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Query: 2cim_A mol:protein length:522 SERYL-TRNA SYNTHETASE, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSSSSGLVPRGSHMKLQFNLKAYFKTSADPTPAKDAIAALFEEANSTLLTRGAPEGQGAKVTEWKLGEDRIELTLQSGRYVRVHDAIFRLRKQLAEALGKKYKIGIRGIEVESFIIKVPADHELRMLKVPYIKSMENIEGGIQLELEVGEAEMKNRVPDRILTLLEEKIEAAQYGAKAEHWNLLWQREPMEHPFKEDPTQAMMKEGWLKRGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDILDIEWRKARVTPWFMAQEGLLGLAEENTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKYPKGFNVKLQSGDELWSGCSGVGLERWAAVFLAQKGLDPANWPEEFRNRVGEMPKGIRFLLast
1 -172.0002cim_A mol:protein length:522 SERYL-TRNA SYNTHETASE  ali model  100  1MGSSSSGLVPRGSHMKLQFNLKAYFKTSADPTPAKDAIAALFEEANSTLLTRGAPEGQGAKVTEWKLGEDRIELTLQSGRYVRVHDAIFRLRKQLAEALGKKYKIGIRGIEVESFIIKVPADHELRMLKVPYIKSMENIEGGIQLELEVGEAEMKNRVPDRILTLLEEKIEAAQYGAKAEHWNLLWQREPMEHPFKEDPTQAMMKEGWLKRGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDILDIEWRKARVTPWFMAQEGLLGLAEENTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKYPKGFNVKLQSGDELWSGCSGVGLERWAAVFLAQKGLDPANWPEEFRNRVGEMPKGIRFL 516
2 -119.0003w3s_A mol:protein length:527 Type-2 serine--tRNA ligase  ali model follow..  30  1..............MELKFSAEVELTLSREVDPAEPTVEEFVKEANEDLLQRGVPTKEGAKIESYYVLYDTIYMEITGTRYLRPHEAAMRVRKRLAERLGRKHRVGVRDLKIPRYEVVLRFDREVTVGYVPVADDVVVEDGTVRLTFQVDEEMLRRHVIDRVIRLVAWAVEEVERVTKVEPGTVVDESGPRRIRFRGDVTEEARRRGWVKEFPGRGQWIYTPPMAALFEVLRDFLLERVTRKLGFEPALFPKLIPLETMFRMRYLHGL-PDGMYYVCPPKRDPELFDDFKRELYVWGELNERTLGEKLRDPGYVLAPAQCEPFYELLRDEVVDPERLPIKLYDCSGWTYRWEGGAAKGLERVNEFQRIEHVWIAEPEEAYRIRRELLEATKRVAEELELEWKVVVSDDPFYLEGRLEDRDIELPDVPSYEFEVYLPFKGSEEAWISVGSFNVHGEHFVDGFNVKEKSGRTLFTGCAGLGVTRWVVGLLAQHGFYPYEWPEPILERIDEKFGGLPEV 519
3 -75.6004h2w_A mol:protein length:346 Amino acid--[acyl-carrier-protein] ligase 1  ali model follow..  16  1.....................................................................................................................................................................MGSSSSGLVPRGSHMNIAVL-PNSPDTAPQIADPLDHLADKLFH-SMGSDGVYARTALYESIVERLAALITS--HREAGTEALRFPPVMSRAQLEKSGYLKSF-PNLLGCVCGLHGTEREINAAVSRFDAGGD-----WTTSLSPADLVLSPAACYPVYPIAASRGPLPKG---LRFDVAADCFRREPS--KHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLGLTFRVDYASDPFFGRAGKMLANNQRDQQLKFELLIPLR---SEEQPTACMSFNYHREHFGTTWGIQDANGEPAHTGCVAFGMDRLAVAMFHTHGTDLSAWPAKVRDILGLQPH..... 329
4 -74.2003mey_A mol:protein length:346 Bll0957 protein  ali model follow..  15  1.....................................................................................................................................................................MGSSSSGLVPRGSHMNIAVL-PNSPDTAPQIADPLDHLADKLFH-SMGSDGVYARTALYESIVERLAALITS--HREAGTEALRFPPVMSRAQLEKSGYLKSF-PNLLGCVCGLHGTEREINAAVSRFDAGGD-----WTTSLSPADLVLSPAACYPVYPIAASRGPLPKG---LRFDVAADCFRREPS--KHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLGLTFRVDYASDPFFGRVGQMKAVSQKQQQLKFELLIPLR---SEEQPTACMSFNYHREHFGTTWGIQDANGEPAHTGCVAFGMDRLAVAMFHTHGTDLSAWPAKVRDILGLQPHVAA.. 332
5 -42.6005xip_A mol:protein length:498 Prolyl-tRNA synthetase, putative  ali model follow..  15  1......................................................................................................................................................................................GAMGVTAKKSTNFADWYTQVIVRGELVEYYDISGCYIIRPWAYRIWEAVQKFFDDGI-KRLGVENCYFPMFVSQAKLKEKDHVEGFKPEVAWVTHYGDSELPE--------------------------KVAIRPTSETIMYPAYAKWIRSHRDLPLKLNQW-NNVVRWEFKQPTPFLRTREFLWQEGHTAATEEEAYTLVLEILELYRQWYEDYLAVPVIKGEKSE------------NEKFAGGKKTTTIEGIIPDTGRGIQAATSHLLGQNFSRMFSIEFEDEKLVHQTSWGCTT-RSLGVMIMTHGDDKGVLPVAVQAVIIPI....... 296
6 -42.0004k86_A mol:protein length:535 Proline--tRNA ligase  ali model follow..  14  2...........................................................................................................................................................GSSSSGLVPRGSHMASGAGEGQGPKKQTRLGLEAKKEENLADWYSQVITKSEMIEYHDISGCYILRPWAYAIWEAIKDFFDAEI-KKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTEL-------------------------AEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQW-CNVVRWEFKHPQPFLRTREFLWQEGHSAATMEEAAEEVLQILDLYAQVYEELLAIPVVK---------GRKTEKEKFAGGDYTTTIEAFIS---ASGRAIQGGTSHHLGQNFSKMFEIVFEDPKKQFAYQNSWGLTRTIGVMTMVHGDNMGVLPACVQVVIIPC....... 326
7 -41.4004ncx_A mol:protein length:506 Proline--tRNA ligase  ali model follow..  16  3.....................................................................................................................................................................................SNILGITSKKIENFSDWYTQVIVKSELIEYYDISGCYILRPAAYYIWECVQAFFNKEI-KKLNVENSYFPLFVTKNKLKEKNHIEGFSPEVAWVTKYGDSNLP--------------------------EEIAIRPTSETIMYSVFPKWIRSYRDLPLKLNQW-NTVVRWEFKQPTPFIRTREFLWQEGHTAKNEEEAVKLVFDILDLYRRWYEEYLAVPIIK---------GIKSEGEKFGGANFTSTAEAFIS---ENGRAIQAATSHYLGTNFAKMFKIEFEDENYVHQTSWGCT-TRSIGIMIMTHGDDKGVLPSKYKVVIVPIFY..... 301
