNVSKYKVVIVPIFYKTTSYCKDIEKILKNAQINCVYDDRASSPGYKFNHWELRGIPIRIEVGPKDLQNNSCVIVRRDNNEKCNVKKESVLLETQQMLVDIHKNLFLK 401
17 -54.7001nj8_A mol:protein length:459 Proline-tRNA Synthetase  ali model follow..  15  1.........................................................................................................................................................................................................................................GSHMLEFSEWYSDILEKAEIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAHIKGFEDEVYWVTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHTKEEAENQVKEAISIYKKFFDTLGIPYLISKRPEWDK--------------------------------FPGAEYTMAFDTIFPDGRTMQIATVHNLGQNFSKTFEIIFETPTGDKDYAYQCYGISDRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGKEEKAKEIYEKLKGKFRVHIDDRDIRPGRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEKTLNNIMENIKNR 389
18 -54.6004v1a_c mol:protein length:334 MITORIBOSOMAL PROTEIN ML39, MRPL39  ali model follow..  17  66.HVGKTDPGTVFVMNKNSTPYSCAMHLSEWYCRKSILALVDGQPWDMYKPLTKSCEIKFLTFKDDDPNKAYWRSCAMMMGCVIERAFKDVRAPEVPVIAGAFCYDVVLDKMPTKENLHSFTKDARALIYKDLPFETLEVEAKVALEIFQHNKYKLDFIEEKASQNPERIVKLHRFGDFIDVSEGPLIPRTSICFQYEVS----AVHNLQTQSSLVRRFQGLSLP--VHLRAHFTIWNKLLERSRKMVTEDKTKPTEESAS.............................................................................................................................................................................................................................................................................................................................................................................................. 333
19 -51.6005xif_A mol:protein length:500 Prolyl-tRNA synthetase (ProRS)  ali model follow..  17  2....................................................................................................................................................................................................................................AMVTAKKDENFSEWYTQAIVRS---MIEYYDISGCYIMRPWAFHIWEKVQRFFDDEIKKMGVENSYFPMFVSRHLEKEKDHVEGFSPEVAWVTHYPEKIAIRPTSETIMYPAYAKWIRSHRDLPLKLNQWCSVVRWEFKQP-TPFLRTREFLWQEGHTAHATEEEAWELVLDI-----------------------------LELYRRWYEECLAVPVIKGEKSEGEKFAGGKKTTTVEAFIPENGRGIQAATSHLLGTNFAKMFEIEFEDEEGHKR---LVHQTSWGCTTRSLGVMIMTHGDDIPPRVASVQVVIIPITGEILGKCRELKTMLEKADIRVRIDDRNYTPGWKYNHWEVKGVPLRLELGPKDLAKGTARVVRRDTGEAYQISWADLAPKLLELMEGIQRSLFEK 397
20 -51.4003j7y_7 mol:protein length:338 mL39  ali model follow..  17  69HVGKTDPGTVFVMNKNISTPYSCAMHLSEWYCRKSILALVDGQPWDMYKPLTKSCEIKFLTFKDCDPNKAYWRSCAMMMGCVIERAFKDVRAPEVPVISGAFCYDVVLDSMPTKENLRSFTKDAHALIYKDLPFETLEVEAKVALEIFQH--SKYKVDFIEEKASQNPE-RIVKLHRIGDFIDVSEGPLIPRTSICFQYEVSAVHNLQPTQPSLIRRFQGVSLPVH--LRAHFTIWDKLLERSRKMVTEDQSKATEECTST............................................................................................................................................................................................................................................................................................................................................................................................. 338
21 -51.2001b76_A mol:protein length:442 Glycine--tRNA ligase  ali model follow..  14  1................................................................................................................................................................................................................................AASSLDELVALC--------KRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNERDDMEGLDASVLTHRLVLHYSGHEATFADPMVPRGGRGLLAYLRPETAQGIFVNFKNVLDATSKLGFGIAQIGKAFRNEITPR-NFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWWQEMGLSRENLVPYPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQEALGITARVLRNEHSTQRLAYRDPEGKWFVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVPEITEYAKRLKARLLALGLGRVLYEDTGNIGKAYRRHDEVGTPFAVTVDYDTIGQSTVTVRDRDTMEQIRLHVDELEGFLRERLR......... 441
22 -47.4003qne_A mol:protein length:485 Seryl-tRNA synthetase, cytoplasmic  ali model follow..  15  2.......................................................................................................LDINAFLVEKGGDPEIIKASQKEIIAEYKEWVKLRFDLDEHNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVDSQDEENNELVRTWTP--ENYKKPEQIAAATGAPAKLSHHEVLLRLDGYDPERVGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGEDEYLIATSEQPISAYHAGE-ESPAEQLPVRYAGYSSCFRREAGSHAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGAAAKKYDLEAW--------------------FPFQQEY-------------KELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYVHCLNSTLSATERTICCILENYQKEDGLVIPEVLRKYIPGEPEFIPYIKELPKNTTSVKKAKGKNPKNTTSVKKAKGKNGSR..................................................... 479
23 -46.3005xip_A mol:protein length:498 Prolyl-tRNA synthetase, putative  ali model follow..  18  10............................................................................................................................................................................................................................................STNFADWYTQVIVRGELVEYYD-ISGCYIIRPWAYRIWEAVQKFFDDGIKRLGVENCYFPMFVSQALEKEKDHVEGFKPEVAWVTHYPEKVAIRPTSETIMYPAYAKWIRSHRDLPLKLNQWNNVVRWEFKQP-TPFLRTREFLWQEGHTAATEEEAYTLVLEILELYRQWYEDYLAVPVIKGEKSENEKFAGG-------------------------------KKTTTIEGIIPDTGRGIQAATSHLGQNFSRMFSIEFEDEKGAKQ---LVHQTSWGCTTRSLGVMIMTHGDDLPPRVVAVQAVIIPIIFKETGKCRELERLLNAAGVRVKVDDRNYTPGWKFNDWELKGVPLRLEIGPRDVESCQTRVVRRDTSEARNVPWAEAASTIPAMLETMQKDLFNK 398
