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Query: 2k50_A mol:protein length:115 Replication factor A related protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKPEHRMDTISKLEEGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENIKLLKKFREGDVIRIKDVNIRGGFGGRKEAHLMPRSTVEVLDPLELast
1 -55.4002k50_A mol:protein length:115 Replication factor A related protein  ali model  100  1MKPEHRMDTISKLEEGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENIKLLKKFREGDVIRIKDVNIRGGFGGRKEAHLMPRSTVEVLDPLE 109
2 -44.6003dm3_A mol:protein length:105 Replication factor A  ali model follow..  22  4.....DTYNIGELSPGMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTDI--DVGRGDYVRVRGYIREG-YYGGLECTANYVEILKKGEKIE 104
3 -41.1002k5v_A mol:protein length:104 Replication protein A  ali model follow..  19  3.......YKISELMPNLSGTINAEVVAAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELAD--FEVKKGDIAEVSG----KQGYSGLEISVDNIGIIEKSLE.. 98
4 -39.3003e0e_A mol:protein length:97 Replication protein A  ali model follow..  20  2......NYKISELMPNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELAD--FEVKKGDIAEVSG----KQGYSGLEISVDNIGIIEKS.... 96
5 -36.4002mna_A mol:protein length:117 Single-stranded DNA binding protein (SSB)  ali model follow..  21  3.......EKVGNLKPNMEVNVTVRVLEASEARQIQTKNG-VRTISEAIVGDETGRVKLTLWGKHAGS---IKEGQVVKIENAWTTA-FKGQVQLNAGSKTKIAEASEDG 100
6 -36.2001wjj_A mol:protein length:145 hypothetical protein F20O9.120  ali model follow..  15  11.KRKPVFVKVEQLKPGTTHTLTVKVIEANIVVPVTRRPSQPSRIVECLIGDETGCILFTARNDQVDL---MKPGATVILRNSRIDM-FKGTMRLGVDKWGRIEATGAAS 124
7 -36.1001o7i_A mol:protein length:119 SINGLE STRANDED DNA BINDING PROTEIN  ali model follow..  21  3.......EKVGNLKPNMEVNVTVRVLEASEARQIQTKNG-VRTISEAIVGDETGRVKLTLWGKHAGS---IKEGQVVKIENAWTTA-FKGQVQLNAGSKTKIAEASEDG 100
8 -33.4005d8e_A mol:protein length:115 SOSS complex subunit B1  ali model follow..  14  3.....TETFVKDIKPGLKLNLIFIVLETGRVTKT----KDGHEVRTCKVADKTGSINISVWDDVGNL---IQPGDIIRMTKGYASV-FKGCLTLYTGRGGDLQKIGEFC 99
9 -33.3002k75_A mol:protein length:106 uncharacterized protein Ta0387  ali model follow..  19  2.....DLVKIRDVSLSTPVSVIGKITGIHKKE--YESDGTTKSVYQGYIEDDTARIRISSFGKQ------LQDSDVVRIDNARVAQ-FNGYLSLSVGDSSRIESVNV.. 95
10 -31.8002kbn_A mol:protein length:109 Conserved protein  ali model follow..  15  2...EPQLTKIVDIVENGQANLKAKVIQLWENTH-------ESISQVGLLGDETGIIKFTIWKNAEL--PLLEQGESYLLRSVVVGE-YNDRFQVQVNKNSSIEKLSE.. 96
11 -28.0002oq0_A mol:protein length:206 Gamma-interferon-inducible protein Ifi-16  ali model follow..  17  2.....SHMQVTPRRNVQKRPVIVKVLSTTKPFEYETPEMEKKIMFHATVATQTQFFHVKVLNT--SLKEKFNGKKIIIISDYLEYDS-----LLEVNEESTVSEAGPNQ 99
12 -25.0004jbm_A mol:protein length:193 Interferon-inducible protein AIM2  ali model follow..  20  99.....RISKLKIQPCGTIVNGLFKV----------QKITEEKDRVLYGIHDKTGTMEVLVLGNPSKT--KCEEGDKIRLTFFEVSK-NGVKIQLKSGPCSFFKVIKAAK 189
13 -24.9004owt_B mol:protein length:211 SOSS complex subunit B1  ali model follow..  14  3.....TETFVKDIKPGLKLNLIFIVLETGRVTKT----KDGHEVRTCKVADKTGSINISVWDDVGNL---IQPGDIIRLTKGYASV-FKGCLTLYTGRGGDLQKIGE.. 97
14 -24.1003rn2_A mol:protein length:208 Interferon-inducible protein AIM2  ali model follow..  18  1.......GSVDSIREGQKRCLPVMVLKAKKPFTFETQEG-KQEMFHATVATEKEFFFVKVFNT--LLKDKFIPKRIIIIARYYRHSG-----FLEVNSASRVLDAESDQ 95