8 -40.7005xif_A mol:protein length:500 Prolyl-tRNA synthetase (ProRS)  ali model follow..  15  2........................................................................................................................................................................................AMVTAKKDENFSEWYTQAIVRSEMIEYYDISGCYIMRPWAFHIWEKVQRFFDDEI-KKMGVENSYFPMFVSRHKLKEKDHVEGFSPEVAWVTHYGDSPLPE--------------------------KIAIRPTSETIMYPAYAKWIRSHRDLPLKLNQW-CSVVRWEFKQPTPFLRTREFLWQEGHTAATEEEAWELVLDILELYRRWYEECLAVPVIKGEKSE------------GEKFAGGKKTTTVEAFIPENGRGIQAATSHLLGTNFAKMFEIEFEDEELVHQTSWGCTT-RSLGVMIMTHGDDKGVIPASVQVVIIPI....... 295
9 -40.6001nyq_A mol:protein length:645 threonyl-tRNA synthetase 1  ali model follow..  13  65..........GSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLEL-IDAIPEDENVTLYSQGDFTDLCRGVHVPSTAKIKEFKLL--STAGAYWRGDSNNKML----QRIYGTAFFDKKELKAHLQMLEERKERDHRKIGKEL-ELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSM-GYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETE-----------------------------SMVLRPMNCPHHMMIYANKPHSYRELPIRIAEL-GTMHRYESGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPSTAQLDFLPERFDLTYIGQDVIHRGVVS-TMERFVAFLTEETKGAFPTWLAPKQVQIIPVNV..... 555
10 -40.5005f9y_A mol:protein length:511 Aminoacyl-tRNA synthetase  ali model follow..  17  2................................................................................................................................................................................ASKENESLLGITADKITSFADWYSQVIVKSEMIEYYDISGCYILRPWSYFIWETIQSVFDQKI-KQHDVQNAYFPIFVTQKKLTEKDHVEGFSPEVAWVTKSGKSDLAE--------------------------PIAIRPTSETIMYPYFAKWIRSHRDLPLKINQW-TSIVRWEFKHPTPFIRTREFLWQEGHTASTRKEALEMVDIILNEYASIYEDLLATPVVK---------GTKSENEKFPGGDITKSIEGFIP---EIGRAVQAATSHLLGQNFSKMFGVEFEDEKYAHQTSWGLT-TRAIGVMIMTHGDNKGVLPAPVQVIIIPIIFKTV.. 308
11 -40.1001qf6_A mol:protein length:642 THREONYL-TRNA SYNTHETASE  ali model follow..  12  63..........KDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLM--KTAGAYWRGDSNNKML----QRIYGTAWADKKALNAYLQRLEEAAKRDHRKIGKQL----YHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEY-QYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTT-------------------------------SSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEF-GSCHRNESGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPGTVQLDFLPSRLSASYVGEDMIHRAILG-SMERFIGILTEEFAGFFPTWLAPVQVVIMNITD..... 549
12 -39.8004hvc_A mol:protein length:519 Bifunctional glutamate/proline--tRNA ligase  ali model follow..  15  6...............................................................................................................................................................................GQGPKKQTRLGLEAKKEENLADWYSQVITKSEMIEYHDISGCYILRPWAYAIWEAIKDFFDAEI-KKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTEL-------------------------AEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQW-CNVVRWEFKHPQPFLRTREFLWQEGHSAATMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKFAGGDYTTTIEAFIS------------ASGRAIQGGTSHHLGQNFSKMFEIVFEDPKKQFAYQNSWGLTRTIGVMTMVHGDNMGVLPACVQVVIIPC....... 310
13 -39.1005xil_A mol:protein length:512 Putative prolyl-tRNA synthetase  ali model follow..  16  1......................................................................................................................................................................................GAMGIAAKREENFSAWYIDVITKAEMIEYYDVSGCYIIRPWAYYVWKCVQRFLGGKI-EKLGVEDCYFPMFVSRSCLREKDHIEGFAPEVAWVTRAGDTELEQ--------------------------PVAVRPTSETVMYPYYAKWIRSHRDLPVRLNMW-NNVIRWEFSHPTPFIRTREFLWQEGHCAAKAEECAKEVLEILECYASVYEQLLAVPVVR---------GRKTEKEKFAGGDYTTTVETFIE---AVGRGCQGATSHNLGQNFGKMFDIRFQDPETLIPWQNSWGLTRVIGVMIMVHGDNRGVMPASTQVIIIPV....... 298
14 -39.1001nj8_A mol:protein length:459 Proline-tRNA Synthetase  ali model follow..  18  1............................................................................................................................................................................................GSHMLEFSEWYSDILEKAEIYVRYPIKGCGVYLPYGFKIRRYTFEIIRNLL-DESGHDEALFPMLIPEDLLAKEAHIKGFEDEVYWVTHGGKTQ--------------------------LDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQI-VNTFRYETKHTRPLIRLREIMTFK-TAHSTKEEAENQVKEAISIYKKFFDTLGIPYLISKRPEW--------------DKFPGAEYTMAFDTIFPDGRTMQIATVHNLGQNFSKTFEIIFETPTYAYQTCYGISD-RVIASIIAIHGDEKGILPAPIQVVIVPLIF..... 292
15 -39.0003ial_A mol:protein length:518 Prolyl-tRNA synthetase  ali model follow..  16  2..................................................................................................................................................................................AMGGDVTFSLTKTRDTFADWFDAIMDAAELVDRYPVKGCVVFRPYGFFMENAIMRLCEEEY-AKVGISQILFPTVIPESFLKESDHIKGFEAECFWVEKGGLQP--------------------------LEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQT-CTIFRHETKNTKPLIRVREIHWNEAHCCATAEDAVSQLSDYWKVIDTIFSDELCFKGQKLRRVCWDRFPGADYSEVSDVVM-------------PCGRVLQTAGIHNLGQRFSSTFDILYANKAHPYLTCAGIS-TRVLACALSIHGDSGGVLPAPIHVVIIPIGCGKK.. 306