24 -41.1001ati_A mol:protein length:505 GLYCYL-TRNA SYNTHETASE  ali model follow..  13  9............................................................................................................................................................VALCKRRGFIFQSSEIYGGQGVYDY--GPL--------GVELKNNLKQAWWRRERDDMEGLDASVVLHYSGHEATFADPMVDNRITKKRHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRPRGGRGLLAYLRPETAQGIFVNFKNVLDATSKLGFGIAQIGKAFRNEIT-PRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWWQEMGLSRENLVPYPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQEALGITARVLRNEHSTQRLAYRPETGKWFVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVPEITEYAKRLKARLLALGLGRVLYEDTGNIGKAYRRHDEVGTPFAVTVDYDTIGQSTVTVRDRDTMEQIRLHVDELEGFLRERLR......... 504
25 -40.1002cim_A mol:protein length:522 SERYL-TRNA SYNTHETASE  ali model follow..  12  11..............................................................RGSHMKLQFNLKAYFKTSADPTPAKDAIAALFEEANSTLLTRGAPEGQGAKVTEWKLGEDRIELTLQSGRYVRVHDAIFRLRKQLAEALGKKYKIGIRG--IEVESFIIKVPADHELRMLKVPYIKSMENIEGGIQLEVGEAEMKNRVPDRILEKIEAAQYGAKAEHWNLLWQREPMEHPFKEDPTQAM--WLKRGSSRGQWIHGPQSARIFRTFEKIVLEELLEPGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRGTSHRYE-SGGIHGIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDILDIEW-RKARVTPWFMAQEGLLGLAEENTVGTTDYEACLPYRGPDGEWLEFQN----------------VSINGDK-YPKGFNVKLQSGD-------ELWSGCSGGLERWAAVFLAQKGLDPANWPEEFRNRVGEMPK............................................................................................. 511
26 -34.3001wwt_A mol:protein length:88 Threonyl-tRNA synthetase, cytoplasmic  ali model follow..  28  12.IKVTLPDGKQVDAESWTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELLKFEDEEAQAVYSGPSS...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 87
27 -32.4002j3l_A mol:protein length:572 PROLYL-TRNA SYNTHETASE  ali model follow..  18  4................................................................................................................................................................................................................................SKMLIPTLREVPNDAEVLSHQILLRA----YIRQVAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLDRNDRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRSR-SGLLRGREFIMKDGYSFADEASLDQSYRDYEKAYSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSIGPVLAFTKGIEIGHIFKLGT-----RYSDAMGATVLDENGREKSVIM---GCYGGVSRLLSAIVEQNADEWPTGIAPFDLHVVQMNEYQTKLSQEVEAMMTEAGYEVLVDDRNERAGVKFADADLIGCPIRITVGKKAVD-GVVEVKIKRTGEMLEVRKEELESTLSILMNTTSEVE... 572
28 -30.5005ucm_A mol:protein length:579 Proline--tRNA ligase  ali model follow..  19  1.....................................................................................................................................................................................................................MAMRTSQYLLSTLKETPA------DAVVISHQLLLRA----MIRRLASGLYTWLPMGLRVLRKVETIVREEMNAAGALEVLMPAVQPAELWQESGRWEQYGPELLRLDRHEREFCVGPTHEEVITDLARNELNSYKQLPINFYQIQTKFRDEIRPR-FGLMRGREFIMKDAYSFLSQDSLQQTYDGMYQAYSKIFSRLGLDFRPVQADNGSIGGSGSHEFHVLANSGEDDIVFSDSSDYAANIEKAEAVKGTLVIKRGIEVGHIFQLGT-----KYSEAMKLSVLSEQGKPVNLIM---GCYGGVSRVVAAAIEQNHDEWPSALAPFQIALVPLTESVKQATDKLYAELTAAGFEVLLDDRDKKTGVKFADMELIGIPHRIVISDRGLSEGVLEYKGRRDSESQNLPIGELMSFITEKLSR........ 573
29 -28.5001v95_A mol:protein length:130 Nuclear receptor coactivator 5  ali model follow..  12  7.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGQEHRNMPQADAMVLVARNYERYKNECREK 115
30 -20.5003net_A mol:protein length:465 Histidyl-tRNA synthetase  ali model follow..  13  13.................................................................................................................................................................................................................................................................STPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKLPPNRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDL-TFPFARYQMDVVFRGERAKD-----RFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAVNIGDFVIRINNRK-QSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDGSVDDVLDKLKHLSQT-ITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTGGRYEELVTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRRLT......... 465
31 -20.4004g85_A mol:protein length:517 Histidine-tRNA ligase, cytoplasmic  ali model follow..  12  1...............................................................................................................................................................................................................GPGSEFELRRQMAERAALEELVKLQGERVRKQQKASAELIEEEVAKLL--KTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETL--MGKYGEDSKLIYDLKDQGELLSLRYDLTVPFARYLAMN----KLTNIKRYHIAKVYRRDNPAMTRG--RYREFYQCDFDIAGNFDPMIPDA-ECLKIMCEILSSLQIGDFLVKVNDRDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVA-FGIDDKISFDLSLAR--------LDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGVERIFSIVEQR---------TETQVLVASAQKKLLEERLKLVSELWDAGIKAELLKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQ........ 515
