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Query: 2pi2_A mol:protein length:270 Replication protein A 32 kDa subunit, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MWNSGFESYGSSSYGGAGGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSAGRAPISNPGMSEAGNFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDDDHFKSTDAELast
1 -106.0002pi2_A mol:protein length:270 Replication protein A 32 kDa subunit  ali model  100  1MWNSGFESYGSSSYGGAGGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSAGRAPISNPGMSEAGNFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDDDHFKSTDAE 270
2 -61.7004gnx_B mol:protein length:136 Putative uncharacterized protein  ali model follow..  30  2......................................KKAGNNTLRPVTIRQILNAEQPDAEFILDGAELGQLTFVAVVRNISRNATNVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSFQNRRSISSGHMRPVIDYNEVMFHRLEAVHAHLQVTR................................................................................................... 136
3 -51.4003kf6_A mol:protein length:159 Protein stn1  ali model follow..  18  1............................SLENENQLTHQFPTLSRWNPMFISDVHKISFQRYIGFWMGFPIRWIQIVGYIAAIDIYEGKHVLTVDDCSGMVLRVVFIIQDDFSSKRAISMSPGNVVCVFGKINSFRSEVELIAQSFEELRDPNDEWKAWQKRMRYKKNLTKISKNHHSIIRT........................................................................................ 159
4 -47.9004joi_A mol:protein length:166 CST complex subunit STN1  ali model follow..  17  2.......................................DPVFLAFAKLYIRDILDMKEVPGVFLYNGHPIKQVDVLGTVIGVRERDAFYSYGVDDSTGVINCICWKKLNTESVSAATKIEIGDTIRVRGSIRTYREEREIHATTYYKVDDWNIQIARMLELPTIYRKVYDQP................................................................................................. 163
5 -45.3003mxn_B mol:protein length:150 RecQ-mediated genome instability protein 2  ali model follow..  16  1.................GSHMAAA----ADSFSGGPAGVRLPRSPPLKVLAEQLRRDAEGGPAAGRGPLDLAAVWMQGRVVMADRGE----ARLRDPSGDFSVRGL----ERVPRGRPCLVPGKYVMVMGVVQACSPEPCLQAVKMTDLSDPIHESMWELEVEDLHRNIP.................................................................................................... 150
6 -44.9003nbh_B mol:protein length:147 RecQ-mediated genome instability protein 2  ali model follow..  16  1.................GPLGSD-------SFSGGPAGVRLPRSPPLKVLAEQLRRDAEGGPAAGRGPLDLAAVWMQGRVVMADRGE----ARLRDPSGDFSVRGL----ERVPRGRPCLVPGKYVMVMGVVQACSPEPCLQAVKMTDLSDPIHESMWELEVEDLHRNIP.................................................................................................... 147
7 -36.1003kf8_A mol:protein length:220 Protein stn1  ali model follow..  11  47...........................................DKTIPLFISDINNSPNLRHVVLVNNYPVNQINIFGKIVYEQVEESYVILVISDFIGIDSKIRVRLSQEQFKETLDKKNYGKIVELEGEIYNWYDSINVSKKPDRELDGLHFEFEQWKKRMEFRKNNLVEP................................................................................................. 210
8 -34.2001z1d_A mol:protein length:103 Replication protein A 32 kDa subunit  ali model follow..  100  7.............................................................................................................................................................................SQPSAGRAPISNPGMSEAGNFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDDDHFKSTDAE 103
9 -29.0004ou0_A mol:protein length:73 Replication protein A 32 kDa subunit  ali model follow..  97  3.......................................................................................................................................................................................................GSANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDDDHFKSTDAE 73
10 -20.6001nnx_A mol:protein length:109 Protein ygiW  ali model follow..  16  1.......................EQGGFSGPSATQSQAGGFQGPNGSVTTVESAKSLRDD-----------TWVTLRGNIVERISDDL---YVFKDASGTINV-----DIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKVN........................................................................................................................ 108
11 -19.5006d6v_E mol:protein length:269 Telomerase holoenzyme Teb2 subunit  ali model follow..  14  7.................GGFDNNSGN----NQSAQKQQAEKIPQITVPLNINQIVKAAKENPQAHSGNHAFENAIITAKFEFLQSDSPKIMGKLSDSTGCIEVVIQKSKMSDELPEFVQANRHKYVRAMLKMRK---NAQIQLLYFSIVNDANEISRHGLDLCLRYLQRKHGIEDFMHMTNDKAHNNHNASAQKVHYQIDRNQQPKEQVLELMRQILKHNPNDQIPKSKIIE-QSQLNQVQINQILQQLVSANEIFSVGSDNYLLNV... 269
12 -13.7002k5v_A mol:protein length:104 Replication protein A  ali model follow..  15  1..............................................MNYKISELMPNL--------------SGTINAEVVAAYPKKE-KSLFLKDDTGSIRGTLWNELADFE------VKKGDIAEVSGYVKQGYSGLEISVDNIGIIEKSLE.................................................................................................................... 98
13 -13.5003stb_C mol:protein length:148 RNA-editing complex protein MP42  ali model follow..  11  3.............................SAMGTQYVHGQETILPQAPQYHLDVAPNAPEEGEVAAHWRCVNHCVMLGVVQNIQFEDKVLQFTLDPDKDFHTVRVF--DSDYSSRVKEQLRDGEWFLVTGRLR------------MVPQYDGSMRKYYHYPVIQV......................................................................................................... 138