16 -38.6003qne_A mol:protein length:485 Seryl-tRNA synthetase, cytoplasmic  ali model follow..  14  3.............................DINAFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDL---------DEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVDSQDEENNEL------VRTWTPENYKKPEQIAAATGAPAKLSHHEVLLRLYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLSFLSSK-GYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVID-------------------------------GEDEKYLIATSEQPISAYHAGEWFPAEQLPVRYAGY-SSCFRREAGSAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVS----------GELNNAAAKKYDLEAWFP---FQQEYKELVSCSNCTDYQSRNLEIRCQEKKYVHCNSTLSATERTICCILENYQKEDGLVPEVLRKYI.......... 435
17 -36.8001h4q_A mol:protein length:477 PROLYL-TRNA SYNTHETASE  ali model follow..  15  10..............................................................................................................................................................................................QSQDFSEWYLEVIQKAELADYGPVRGTIVVRPYGYAIWENIQQVLDRMF-KETGHQNAYFPLFIPMSFLKEAEHVEGFSPELAVVTHAGGEELEE--------------------------PLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQW-GNVVRWEMR-TRPFLRTSEFLWQEGHTAATREEAEEEVRRMLSIYARLAREYAAIPVIEGL-------------KTEKEKFAGAVYTTTIEALMKDGKALQAGTSHYLGENFARAFDIKFQDRDYVHTTSWGL-SWRFIGAIIMTHGDDRGVLPAPIQVVIVPIYKDES.. 300
18 -36.0002dq3_A mol:protein length:425 Seryl-tRNA synthetase  ali model follow..  17  5...................................NLIREKPDYVKERLATRDKELVS--------LVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEE----------------------ELKNTLLWIPNLPHPSVPVGEDEKDNVEVRRWGEPRKFDFEPKPGILDFKRGAKLSGSRFTVIAGWGARLERALINFMLDLHTKK-GYKEICPPHLVKPEILIGTGQLPKFEEDLY---------------------------------KCERDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAY-TPCYRREAGAIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLPYRVVELCT----------GDLGFSAAKTYDIEVWFP---SQNKYREISSCSNCEDFQARRMNTRFKDSRFVHTNGSGLAVGRTLAAILENYQQEDGS-PEVLRDYVG......... 418
19 -35.6002i4l_A mol:protein length:458 Proline-tRNA ligase  ali model follow..  14  1....................................................................................................................................................................MGSSSSGLVPRGSHMRLSRFFLPILKENPKEAEIVSHRLMLRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREEQ-NRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADR------------------------------HKRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHI-QWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAARKSYNKMFVAYLRTFARMGLKAIMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDRGIEVGQIFYFGTKYSDSMKANVTGPDPIHGGSYGVGVSRLLGAIIEACHDDNGIWPAPFRVTILNLKQ..... 369
20 -35.3003vbb_A mol:protein length:522 Seryl-tRNA synthetase, cytoplasmic  ali model follow..  13  4.............................DLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRA---------DNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAEEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSR-GYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEK----------------------SDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGL-STCFRQEVGSTRGIFRVHQFEKIEQFVYSSPNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVS----------GSLNHAASKKLDLEAWFP---GSGAFRELVSCSNCTDYQARRLRIRYGQTEFVHMNATMCATTRTICAILENYQTEKGTVPEKLKEFMPP........ 462
21 -35.0001nj1_A mol:protein length:501 Proline-tRNA Synthetase  ali model follow..  16  1.................................................................................................................................................................MGSSSSGLVPRGSHMQKPIKKDPNRYHGEKMTEFSEWFHNILEEAEIIDRYPVKGMHVWMPHGFMIRKNTLKILRRIL--DRDHEEVLFPLLVPEDELKEAIHVKGFEDEVYWVTHGGLSK--------------------------LQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQV-VNTFRYETKHTRPIRVREITTFKEAHIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPW--------------DKFPGSEYTVAFDTLMPDGKTLQIGTVHNLGQTFARTFEIKFETPEYVHQTCYGL-SDRVIASVIAIHGDESGCLPAAHQVVIVPI....... 316
22 -34.6004p3n_A mol:protein length:415 Threonine--tRNA ligase, cytoplasmic  ali model follow..  15  2............................................................................................................................................................................................GSSSSGDHRKIGRDQ----YFFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKR-GFQEVVTPNIFNSRLWMTSGHWQHYSENMFSF-------------------------------EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADF-GVLHRNESGALTGLTRVRRFQQDDAHIFCAMEQIEDEIKGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDGAFYGPATIQLDFLPIRFNLTYVSHDIVHRAILG-SVERMIAILTENYGGKWPFWLSPRQVMVVPVGP..... 314
23 -34.3001ser_A mol:protein length:421 PROTEIN (SERYL-TRNA SYNTHETASE (E.C.6.1.1.11))  ali model follow..  14  27...................................................................LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRL------------------------EEALREKEARLEALLLQVPLPPWPGAPVGGEEANREIKRVGGPPEFSFPPLDHVAWWEPRISQVSGSRSYALKGDLALYELALLRFAMDFMARR-GFLPMTLPSYAREKAFLGTGHFPAYRDQVW---------------------------------AIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGY-APAFRSEAGSVRGLMRVHQFHKVEQYVLTEAEASDRAFQELLENAEEILRLLELPYRLVEVAT----------GDMGPGKWRQVDIEVYLP---SEGRYRETHSCSALLDWQARRANLRYRDPEYAYTNNTALATPRILAMLLENHQLQDGR-PQALIPYMG......... 413