32 -20.2003hrk_A mol:protein length:456 Histidyl-tRNA synthetase  ali model follow..  14  24.................................................................................................................................................................................................................................................................EPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKGGHRVALRPEMTPSLARLLLGKGRSL-LLPAKWYSIPQCWRYEAITR-----RRREHYQWNMDIVGVKSVSAE--VELVCAACWAMRSLGLSSKDVGIKVNSRKVLQTDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEIAQRVGEEHEADWVLFDASVVRGLAY-YTGIVFEGFDREGKFRALCGGDCVIVELLQEK--RLLPDIPHVVDDVVIPFDESMRPHALAVLRRLRDAGRSADIILDKKKVVQAFNYADRVGAVRAVLVAPEEWERGEVQVKMLREGTGKEEGGAERGFAVPLD........... 447
33 -20.2001qe0_A mol:protein length:420 Histidine--tRNA ligase  ali model follow..  16  3.................................................................................................................................................................................................................................................................KIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARG---DVVQKEMYTFDKGDRSITLRPEGTAAVVRSYEHKMQGNPNQPIKLYYNGPMFRYERKQK-----RYRQFNQFGVEAIGAENPSVD--AEVLAMVMHIYQSFGLKHLKLVINSVDCKVDRDKEAIKTAPEQVKAYLDDLGIPYTEDPN---YYTHTAFELMMDNPNYDGAITTL--------RYN-GLLELLDGPSETGI---GFALSIERLLLALEEE--GIELDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK............ 420
34 -20.1002pme_A mol:protein length:693 Glycyl-tRNA synthetase  ali model follow..  16  14........................................................................................................................................................................RLAVRQQGDLVRKLKEDKAPQVDVDKAVAELK----------ARKRVLEAKELALQPKDDIVDRAKMEDTLKRR----YDQAFAIY-----VSGLYDFGPVGCALKNNIIQTWRQHFQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKNGECFYLRPETAQGIFLNFKRLLENQGKLPFAAAQIGNSFRNEIS---SGLIRVREFTMAEIEHFVDPS---EKDHPKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVG-AHYACDCWDAESKTSYGWIEIVGTFQLTKDM-INVKRFQKTLYVEEVVPNVIEPSF--GLGRIMYTVFEHT--SFPAVVAPFKCSVLPLNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTTATLRDRDSMRQIRAEISELPSIVQDLANGNI...... 660
35 -20.0003hri_A mol:protein length:456 Histidyl-tRNA synthetase  ali model follow..  13  24.................................................................................................................................................................................................................................................................EPVQGCRDFPPETMRLRKYLFDVFHSTARKFGFEEYDSPVLESEELYIRKAGEEITEQMFNFITKGGHRVALRPEMTPSLARQLLAKGRSLL-LPAKWYSIPQCWRYEAITR-----RRREHYQWNMDIIGVKSVSSE--VELVCAACTAMQSLGLSSKDVGVKINSRKILQTCVIVDKMEKLPREEVVAQLAAIGLESNVVDAITSTLSLDFITQIEAYGFGDWVIFDASVVRGLAY-YTGIVFEGFDRDGNFRALCGGDCVIVELLNEK--KLLPELHHVVDDLVIPFDETMRPHALSILRRLRDAGRSADIVFDKKKVVQAFNYADRIGALRAVLVAPDEWARGEVRVKMLREGAGREEGANERGIVLPVD........... 447
36 -19.9003mey_A mol:protein length:346 Bll0957 protein  ali model follow..  12  1.........................................................................................................................................................................................................................MGSSSSGLVPRGSHMNIAVLPNSPDTAPQIADPLDHLAHSMGSDGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCLSPADLVLSPAACYPVYPIAASRGPL-PKGGLRFDVAADCFRREPS---KHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLGLT---FRVDYASDPFFGRVGQMKAVSQKQQQL--------------------KFELLIPRSEEQPTACMSFNY--HFGTTWGIQDANGE-------PAHTGCVAGMDRLAVAMFHTHGTDLSAW--PAKVR------DILGLQPHVAAGAHGEGWR.......................................................................... 340
37 -19.8004g84_A mol:protein length:464 Histidine--tRNA ligase, cytoplasmic  ali model follow..  12  15.................................................................................................................................................................................................................................................................KTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETL--MGKYGEDSKLIYDLKDQGELLSLRYDLTVPFARYLAMN----KLTNIKRYHIAKVYRRDNPAMTRG--RYREFYQCDFDIAGNFDPMIPDA-ECLKIMCEILSSLQIGDFLVKVNDRDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVA-FGIDDKISFDLSLAR--------LDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGVERIFSIVEQR---------TETQVLVASAQKKLLEERLKLVSELWDAGIKAELLKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQ........ 462
38 -19.6004h2w_A mol:protein length:346 Amino acid--[acyl-carrier-protein] ligase 1  ali model follow..  13  12................................................................................................................................................................................................................................GSHMNIAVLPNSPDTAPQIADPLDHLADKLFHSMGSDGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCLSPADLVLSPAACYPVYPIAASRGPL-PKGGLRFDVAADCFRREPS---KHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLGLT---FRVDYASDPFFGRAGKMLANNQRDQQL--------------------KFELLIPRSEEQPTACMSFNY--HFGTTWGIQDANGE-------PAHTGCVAGMDRLAVAMFHTHGTDLSAW--PAKVR------DILGLQPHVAAGAHGEGWR.......................................................................... 340