15 -23.9001jmc_A mol:protein length:246 PROTEIN (REPLICATION PROTEIN A (RPA))  ali model follow..  17  128.....GIDDLENKSKDSLVDIIGICKSYEDATKITVRNNREVAKRNIYLMDTSGVVTATLWGEDADKFDG-SRQPVLAIKGARVSD--FGGRSLSVLSSSTIIANPDIP 230
16 -22.0001ynx_A mol:protein length:114 Replication factor-A protein 1  ali model follow..  20  1...TRPIFAIEQLSPYQVWTIKARVSYKGEIKTWHNQRG-DGKLFNVNFLDTSGEIRATAFNDFATKFNELQEGKVYYVSKAKLQPALTHPYELNLDRDTVIEECFDES 113
17 -21.7004l5t_A mol:protein length:203 Interferon-activable protein 202  ali model follow..  19  105DERPIEHLKICDLHLQTEERLVDGEFKV-------YRKSSGNNCICYGIWDDTGAMKVVVSGQLTSV--NCEIGNTIRLVCFELTS-NADEWFLRATRYSYMEVIMPEK 203
18 -21.2001fgu_A mol:protein length:252 REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT  ali model follow..  17  124.....GIDDLENKSKDSLVDIIGICKSYEDATKITVRNNREVAKRNIYLMDTSGVVTATLWGEDADKFDG-SRQPVLAIKGARVSD--FGGRSLSVLSSSTIIANPDIP 226
19 -18.6004jbj_A mol:protein length:198 Interferon-activable protein 202  ali model follow..  19  109.KETLKISKIKELDSGTLIYGVFAVEKKK----------VNDKSITFKIKDNEDNIKVVWDKEQHNI--NYEKGDKLQLFSFHLRK-GNGKPILHSGNHSFIK...... 197
20 -17.9003kjo_A mol:protein length:299 Protection of telomeres protein 1  ali model follow..  16  6.ATNYIYTPLNQLKGGTIVNVYGVVKFFKPPY----LSKGTDYCSVVTIVDQTNVLTCLLFSGNYEALPIIKNGDIVRFHRLKIQV-YKKETQGITSSGFASLTFEGTL 110
21 -17.4004l5q_A mol:protein length:199 Interferon-activable protein 202  ali model follow..  18  105IRSAKETLKISKIKELDSGTLIYGVFAV-------EKKKVNDKSITFKIKDNEDNIKVVWDKEQHNI--NYEKGDKLQLFSFHLRK-GNGKPILHSGNHSFIKG..... 198
22 -17.3004lnq_A mol:protein length:197 Interferon-activable protein 202  ali model follow..  18  105.KETLKISKIKELDSGTLIYGVFAVEKKKVND----------KSITFKIKDNEDNIKVVWDKEQHNI--NYEKGDKLQLFSFHLRK-GNGKPILHSGNHSFIKGEK... 196
23 -17.3004gnx_C mol:protein length:444 Putative uncharacterized protein  ali model follow..  13  123.....RINELESVEANQQCDVIGILDSYGELSEIVSKSQRPVQKRELTLVDQGNSVKLTLWGKTAETFPT-DEKPVLAFKGVKVGD--FGGRSLSMFSSSTMLINPDIT 229
24 -16.9006d6v_D mol:protein length:701 Telomerase-associated protein 82  ali model follow..  354.QKGYNGQKNNKYRQNNNSEVLKTSKQYLSVLAVVDIQSSDKNIRLKICDNSCNELKVVIFPDLCYEWRDFSINKWYYFNEFVRQI-YNDEVQLKNNIHSSIKESDDQR 471
25 -16.1004hid_A mol:protein length:143 Protection of telomeres protein 1  ali model follow..  19  1..MSDSFSLLSQITPHQRCSFYAQVIKTW----------YSDKNFTLYVTDYTENIRCILWDEHDFYCNYIKEGDYVVMKNVRTKIDHLGYLECILHGDSSIEKVDSEE 127
26 -15.7001qzg_A mol:protein length:187 Protection of telomeres protein 1  ali model follow..  12  26.ELTFQSIRSSQEKKNTIVNLFGIVKDFTPSR--QSLHGTKDWVTTVYLWDPT-GLQIHLFSKQGNDLPVIQVGQPLLLHQITLRS-YRDRTQGLSKDQFRYALWPDFS 138
27 -14.5003nbh_B mol:protein length:147 RecQ-mediated genome instability protein 2  ali model follow..  11  56................AAVWMQGRVVMADR--------------GEARLRDPSGDFSVRGLERVPRGRPCLVPGKYVMVMGV---QACSPEPCLQAVKMTDLSDNPIHE 132
28 -14.2003mxn_B mol:protein length:150 RecQ-mediated genome instability protein 2  ali model follow..  10  59................AAVWMQGRVVMADRG--------------EARLRDPSGDFSVRGLERVPRGRPCLVPGKYVMVMG----QACSPEPCLQAVKMTDLSDNPIHE 135