24 -34.1002dq0_A mol:protein length:455 Seryl-tRNA synthetase  ali model follow..  15  5...................................KLIRENPELVKNDLIKRGEL-------EKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGKDENDNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILEWKPKLHVDLADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRLIEK-GFTPVIPPYMVRRFVEEGSTSFEDFEDVIY---------------------------------KVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGV-SPCFRKEAGTTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIPYRVVNICT----------GDLGYVAAKKYDIEAWMP---GQGKFREVVSASNCTDWQARRLNIRFRDRRYVHTNSTAIATSRAIVAILENHQEEDGT-PKVLWKYTG......... 439
25 -34.0003err_A mol:protein length:536 fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA synthetase from Thermus thermophilus  ali model follow..  13  7LRQEPEVFHRAIREKGVALDLEALLAVDEQLHKQQEVIADKQMSVKEDLDKEPAVIEAQNAVKSIKALESIALLLGESTTDWKQIRSIIMRENFIPTIVNFSEKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKQKLEALLLQVPLPPWPGAPVGGEEANREIKRVGPPEFSFPPLDHVALMEKNGWSQVSGSRSYALKGDLALYELALLRFAMDFMARR-GFLPMTLPSYAREKAFLGTGHFPAYRDQVW---------------------------------AIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGY-APAFRSEAGSVRGLMRVHQFHKVEQYVLTEASASDRAFQELLENAEEILRLLELPYRLVEVAT----------GDMGPGKWRQVDIEVYLP---SEGRYRETHSCSALLDWQARRANLRYRDPEYAYTNNTALATPRILAMLLENHQLQDGR-PQALIPYMG......... 522
26 -33.9004hwt_A mol:protein length:413 Threonine--tRNA ligase, cytoplasmic  ali model follow..  16  15...............................................................................................................................................................................................................YFFHELSPGSCFFLPKGAYIYNALIEFIRSEYRKR-GFQEVVTPNIFNSRLWMTSGHWQHYSENMFSF-------------------------------EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADF-GVLHRNESGALTGLTRVRRFQQDDAHIFCAMEQIEDEIKGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGDIEVWDQAEKQLENSLNEFGEKWELNSGDGAFYGPATIQLDFLPIRFNLTYVSHDIVHRAILG-SVERMIAILTENYGGKWPFWLSPRQVMVVPVGP..... 310
27 -33.2006blj_A mol:protein length:485 Serine-tRNA ligase  ali model follow..  14  20.....................................................IRESQRRRFADVTLVDKVIELDEVWRATIGKLNHIKSFTGIISKEVGNRMKNKVPLGDDLELPKEVTDDVYALFTKEALEQGSLAKLNTNQLKKL-EEVKQKEKERDDVLLQIGNIVHETVVVSDNEDNNGIVRMVGNPRPKVDPETGGGLATEEGTQVGGGRGYFLLGDLVRMNLALQNYAIDFLAKK-GYMPIYTPFFMTKEQMKKVAQLSQFDEELYTVTG-------------------------------EGEDKYLIATSEQPIAAFHLEKRFDESELPIKYCGM-STCFRKEVGATLGIFRVHQFEKIEQFVVTSPKDSWEMFDEMIGNSEAFYQSLGIPYRVVNIVS----------GALNNAAAKKFDLEAWFPGADEGNEYRELVSCSNCTDYQTRRLEVKYGEVEFCHMNSTLTATSRTLCCIVENYQTEGVNVPEVLQPYMGGTK...... 473
28 -33.2002j3l_A mol:protein length:572 PROLYL-TRNA SYNTHETASE  ali model follow..  14  2...................................................................................................................................................................................KQSKMLIPTLREVPNDAEVLSHQILLRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREEF-EKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDR------------------------------NDRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTK-YRDEKRSRSGLLRGREFIMKDGYSFADEASLDQSYRDYEKAYSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEDVNDVKLKNFLGADFAFTKGIEIGHIFKLGTRYSDAMGATVLDENSVIMGCYGIGVSRLLSAIVEQNADERGNWPTGIAPF........... 471
29 -33.1003lsq_A mol:protein length:484 Seryl-tRNA synthetase  ali model follow..  14  10.........................................IQLFRDETGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQ-SDQVAGLAKEAQQLEEERDKLMLNVGNILHESVPIAQDEETGNTVVRTFGNTTKRAKLNHMMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLDFLVKR-GYTPFYPPFFLNRDVMGEVAQLSQFDEELYQV-------------------------------SGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGM-STCFRKEAGATLGIFRVHQFDKIEQFVVCSQEESWRHLEDMITTSEEFNKSLGLPYRVVNICS----------GALNNAAAKKYDLEAWFP---ASGAFRELVSCSNCTDYQSQSVNCRYGPNEYCHMNGTLCAITRTMCCICENYQTEGVVIPDVLRPYMMGIE...... 465
30 -32.1003ugq_A mol:protein length:460 Threonyl-tRNA synthetase, mitochondrial  ali model follow..  15  6...................................................................................................................................................................SGLVPRGSHMASATKNAS-------SATPATMTSMVSQRQ----FMTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVET----------------------------TDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDF-SPLHRNESGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAFYGPATIQLDFLPERFDLKFKDQDMIHRATFG-SIERFMALLIDSNEGRWPFWLNPYQAVIIPVNT..... 349