39 -19.6001wu7_A mol:protein length:434 Histidyl-tRNA synthetase  ali model follow..  16  7.................................................................................................................................................................................................................................................................EKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLIPEATPSTVRMVTS--RKDLQRPLRWYSFPKVWRYEEPQA-----RYREHYQFNADIFGSDSPEAD--AEVIALASSILDRLGLQDYEIRINSRKVDQLRSAGIGEDGVSMIADLCSGTRGIDEMARITGKSSEEIARMAAVEDLLASYGVKNVRYDFSIVRGLSY-YTGIVFEAYDRSGQFRAILGG--RYDNLASLMSGESVP---EKKSVYICRVGKINSSIMNEYSRKLRERGMNVTVEIMERGLSAQLKYASAIGADFAVIFGERDLERGVVTIRNMYTGSQENVGLDSVVEHLISQATLE....... 428
40 -19.4001v7o_A mol:protein length:165 alanyl-tRNA synthetase  ali model follow..  17  9........................................................................HSALHVVKGAVVKVLGSEAKWTYSTYGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEAEKMFGE-----DMYDLFPVPEDVRILKVVVIEDWVNACNKEHTKTTGEIGPIKIRKVRFRKSKG.................................................................................................................................................................................................................................................................................................................................................................................................................................................. 142
41 -19.2004rdx_A mol:protein length:423 Histidine--tRNA ligase  ali model follow..  18  10.....................................................................................................................................................................................................................................................................GTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGAATDIVRKEMFTFDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQK-----RYRQFHQVNYEALGSENPILD--AEAVVLLYECLKELGLRRLKVKLSSVGDKELGVRPMLDFLGKEVERHLERLSVPYELEPGLDYYVRTAFEVHHEEIGAQSALGGGGRYD---------GLSELLGGPRVPGV---GFAFGVERVALALEAE--GFGLPEEKGPDLYLIPLTEEAVAEAFYLAEALRP-RLRAEYALAPRKPAKGLEEALKRGAAFAGFLGEDELRAGEVTLKRLATGEQVRLSREEVPGYLLQALG......... 423
42 -18.6004e51_A mol:protein length:467 Histidine--tRNA ligase  ali model follow..  16  7.............................................................................................................................................................................................................................................EAQTQGPGSMTEQKRKLEKLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGEVTDIVEKEMYSFALNGENLTLRPENTAAVVRAAIEH-NMLYDGPKRLWYIGPMFRHERPQR-----RYRQFHQVGVEALGFAGPDAD--AEIVMMCQRLWEDLGLTGIKLEINSLDTKNPALQEIVRNAPEGLQRLLKANNVPFTINPGLDYYNLTVFEWVTDKLGAQGTVAAGGRYD---------PLIEQLGGKPTAAC---GWAMGIERILELLKEE---------EGVDVYVVHQGDAAREQAFIVAERLRDTGLDVILDGAGASFKSQMKRADASGAAFAVIFGEDEVTNGTASVKPGEKSVQQSVPVESLTEFLINAMVATAEDGDD. 461
43 -18.6002dq0_A mol:protein length:455 Seryl-tRNA synthetase  ali model follow..  14  31..................................................................................................................DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDEEIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVG------------KDENDNVPIRFWGKARVWKGHLERFLEQSQEWKPKLHVDLLEILGGADFARSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIY--KVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIPYRVVNICTGDLGYVADIEAWMPGQGKFREVVSASNCT----------------------------------DWQ-ARRLNIRFRDRTDEKPRYVHTLNSTAIATSRAIVAILENHQEEIPKVLWK....................................................................................................... 436
44 -18.6002lw7_A mol:protein length:170 Histidine--tRNA ligase, cytoplasmic  ali model follow..  15  49....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SKQKFVLKTPK--ALEEKIRTTETQVLVASAQKKLLEERLKLVSELQDAGIKAELLYKKNKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQPL...... 167
45 -18.6003rhu_A mol:protein length:160 SC_1wnu  ali model follow..  16  9........................................................................HSALHVVKGAVVKTAGSKWTTSTYVKGNKGVLIVKAALEPDKWGIAAIEALANEKVKENAPIKIYELPREEAEKMFGED--------LFPVPEDVRILKVVVIEDWVNACNKEHTKTTGEIGPIKIRKVRFRKSKG------LLEIHFELLELE................................................................................................................................................................................................................................................................................................................................................................................................................................ 154
46 -18.4003rfn_A mol:protein length:159 BB_1wnu_001  ali model follow..  17  2..................................................................SIEVRTHSALHVVKGAVVKAAGSKWTTSTYVKGNKGVLIVKAALELDKWAWAAMEALANEKVKENAPIKIYELPREEAEKMFGED--------LFPVPEDVRILKVVVIEDWVNACNKEHTKTTGEIGPIKIRKVRFRKSKG------LLEIHFELLELE................................................................................................................................................................................................................................................................................................................................................................................................................................ 153