29 -13.9001jb7_A mol:protein length:495 telomere-binding protein alpha subunit  ali model follow..  16  33.GHKYEYVELAKASLAQPQHFYAVVIDATFPY----KTNQERYICSLKIVDPTDYATLVLYAKRFEDLPIIRAGDIIRVHRATLRL-YNGQRQFNANVFYS........ 143
30 -11.4004gnx_B mol:protein length:136 Putative uncharacterized protein  ali model follow..  15  37................GQLTFVAVVRNIS----------RNATNVAYSVEDGTGQIEVRQWSDDSSKASEIRNNVYVRVLG----KSFQNRRSISSGHMRPVIDYNEV. 120
31 -11.4004joi_A mol:protein length:166 CST complex subunit STN1  ali model follow..  20  37................KQVDVLGTVIGVRERDAFYS----------YGVDDSTGVINCICWQETIEQKTKIEIGDTIRVRG----RTYREEREIHATTYYKVD...... 138
32 -10.8003f2b_A mol:protein length:1041 DNA-directed DNA polymerase III alpha chain  ali model follow..  12  1MRDEEPVRRLETIVEEERVVVQGYVFDAE-----VSELKSGRTLLTMKITDYTNSILVKMFKEDAELMSGVKKGMWVKVRGSVQNDTFVRDLVIIANDLNEIAANERQD 108
33 -10.6003kf8_A mol:protein length:220 Protein stn1  ali model follow..  84..............PVNQINIFGKIVYEQYKEKEFNGVEESYVI--LVISDFIGIDSKIRVRLSQEQFDKKNYGKIVELEGE---YNWYDSINVSKKPDRELKV..... 176
34 -10.6001nnx_A mol:protein length:109 Protein ygiW  ali model follow..  10  27.....TVESAKSLRDDTWVTLRGNIVERISDDLY-------------VFKDASGTINVDI-DHKRWNGVTVTPKDTVEIQG----DKDWNSVEIDVKQIRKVN...... 108
35 -10.6003kf6_A mol:protein length:159 Protein stn1  ali model follow..  11  48................RWIQIVGYIAAIDIYEGKHV----------LTVDDCSGMVLRVVFFSMSKRAISMSPGNVVCVFGK---NSFRSEVELIAQSFEELRDPNDE. 132
36 -10.5002pi2_A mol:protein length:270 Replication protein A 32 kDa subunit  ali model follow..  11  49.......CTISQLLS-SQVTIVGIIRHAEK----------APTNIVYKIDDMTAAPMDVRQDDTSSENTVVPPETYVKVAG----RSFQNKKSLVAFKIMPLEDMNEF. 155
37 -10.2004gla_C mol:protein length:109 OBody NL8  ali model follow..  19  13........EITPNLHGTEVVVAGWVASLGD----------YGRVKIVKVSDREGGAAVPV-DHLFKVFAELSREDVVVIKGVEASKGVGRGVEIFPSEIWILNKAK... 108
38 -9.7506bwy_A mol:protein length:361 Protection of telomeres protein 1, DNA dC->dU-editing enzyme APOBEC-3G fusion  ali model follow..  11  29.......SSQELQKKNTIVNLFGIVKDFTPSR--QSLHGTKDWVTTVYLWDPTIGLQIHLFSKQGNDLPVIQVGQPLLLHQITLRSYRDRTQGLSKDQFR......... 125
39 -9.5801x54_A mol:protein length:434 Asparaginyl-tRNA synthetase  ali model follow..  18  1MIEKVYCQEVKPELDGKKVRLAGWVYTNM----------RVGKKIFLWIRDSTGIVQAVV-EETFEKAKKLGRESSVIVEGIVKADRAPGGAEVHVEKLEVIQAVSE.. 103
40 -9.2903rln_A mol:protein length:200 Gamma-interferon-inducible protein 16  ali model follow..  14  80.....PFTLVADVNADRNMEIPAGLIASASVTPEVHKKNVRGEFTYYEIQDATGKMEVVVHGRLTTI--NCEEGDKLKLTCFELAPKSGNTGELRSVIHSHIKVIKTRK 199
41 -9.1903rlo_A mol:protein length:204 Gamma-interferon-inducible protein 16  ali model follow..  14  80.....PFTLVADVNADRNMEIPKGLIRSASVTPEVHKKNVRGEFTYYEIQDNTGKMEVVVHGRLTTI--NCEEGDKLKLTCFELAPKSGNTGELRSVIHSHIKVIKT.. 197
42 -9.1001b8a_A mol:protein length:438 PROTEIN (ASPARTYL-TRNA SYNTHETASE)  ali model follow..  19  1MYRTHYSSEITEELNGQKVKVAGWVWEVK----------DLGGIKFLWIRDRDGIVQITA-PELFKLIPKLRSEDVVAVEGVVNFTP-KLGFEILPEKIVVLNRAET.. 103

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhi D, Krishna SS, Cao H, Pevzner P, Godzik A. Representing and comparing protein structures as paths in three-dimensionalspace. BMC Bioinformatics. 2006 Oct 20;7:460.