31 -32.0001wle_A mol:protein length:501 Seryl-tRNA synthetase  ali model follow..  13  38...................................ESLCAYPEDAARALDLRKGE-------LRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRK--------------QLTLLYPKEAQLEEQFYLRALRLPNQTHPDVPVGDESQARVLHVVGDKQPRGHLEIAEKLIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLIHR-GFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFE-----------------------------DLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCS-STCYRAETDTPWGLYRVHHFTKVEMFGVTGPEQSSELLEEFLSLQMEILTELGLHFRVLDMPT----------QELGLPAYRKFDIEAWMP---GRGRFGEVTSASNCTDFQSRRLHIMFQTEQFAHTNATGCAVPRLLIALLESYQQKDGS-PPALQPYLG......... 463
32 -31.9003a31_A mol:protein length:471 Probable threonyl-tRNA synthetase 1  ali model follow..  13  2.............................................................................................................................................................................ASGQDKTHIDYAYELDITVKPDSRVPVFNR-----FATFTGAGVPLFSLGGGPIRYALAEVLAKFHARR-GYYVVETPIIASTELFKVSGHIEFYRNNMYLF-------------------------------DIEGHEFAVKPMNCPYHILLFLNEVRSKLPLPFKVFEF-GRVHRYESGSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFKLSMSDKSLIGKEFMGSKEEWEGAEEALREAASRINEKYESGVSKEWQMGTIQF---NLPRRFRLYDVVREIIHRALLG-SIERFLGVYLEHRRGRMPFTLAPIQFAVIAVKTG.... 349
33 -30.8004hwo_A mol:protein length:411 Threonine--tRNA ligase  ali model follow..  14  15...............................................................................................................................................................................................................YHMQEEAPGMVFWHNDGWTIFRELEVFVRSKL-KEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTT-------------------------------SSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEF-GSCHRNESGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPGTVQLDFLPSRLSASYVGEDMIHRAILG-SMERFIGILTEEFAGFFPTWLAPVQVVIMNITD..... 310
34 -28.4005ucm_A mol:protein length:579 Proline--tRNA ligase  ali model follow..  14  6.....................................................................................................................................................................................SQYLLSTLKETPADAVVISHQLLLRAGMIRRLASGLYTWLPMGLRVLRKVETIVREEM-NAAGALEVLMPAVQPAELWQESGRWEQYGPELLRLKDR------------------------------HEREFCVGPTHEEVITDLARNELNSYKQLPINFYQIQTK-FRDEIRPRFGLMRGREFIMKDAYSFLSQDSLQQTYDGMYQAYSKIFSRLGLDFRPVQASHEFHVLANSGEDDIVFSDSSDYAANIEKAEAVPRERGIEVGHIFQLGTKYSEAMKLSVLSEQNLIMGCYGIGVSRVVAAAIEQNHDERGLWPSALAPF........... 474
35 -25.9001b76_A mol:protein length:442 Glycine--tRNA ligase  ali model follow..  10  6....................................................................................................................................................................................................DELVALCKRRGFIFQSGLQGVYDYGPLGVELKNNLKQAWWRRNVERDDMEGLDASVLTHRLVLHYSGHEATFADPMV--------DNAKARYWTPPRYFNMMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSKLGFGIAQI-GKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQ-------QPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQRDPETGKWFVPYVIEPSAGVDRGVLALLERIVLKLKPQLAPIKVAVIPLVK..... 345
36 -19.0005k1p_A mol:protein length:274 Pyrrolysine--tRNA ligase  ali model follow..  16  58................................................................................................................................................................................................................................GKLEREITRFFVD-----RGFLEIKSPILIPLEYIERMG--------------------------------IDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPD-PIKIFEI-GPCYRKESDGKE---HLEEFTMLAFAQMGSGCTREN----LESIITDFLNHLGIDFKIVGDSCMVYGDTLDVM-----------------------HGDLELSSAVVGPIPLDREWGIDKP--------GAGFGLERLLKV.............................. 244
37 -18.5004tqd_A mol:protein length:291 Pyrrolysine--tRNA ligase  ali model follow..  16  72.............................................................................................................................................................................................................................NYLGKLEREITRFFVDR-----GFLEIKSPILIPLEYIERMG--------------------------------IDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPD-PIKIFEI-GPCYRKES---DGKEHLEEFTMLSFIQMGSGCTREN----LESIITDFLNHLGI-----------------------DFKIVGDSCMVYGDTLDVMHGDLELSSAVVGPIPLDREWGIDKP--------GAGFGLERLLKV.............................. 261
38 -18.4004q6g_A mol:protein length:267 Pyrrolysine--tRNA ligase  ali model follow..  16  57................................................................................................................................................................................................................................GKLEREITRFFVD-----RGFLEIKSPILIPLEYIERMG--------------------------------IDNDTELSKQIFRVDKNFCLRPMVAPNIFNYARKLDRALPD-PIKIFEI-GPCYRKES---DGKEHLEEFTMLNFFQMGSGCTREN----LESIITDFLNHLGIDFKIVGDSCSVYGDTLDVM-----------------------HGDLELSSAVVGPIPLDREWGIDKP--------GAGFGLERLLKV.............................. 243