47 -18.4005c51_B mol:protein length:485 DNA polymerase subunit gamma-2, mitochondrial  ali model follow..  11  1..........................................................................................................................................................................................MRSRVAVRA-KVCRCLLSGFGGRVDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAPGSGEGSEALLDSLLSGCHPGFGPLGVELRKNLAAEWWTSVFREQVFPVDALHHKPGPLLPGDSAFRLVSAETLREILQDKELKLRENLLHGALEHYVNCLDLVNRLPYGLAQIGVCFHPVFDTK-NGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSS----------------DCQDEEGRKGNKLYYNFPWG-------------KELIETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNG--DLDRMLAYLYDSFQ-KLHPCLAPIKVALDVGTLELRQVCQGLFNELLENGISVYLETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISSAK...... 483
48 -18.2001wle_A mol:protein length:501 Seryl-tRNA synthetase  ali model follow..  17  68........................................................................................................STWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPDV---------------GDESQARVLHVVGD------------KPAFSFQPRGHLEIAEKLDIIRQKRSGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETD-EPWGLYRVHHFTKVEMFGVTGPEQSSELLEEFLSLQMEILTELGLHFRVLDMPTQELGLPADIEAWMPGRGRFGEVTSASNCT----------------------------------DFQ-SRRLHIMFQTEAGELQFAHTVNATGC-AVPRLLIALLESYQQKVPPALQP....................................................................................................... 460
49 -18.1002el9_A mol:protein length:431 Histidyl-tRNA synthetase  ali model follow..  16  3.......................................................................................................................................................................................................................................................GYQDPMAKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRA---DVVEKEMYTFDRNGDSLTLRPEGTAGCVRAGIEH-GLLYNQEQRLWYIGPMFRHERPQK-----RYRQFHQLGCEVFGLQGPDID--AELIMLTARWWRALGISEHKRRMYTNPLRVLDSKNPEVQA-AGLCKLLESAGIAYTVNQGLDYYNRTVFEWVTNSLGSQGTVCAGGRYD---------GLVEQLGGRATPAV---GFAMGLERLVLLVQAV--NPEFKADPVVDIYLVASGADTQSAAMALAERLRDPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTLLG......... 431
50 -18.1005c53_B mol:protein length:903 Pol gamma B  ali model follow..  11  317......................LYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPGYLETMQSSLEQSILFTVLVTETTLENGLIHLRSR-DTTMKEMMHISKL---KDFLIKYISSAKNVMRSRVAVRACHKVCRCLLSGFGGRVDLLTERSSPKGGHVKSHAELEGNGEHPEAPGSGEGSEALL------------------EICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPV---------------DALHHKPGPLLPGDSAFRLRENLLHGALEHYVNCLDLVNRLPYGLAQIGVCFHPVFDTKQNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSS----------------DCQDEEGRKGNKLYYNFPWG-------------KELIETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNG--DLDRMLAYLYDSFQ-KLHPCLAPIKVALDVGTLELRQVCQGLFNELLENGISVYLETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISSAK...... 901
51 -18.0006blj_A mol:protein length:485 Serine-tRNA ligase  ali model follow..  15  156...............................................................................................................................................................................................................DNEDNNGIVRMVGNPRPKVDPETGY-------KCLKHIDIMRKLGGLATEEGGGRGYFLLGDLVRMNLALQNYAIDFLAKKGYMPIYTPFFMTKEQMKKVAQLSQFDEELYTVTGEGEDKYLIATSEQPIAAFHLEKRFDESELPIKYCGMSTCFRKEVGADTLGIFRVHQFEKIEQFVVTSPKDNKSMFDEMIGNSEAFYQSLGIPYRVVNIVSGALNNAADLEAWFPGADEGNE--------------------------------RELVSCSNCTDYQ-TRRLEVKYGKSKKQGSEVEFCHNSTLTATSRTLCCIVENYQTPVPEVLQP....................................................................................................... 467
52 -18.0005e3i_A mol:protein length:438 Histidine--tRNA ligase  ali model follow..  15  11.....................................................................................................................................................................................................................................................................GFNDVLPTQTAAWRRLEQHLASLMDAYGYQQIRLPIVEQTGLFKRADATDIVEKEMYTFFDKGESLTLRPEGTAGCVRALVEH-NLLRGATPRVWYMGPMFRYEKPQK-----RYRQFHQFGVETFGVATPDID--AELIMLTARLWKRMGVDHMQRRLTTNPLRILDSKIESTQK-QQLQDYLTAAGIKFVINQK---YYNKTVFEWTTTALGSQGTVCA---------RYDGLVGQLKGKADQSVPAVGFAMG-MERLLLLLEQV---------VRDCEAFLVAEPAYQSKALVLAEQLRDQLEAANSNGSQGSMKSQMKKADQAGAVYAIILGEREWEAQQLAVKELATAEQSQVALAELVPFLIEKFTK........ 432
53 -17.9003vbb_A mol:protein length:522 Seryl-tRNA synthetase, cytoplasmic  ali model follow..  13  164.............................................................................................................................................................................................................................................VRKKYSHVDLVVMVDGFEGEKAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSDTRGIFRVHQFEKIEQFVYSSPNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAADLEAWFPGSGAFRELVSCSNCT----------------------------------DYQ-ARRLRIRYGQTKKMMDKVEFVHNATMCATTRTICAILENYQTEVPEKLKEGLQELIPVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNMEVTD..................................................... 513
54 -17.8002g4c_A mol:protein length:474 DNA polymerase gamma subunit 2  ali model follow..  11  4.............................................................................................................................................................................................................SGSTMDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAPGSGEGSEALLDSLLSGCHPGFGPLGVELRKNLAAEWWTSVFREQVFPVDALHHKPGPLLPGDSAFRLVSAETLREILQDKELKLRENLLHGALEHYVNCLDLVNRLPYGLAQIGVCFHPVFDTK-NGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKETLWNLGDHELLHMYPGNVSKLHGRDGRKNVV-PCV---LSVNGDLDRGMLAYLYD----QLTENSFTRKKNLHRKVLKLHPC-----------------------LAPIKVALDVGTLELRQVCQGLFNELLENGISVYLETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISSAK...... 466
55 -17.7003lsq_A mol:protein length:484 Seryl-tRNA synthetase  ali model follow..  13  171.............................................................................................................................................................................................................................................RAKLNHVSIMERLGMMDTSKAAGGRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGADTLGIFRVHQFDKIEQFVVCSQEESWRHLEDMITTSEEFNKSLGLPYRVVNICSGALNNAADLEAWFPASGAFRELVSCSNCT----------------------------------DYQ-SQSVNCRYGPNLRGTAVKEYCHNGTLCAITRTMCCICENYQTEIPDVLRP....................................................................................................... 459
56 -17.1004ztu_B mol:protein length:472 DNA polymerase subunit gamma-2, mitochondrial  ali model follow..  12  34...............................................................................................................................................................................................................................EAPGSGEGSEALLEICQRRHF--LSGSKQQLSDSLLSGCHPGFGPLGVELRKNLAAEWWTSVFREQVFPVDALHHKPGPLLPGDSAFRLVSAETLREILQDKELKLRENLLHGALEHYVNCLDLVNRLPYGLAQIGVCFHPVFDTK-NGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKETLWNLGDHELLHMYPGNVSKLHGRDGRKNVV-PCV---LSVNGDLDRGMLAYLYD----QLTENSFTRKKNLHRKVLKLHPC-----------------------LAPIKVALDVGTLELRQVCQGLFNELLENGISVYLETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISSAK...... 459
57 -17.1002dq3_A mol:protein length:425 Seryl-tRNA synthetase  ali model follow..  14  135.............................................................................................................................................................................................................................................DFEPKPHWEIGERLGILDFKRSGSRFTVIAGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLY--KCERDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGADIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLPYRVVELCTGDLGFSADIEVWFPSQNKYREISSCSNCE----------------------------------DFQ-ARRMNTRFKDSKTGKNRFVHTLNGSGLAVGRTLAAILENYQQEVPEVLRD....................................................................................................... 415
58 -16.9001g5h_A mol:protein length:454 MITOCHONDRIAL DNA POLYMERASE ACCESSORY SUBUNIT  ali model follow..  12  1.............................................................................................................................................................................................................WLSGYAGPADGTQQPDAPEHAVAREALVDLCRR-----RHFLSGTPQQLSTAALLSGCHAFGPLGVELRKNLASQWWSSMFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSLRATLLHGALEHYVNCLDLVNKLPFGLAQIGVCFHPVSNSNQSSVTRVGEKTEASLVWFTPTRTSSQWLDFWLRHRLLWWRKFAMSPSNFSSA----------------DCQDELGRKGSKLYYSFPWG-------------KEPIETLWNLGDQELLHTYPGNVSTIQGRDGRKNVVPCVLSVSG--DVDLTLAYLYDSFQ-KLHPCLAPIKVALDVGTVELRQVCQGLLNELLENGISV-SETVHSSLEQLHSKYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKLRDFLVKYLASAS...... 441
59 -16.5003w3s_A mol:protein length:527 Type-2 serine--tRNA ligase  ali model follow..  11  11............................................LTLSREVDPAEIEPTVE-------EFVKEANEDLLQRGVPTGKEGAKIESYYVLYDTIYMEITGTRYLRPHEAMRVRKRLAERLGRKHRVGVRDLKIPRYEVVLRFDREVTYVPVADDVVVEDGTVRLTFQDVDEEMLRRHVIDRVIRLVAWAVEERS------ELVERVTKVEPGTVVDESGPRRIRFRGDVTEEARRRGWVKE---------PGRGQWIYTPPMAALFEVLRDFLLERVRKLGFEPALFPKLIPLETMFRMRYLHGLPDGMYYVKLRDPGYVLAPAQCEPFYELLRDEVVDPERLPIKLYDCGWTYRWE-GGAAKGLERVNEFQRIEHVWIAEPEEAYRIRRELLEATKRVAEELELE---WKVVVSDDPFYLEGRLLEDRDIELPDVPS---------------YEFEVYLPFKGERSSEEAWISVG-SFNVHGEHFVDGFNVKEKSGRTLFTGCAGLG-VTRWVVGLLAQHGFYPYEWPEPILERI.................................................................................................. 509
60 -16.3002zni_A mol:protein length:308 Pyrrolysyl-tRNA synthetase  ali model follow..  14  9....................................................................................................................................................................................VPRGSHMFLTRRDPPLSSFWTKVQYQRLKELNASGEQL--MGFSDALSRDRAFQGIEHQLMSQGK---RHLEQLRTVKHRP-----------ALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMT--GEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLW-DKPIRIFEIGTCYRKESQGA----QHLNEFTM--LNLTELGTPLEERHQRLEDMARWVLEAAGIREFELVTESSVDEKWEIFDPWVGLGFGLERLLMIREGTQHVQSARSLSYGVRLNIN............................................................................................................................................................................. 302