39 -18.4002zni_A mol:protein length:308 Pyrrolysyl-tRNA synthetase  ali model follow..  13  78..........................................................................................................................................................................................................................LRTVKHRPALLELEEKLAKAL-HQQGFVQVVTPTIITKSALAKMT--------------------------------IGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDK-PIRIFEI-GTCYRKES---QGAQHLNEFTMLNLTELG--TPLEERHQRLEDMARWVLEAAGIREFELVTE----------------------SSVVYGDTVDVMKGDLELASGAMGPHFLDEKWEIFDP---------LGFGLERLLMIREGTQHVQSMARSLSYLD............ 295
40 -18.3001ati_A mol:protein length:505 GLYCYL-TRNA SYNTHETASE  ali model follow..  11  6....................................................................................................................................................................................................DELVALCKRRGFIFQSSEQGVYDYGPLGVELKNNLKQAWWRRNVERDDMEGLDASVLTHRLVLHYSGHEATFADPMVEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMRGLLAYLRPETAQGIFVNFKNVLDATSKLGFGIAQI-GKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWWQEMGL-------SRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQRDPETGKWFVPYVIEPSAGVDRGVLALLERIVLKLKPQLAPIKVAVIPLVK..... 408
41 -17.9002e3c_A mol:protein length:291 Pyrrolysyl-tRNA synthetase  ali model follow..  15  65..........................................................................................................................................................................................................................IYAEERENYLGKLEREITRFF-VDRGFLEIKSPILIPLEYIERMG--------------------------------IDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPD-PIKIFEI-GPCYRKESDGKE---HLEEFTMLNFCQMGSGCTREN----LESIITDFLNHLGIDFKIVGDSCMVYGDTLDVM-----------------------HGDLELSSAVVGPIPLDREWGIDKP---------AGFGLERLLKVKHD........................... 264
42 -15.6004cs2_A mol:protein length:274 PYRROLYSINE--TRNA LIGASE  ali model follow..  14  6...............................................................................................................................................................................KSQTDRLEVLLNPKDEISLNSGKPFRELESE--LLSRRKKDL-IYAEERENYLGKLEREITR-FFVDRGFLEIKSPILIPLEYIERMG--------------------------------IDNDTELSKQIFRVDKNFCLRPMLAPNLANYLRKLDRALPD-PIKIFEI-GPCYRKESDGKE---HLEEFTMLNFCQMGSGCTREN----LESIITDFLNHLGIDFKIVGDS............................................................................................................. 194
43 -15.3003qtc_A mol:protein length:290 Pyrrolysyl-tRNA synthetase  ali model follow..  13  1................................................................................................................................................MKGGLVPRGSHGASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQ-------------IYAEERENYLGKLEREITR-FFVDRGFLEIKSPILIPLEYIERMG--------------------------------IDNDTELSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPD-PIKIFEI-GPCYRKESDGKE---HLEEFTMLVFWQMGSGCTREN----LESIITDFLNHLGIDFKIVGDSCMVFGDTLDVM-----------------------HGDLELSSALVGPIPLDREWGIDKP---------AGFGLERLLKVK............................. 259
44 -15.2004bw9_A mol:protein length:291 PYRROLYSINE--TRNA LIGASE  ali model follow..  15  13.......................................................................................................................................................................SHMASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDL-IYAEERENYLGKLEREITR-FFVDRGFLEIKSPILIPLEYIERMG--------------------DNDTELSKQIFRVDK-------------NFCLRPMLAPNLGNYLRKLDRALPD-PIKIFEI-GPCYRKESDGKE---HLEEFTMLNFCQMGSGCTREN----LESIITDFLNHLGIDFKIVGDS-----------------------CMVFGDTLDVMHGDLELSSAVVGPRPLDREWGIDKP---------AGFGLERLLKVKHDFKNIK...................... 269
45 -15.0002pme_A mol:protein length:693 Glycyl-tRNA synthetase  ali model follow..  12  4.....................................................................................................................................AGAEEVLAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQPKDDIVDRAKMEDTLKRRFFIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMV-LMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVYLRPETAQGIFLNFKR-EFNQGKLPFAAAQI-GNSFRNEISPRSGLIRVREFTMAEIHFVDPSEKDHPKFQNVADLHLYLYSA........................................................................................................................ 324
46 -13.4003l4g_A mol:protein length:508 Phenylalanyl-tRNA synthetase alpha chain  ali model follow..  11  2......ADGQVAELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGVIEAELRSTKHWELTAEGEEIAREGSHEARVFRSIPPEGLAQSELMRPSGKVGFSKAMSNKWIRVDKSAADGPRV----FRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKPYNFLAHPLLKVRSQFRQIFLE-----MGFTEMPTDNFIESSLFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGGYGSQGKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSI-DRVFRNET---LDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGTQLRFKPAYNPYTEP------------------SMEVFSYHQ---GLKKWVEVGNSGVFRPEMLLPMGL----PENVSVIAWGLSLERPTMIKIRELVGHKVNLQMVYDSPLCRLDAEPRP. 501
47 -12.40011as_A mol:protein length:330 ASPARAGINE SYNTHETASE  ali model follow..  10  9................................................................................................................................................................................................................................QRQISFVKSHFSRQLEERLGLIEVQAPILSRVG-------------------DGTQDNLSGAEK-----------AVQVKVKALPDAQFEVVHSL-----AKWKRQTLGQHDFS-GLYTHMKALRPDEDRLSP--LHSVYVDQWDWRVMGDGERQFSTLKSTVEAIWAGIKATEAAVSEEFGLAPFFVHSQELLSRYPDLDAKGRERAIAKDLGAEDAFELSSMGIRVDADTLKHQWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQGVWPAAVRESVPSL....... 329
48 -11.0005c51_B mol:protein length:485 DNA polymerase subunit gamma-2, mitochondrial  ali model follow..  5.....................................................................................................................................VAVRACHKVCRCLLSGFGGRVDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAPGSGEGSEA-LLEICQRRHFLSGSKQGCHPGFGPLGVELRKNLAAEWWTSVVFREQVFPVDALHHKPGPLLPGDSAFRLVSAETL----------------ILQDKELSKEQLVAFLENVLKTSGKLRENLLHGALEHYVNLDLVNKRLPYGLAQI-GVCFHPVFDTKNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSD-----------CQDEEGRKGNKLYYNFPWGKELIETLWNLGLLHMYPGNVSKLHGRDGRKNVV----VNGDLDRGMLAYLYD.......................... 352
49 -10.3002g4c_A mol:protein length:474 DNA polymerase gamma subunit 2  ali model follow..  6...................................................................................................................................................STMDAGQPELLTERSSPKGGHVKSHAELEGNGEH-----PEAPGSGEGSEALLEICQRRHFLSGSKQGCHPGFGPLGVELRKNLAAEWWTSVVFREQVFPVDALHHKPGPLLPGDSAFRLVSAETL--------------REILQDKELSKEQLVTFLENVLKTSGKLRENLLHGALEHYVNLDLVNKRLPYGLAQI-GVCFHPVFDTKQGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSD-----------CQDEEGRKGNKLYYNFPWGKELIETLWNLGLLHMYPGNVSKLHGRDGRKNVV----VNGDLDRGMLAYLYD.......................... 335
50 -10.3003p8t_A mol:protein length:294 AsnS-like asparaginyl-tRNA synthetase related protein  ali model follow..  11  15................................................................................................................................................................................................................................IDIQTKILDYMTKFFTDR-GFKWLLPIMLSPIT--------------------------------DPLWPDPAGEGIRPAEVDVYGVRMRLTHSMILHKQLAIAMGL--------KIFVL-SPNIRLESRRKDDGRHSYEFTQLDFIEGAKMKDVMRLIEELIYGLFRKAEEWTGREFPRAREEPFWIVNIPREFYDREENGVWKNYDLILPYGYGE----KIRAAGLKEDSFRPYLEIARAGKLKPSAG-AGIGVERLVRFIVGAKH-EVQPFPR................ 286
51 -10.1004rdx_A mol:protein length:423 Histidine--tRNA ligase  ali model follow..  12  1..............................................................................................................................................................................................................GPMTARAVRGTKDLFGKELRMHQRIVATARK-VLEAAGALELVTPIFEETQVFEKG----------------VGAATDIVRKEMFTFQDRGG------------RSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMA-GPMFRAERPQK----RYRQFHQVNYEALGSENPILDA--EAVVLLYECLKELGLRRLKVKLSSEVLSPHREALSEDSKERLELNPMRILDSKSERDQALLKELGVRPMLDFLGEEFEVHHEEIGAQSALGGGFGVERVALAL............................. 318
52 -10.1004lns_A mol:protein length:351 Asparagine synthetase a  ali model follow..  10  13................................................................................................................................................................................................................................QEQILTVKRSFSEALEKELNLVEVRAPILFRVGDGTQDNLSGF------------------------------EKAVQVPVKAIPNASFEVVHSLAKWKRRTLANYKFAPGH---GLYTH-MTALRVDDVLDN--IHSVVVDQWDWMVMKDDQRNLAFLKEVVCKVYAAIETIQFVHAEHLLLAYPNLTAKEREREIAREYGAVFLIGIGAVLSSGDSLEVSSMGIRVNAEALRHQWHQQLLNGEFPQTVGGGIGQSRMVMFMLRKKHIGCSVWPEEIRKK........... 347
53 -10.1001nnh_A mol:protein length:294 asparaginyl-tRNA synthetase-related peptide  ali model follow..  11  15................................................................................................................................................................................................................................LDIQTKILEYMTDFFVKE-GFKWLLPVIISPIT--------------------------------DPLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGL--------KIFVL-SPNIRLESRQKDDGRHAYEFTQLDFVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKEEPFWIINIPREFYDREVDGFWRNYDLILPYGYGE----KIRKAGLNEDSFRPYLEIAKAGKLKPSAG-AGIGVERLVRFIVGAKH-EVQPFPR................ 286