61 -16.3003ikl_A mol:protein length:459 DNA polymerase subunit gamma-2, mitochondrial  ali model follow..  13  13....................................................................................................................................................................................VCRCLLSGFGGRVDAGQLLTERSSPKGGHVKSHAELEGNGEHPEAPGSGEGSEALLEICQRRHFLSGSKQQ-LSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALH-------------HKPGPLLPGDSAFRGGLRENLLHGALEHYVNCLDLVNRLPYGLAQIGVCFHPVFDTK-NGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSS----------------DCQDEEGRKGNKLYYNFPWG-------------KELIETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNG--DLDRMLAYLYDSFQ-KLHPCLAPIKVALDVGTLELRQVCQGLFNELLENGISVYLETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISSAK...... 451
62 -16.3003err_A mol:protein length:536 fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA synthetase from Thermus thermophilus  ali model follow..  11  1MVDLKRLRQEPEVFHRAIREKGVALDLEALLAVDEQLHKQQEVIADKQMSVKEDDKVEPAVIEAQNAVKSIKKQHL-----VEVRSMANPPAAVKLALES--IALLLGESTTDWKQIRSIIMR-ENFIPTIVNFSAEEISDAIREKM-KKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLEALLLQVVGGEEANREIKRVGGPPEFSFPPLDHVALMEKNGWWEPRISGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVW--AIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSDVRGLMRVHQFHKVEQYVLTEASLEASDFQELLENAEEILRLLELPYRLVEVATGDMGPGKDIEVYLPSEGRYRETHSCSALL----------------------------------DWQ-ARRANLRYRDPEGRVRYAYTLNNTAL-ATPRILAMLLENHQLQVPQALIP....................................................................................................... 519
63 -16.0003od1_A mol:protein length:400 ATP phosphoribosyltransferase regulatory subunit  ali model follow..  13  1.......................................................................................................................................................................................................................................................SNAMSKPFMFEKPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVS--AILDQQLFKLDQQGNTLVLRPDMTAPIARLVASSLKD-RAYPLRLAYQSNVYRAQQNEG-----KPAEFEQLGVELIGDGTASAD--GEVIALMIAALKRAGLSEFKVAIGHVGREHVKSLNLSTIDKSRLMNLLSLRGGRAAIEEARGLIQTEKGK-KLYEVLESYGASEYVKFDLTLVLHMSY-YTG---------VVFEGYGNRLGVPLC-LLSKFHRPAQA-SNGHEQTCILFSNERRFEAIELARKKRANGEAVVLQDLAGVTDVDAMSSNYQDVIYCIGTAGRGGEDA...................................... 400
64 -15.9001ser_A mol:protein length:421 PROTEIN (SERYL-TRNA SYNTHETASE (E.C.6.1.1.11))  ali model follow..  12  115...............................................................................................................................................................................................................................EANREIKRVGGPPEFSFPPLDHVALMEKNGWWEPRSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVW--AIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSDVRGLMRVHQFHKVEQYVLTEASLEASDFQELLENAEEILRLLELPYRLVEVATGDMGPGKDIEVYLPSEGRYRETHSCSALL----------------------------------DWQ-ARRANLRYRDPEGRVRYAYTLNNTAL-ATPRILAMLLENHQLQVPQALIP....................................................................................................... 410
65 -15.2003hvz_A mol:protein length:78 Uncharacterized protein  ali model follow..  18  8.VFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVDGRIVPIDYKVKTGEIIDVLTTKELE................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 72
66 -15.2002kmm_A mol:protein length:73 Guanosine-3`,5`-bis(Diphosphate) 3`-pyrophosphohydrolase  ali model follow..  21  3.VMVFTPKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVLSSKSLE................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 67
67 -14.5004cs2_A mol:protein length:274 PYRROLYSINE--TRNA LIGASE  ali model follow..  15  8................................................................................................................................................................................................................................QTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMG--DNDTELSKQIFRVDKNFCLRPMLAPNLANYLRKLDRALPD-PIKIFEIGPCYRKESDGK-----HLEEFTMLNFCQMGSGCTREN----LESIITDFLNHLGID.................................................................................................................................................................................................................................... 187
68 -14.2003qtc_A mol:protein length:290 Pyrrolysyl-tRNA synthetase  ali model follow..  15  7.................................................................................................................................................................................................................PRGSHGASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMG--DNDTELSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPD-PIKIFEIGPCYRKESDGK-----HLEEFTMLVFWQ-----------------------------------------MGSGCTRENLESIITDFLNHLGIDFKIVGDSCMVFGDTLDVMHGDLELSSALVGPIPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRAARSESYY..................................................................................................................... 275