54 -9.7401b70_A mol:protein length:350 PHENYLALANYL-TRNA SYNTHETASE  ali model follow..  10  2....................................................................................................................................LEEALAAIQNARDLEELKALKARYLGKKGLLTQEMKGLSALPLEERRKRGQELNAIKAALEAALEAREKALEEAALKEALERERVDVSLPPITLMERELVEIFRAL-SEFFNFDALNIPEHHPARDMWDTFWLTG-----------------------------EGFRLEGPLGEEVEGRLLLRTHT-----SPMQVRYMVAHTPPFRIVVP-GRVFRFEQ----DATHEAVFHQLEGLVVGEG-----AMAHLKGAIYELAQALFGPDSKVRFQPVYF-------------VEPGAQFAVWWPEG---GKWLELGGAGMVHPKVFQAVDAYREAYRGVTGFAFGLGVERLAML-IRYFFGGRLKFLEQFKGVL.......... 350
55 -9.4904p71_C mol:protein length:338 Phenylalanine--tRNA ligase alpha subunit  ali model follow..  12  1....................................................................................................................................MENLDALVSQALEAVRHTEDVNALEQKKGELTQVMKTLGDLPAEERPKVGALINVAKEKVQDVLNARKTELEGAALAARLAAERIDVTLPPVTRTLERIEQCFSR-----IGYEVAEGPEV--------------------------EDDYHNFEAL---------IPGHHPARAMHDTFYFNANMLLRTHTSPVQVRTMESQQPPIRIVC-PGRVYRCDSDLTH------MFHQVEGLLVDEGVSFADLKGTIEEFLRAFFEK------LEVRFRPSFFPFTEPSAEVDIQCVICSGNGCRV----KQTGWLEVMGCGMVHPNVLRMSNI---DPEKFQGFAFGMGAERLAMLRLRLFFDNDLRFLGQFR............. 338
56 -9.4805c53_B mol:protein length:903 Pol gamma B  ali model follow..  282......................................................YPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAY-----LYDSFQLTENSFTRKKNLHRKVLKLHPCL------API---------KVALDVGRGPTLELRQVCQGLFNELLENWPGYLETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISSA-VMRSRVAVRACHKVCRCLLSGFGGRVDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAPGSGEGSE-GDSAFRLRENLLHGALEHYVNLDLVNKRLPYGLAQI-GVCFHPVFDTKQGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSD-----------CQDEEGRKGNKLYYNFPWGKELIETLWNGDHELLHMYPGNVSKLHGRDGRKNVVPCVNGDLDRGMLAYLFTRKKNLHRKVLKLHPCLAPIKVALDVG 806
57 -9.4601qe0_A mol:protein length:420 Histidine--tRNA ligase  ali model follow..  15  6......................................................................................................................................................................................................................RGTQDILPEDSKKWRYIENQLDE-LMTFYNYKEIRTPIFESTDLFARG----------------VGDSTDVVQKEMYTFKDKGD------------RSITLRPEGTAAVVRSYEHKMQGNPNQPIKLYYN-GPMFRYERKQK----RYRQFNQFGVEAIGAENPSVDA--EVLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEALVKHFEPVYYEQVKAYLDDLGIPYTEDPNLVRGDYYTHRYNLELLDGPSETGIGFALSIERLLLAL............................. 317
58 -9.4304ztu_B mol:protein length:472 DNA polymerase subunit gamma-2, mitochondrial  ali model follow..  2......................................................................................................................................................DAGQPELLTERSSPKGGHVKSHAELEGNGEH-----PEAPGSGEGSEALLEICQRRHFLSGSKQGCHPGFGPLGVELRKNLAAEWWTSV-------------VVFREQVFPVDALHHKPGPLLPGDSAFRLVSAETLREILQDKELSKEQLVAFLENVLKTSGKLRENLLHGALEHYVNLDLVNKRLPYGLAQI-GVCFHPVKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSD-----------CQDEEGRKGNKLYYNFPWGKELIETLWNLGLLHMYPGNVSKLHGRDGRKNVV----VNGDLDRGMLAYLFTRKKNLHRKVLKLHPCLAPIKVAL... 361
59 -9.3805e3i_A mol:protein length:438 Histidine--tRNA ligase  ali model follow..  12  10......................................................................................................................................................................................................................KGFNDVLPTQTAAWRRLEQHLAS-LMDAYGYQQIRLPIVEQTGLFKR--------------------------AIGDATDIVEKEMYTFFDKGNPPESLTLRPEGTAGCVRALVEHNLLRGA-TPRVWYM-GPMFRYEKPQK----RYRQFHQFGVETFGVATPDIDA--ELIMLTARLWKRMGVDHMVQLELNT--ILENAPKLHDFLKEDSLSHFQQLQDYLTAAGIKFVINQKLVRGDYYNKTFEWTTTALGSQGTVCAGMGMERLLLLL............................. 322
60 -9.1303net_A mol:protein length:465 Histidyl-tRNA synthetase  ali model follow..  16  1.......................................................................................................................................................................................................SNAMAKNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVY-ESYGFTPIETPAVERLEVLQAKG---NQGDNIIYGLEPILPPNRQAEKDK---------------GDTGSEARALKFDQTVPLAAYIARHLND--TFPFARYQM-DVVFRGERAKD----RFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAVNIGDFVIRINN............................................................................................................ 186
61 -9.0402rhq_A mol:protein length:294 Phenylalanyl-tRNA synthetase alpha chain  ali model follow..  11  1...........................................................................................................................................................................................................................MGSSSSGLVPRGSHMGTELMEKLNQQLAEETIDVTLPSRQISIGSIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQARTMEKR---NGQGPVKIICP-GKVYRRDS----DATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLFGA-----DREIRLRPSYFPFTEPSVEVDVSCFKCKGKGCNV----KHTGWIEILGAGMVHPNVLEMAGF---DSNEYSGFAFGMGPDRIAMLKYG........................... 262

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.