69 -13.6004q6g_A mol:protein length:267 Pyrrolysine--tRNA ligase  ali model follow..  15  7................................................................................................................................................................................................................................QTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMG--DNDTELSKQIFRVDKNFCLRPMVAPNIFNYARKLDRALPD-PIKIFEIGPCYRKESDGK----EHLEEFTMLNFFQMGSGCTREN----LESIITDFLNHLGIDF................................................................................................................................................................................................................................... 187
70 -13.5004bw9_A mol:protein length:291 PYRROLYSINE--TRNA LIGASE  ali model follow..  14  10.................................................................................................................................................................................................................PRGSHMASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMG--DNDTELSKQIFRVDKNFCLRPMLAPNLGNYLRKLDRALPD-PIKIFEIGPCYRKESDGK-----HLEEFTMLNFCQMGSGCTREN----LESIITDFLNHLGIDF................................................................................................................................................................................................................................... 205
71 -13.2005k1p_A mol:protein length:274 Pyrrolysine--tRNA ligase  ali model follow..  15  1......................................................................................................................................................................................................................MPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQ---IYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGI-DNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPD-PIKIFEIGPCYRKESDGK----EHLEEFTMLAFAQMGSGCTREN----LESIITDFLNHLGIDFKIVGDSC............................................................................................................................................................................................................................ 195
72 -13.0003kew_A mol:protein length:241 DHHA1 domain protein  ali model follow..  16  34..............................LDQTAFFPGGGGQMGDLEKEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANTCGFHLGKE---ISTVDIVGFLDEKTIREAEKEANRLIFENLEVKSYAPSKKELK----------KVKTRRALPKTDEEIRIVEIVGLLNACCGVHPRNTRDLQVIKIRRW--------EKHKNATRIEYVA.................................................................................................................................................................................................................................................................................................................................................................................................................................... 227
73 -11.2003rac_A mol:protein length:373 Histidine-tRNA ligase  ali model follow..  11  24.................................................................................................................................................................................................................................................................DRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFDGGGDAVALRPEMTPSIARMAAPRVAA-GRTPIRWCYCERVYRRTDDPASLSWAKAAESTQVGIERIGEEASVDVDM-DVLRLLHEASAAAGVRHHRIVVSHARPRLLDALGISASLSRAFLACLTSGNYLHAAKDVDLLANLLTWSPAERDAAKRSREASDRELEALLRDAVDPEALHDSGLASDVVTFDLALHRELDYYTGLVFEMFAPGVGAPIA---------GGRYDELLAQFGAGAPAVGFAFEVERVMAVLEAQ............................................................. 366
74 -10.9002e3c_A mol:protein length:291 Pyrrolysyl-tRNA synthetase  ali model follow..  15  2...............................................................................................................................................................................................................GSSSSGLVPR---LTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMG--DNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPD-PIKIFEIGPCYRKESDGK----EHLEEFTMLNFCQMGSGCTREN----LESIITDFLNHLGIDFKIVGDSC............................................................................................................................................................................................................................ 212
75 -10.7001z7m_A mol:protein length:344 ATP phosphoribosyltransferase regulatory subunit  ali model follow..  13  21.....................................................................................................................................................................................................................................................................ESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTESNGKTFNQEKMFQFKHEGQSITLRYDFTLP---LVRLYSQIKDSTSARYSYFGKIFRKEKRHK-----RSTENYQIGIELFGESADKSE--LEILSLALQVIEQLGLNKTVFEIGS----FQRLCQLADGSTELLTELLLKKDLSGLNAFIEKNNFSKELEIFITNELSRLENLVTNTKDDVLISSFDLKEFSEKLSMIKPIIIDLGMVPKMDYYTDLMFKAYSSAANQPIL---------GGRYDQLLSNFQEEAFAIGFCCHMDTILKALERQ............................................................. 331

FFAS is supported by the NIH grant R01-GM087218-01
1 2 7 4 5 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.