14 -13.4004owt_B mol:protein length:211 SOSS complex subunit B1  ali model follow..  13  5................................................TFVKDIKP-------------GLKNLNLIFIVLETGRVTKTRTCKVADKTGSINISVW-------DDVGNLIQPGDIIRLTGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQ............................................................... 150
15 -13.1002kbn_A mol:protein length:109 Conserved protein  ali model follow..  6................................................TKIVDIVENG-------------QWANLKAKVIQLWENTHEQVGLLGDETGIIKFTIWKNAELPL------LEQGESYLLRSVVGEYNDRFQVQVNKNSSIEKLSE.................................................................................................................... 96
16 -13.1003e0e_A mol:protein length:97 Replication protein A  ali model follow..  15  3................................................YKISELMPNL--------------SGTINAEVVTAYTKGQLKSLFLKDDTGSIRGTLWNELADFE------VKKGDIAEVSGYVKQGYSGLEISVDNIGIIEK....................................................................................................................... 95
17 -12.9004jbj_A mol:protein length:198 Interferon-activable protein 202  ali model follow..  15  112................................................LKISKIKELDSG-----------TLIYGVFAVEKKKVNDKSITFKIKDNEDNIKVVWDKEQHNIN------YEKGDKLQLFSHLRKGNGKPILHSGNHSFIK........................................................................................................................ 197
18 -12.6003dm3_A mol:protein length:105 Replication factor A  ali model follow..  16  6................................................YNIGELSPGM--------------TATFEGEVISALPIGKLKSFIVRDETGSIRVTLWDNLTDID------VGRGDYVRVRGIREGYYGGLECTANYVEILKKGEKI................................................................................................................... 103
19 -12.4004gla_C mol:protein length:109 OBody NL8  ali model follow..  10  21.......................................................................TEVVVAGWVASLGDYGRVKIVKVSDREGGAAVPVYLEAGKTPDKVFAELSREDVVVIKGIVEA-GRGVEIFPSEIWILNKAK..................................................................................................................... 108
20 -12.3004jbm_A mol:protein length:193 Interferon-inducible protein AIM2  ali model follow..  11  99.................................................RISKLKIQPCG-----------TIVNGLFKVQKITEEKDRVLYGIHDKTGTMEVLVLGNPSKTK------CEEGDKIRLTFEVSKNGVKIQLKSGPCSFFKVIKA.................................................................................................................... 187
21 -12.3001o7i_A mol:protein length:119 SINGLE STRANDED DNA BINDING PROTEIN  ali model follow..  12  1..............................................MEEKVGNLKPNM-------------ESVNVTVRVLEASEVRTISEAIVGDETGRVKLTLW-------GKHAGSIKEGQVVKIEAWTTAFKGQVQLNAGSKTKIAEASE.................................................................................................................... 98
22 -12.3004gn5_A mol:protein length:113 OBody AM3L15  ali model follow..  12  19.......................................................................SEVVVAGWVAHLGDYGRVKIVKVSDREGGAAVPVYLERGKTPDKVFAELSREDVVVIKGIVEAGWPVAEIFPSEIWILNKAKPLPID................................................................................................................ 113
23 -12.2005d8e_A mol:protein length:115 SOSS complex subunit B1  ali model follow..  10  5................................................TFVKDIKPGL-------------KNLNLIFIVLETKDGHEVRTCKVADKTGSINISVW-------DDVGNLIQPGDIIRMTGYASVFKGCLTLYTGRGGDLQKIGE.................................................................................................................... 97
24 -12.0004l5t_A mol:protein length:203 Interferon-activable protein 202  ali model follow..  19  112................................................LKICDLHLQTEE-----------RLVDGEFKVYRKSSGNNCICYGIWDDTGAMKVVVSGQLTSVN------CEIGNTIRLVCELTSNADEWFLRATRYSYME........................................................................................................................ 197
25 -12.0002mna_A mol:protein length:117 Single-stranded DNA binding protein (SSB)  ali model follow..  12  1..............................................MEEKVGNLKPNM-------------ESVNVTVRVLEASEVRTISEAIVGDETGRVKLTLW-------GKHAGSIKEGQVVKIEAWTTAFKGQVQLNAGSKTKIAEASE.................................................................................................................... 98
26 -12.0004glv_B mol:protein length:107 OBody AM3L09  ali model follow..  13  19.......................................................................SEVVVAGWVAHLGDYGRVKIVKVSDREGGAAVPVYLERGKTPDKVFAELSREDVVVIKGIVEATTVTREIFPSEIWILNK....................................................................................................................... 106
27 -11.9003f1z_A mol:protein length:133 putative nucleic acid-binding lipoprotein  ali model follow..  1......................GASKAFYSAGDKLFQPGDDAVASMQTYSVAQFLQPFTLNPAKASSDYLGKWVKVRGVIVDIRRKSGIFIVTMRDEQNKTDKRLTFNFGSHNSADVEALSNGSVATIVGQVHQVQDSTIPTLQNPKVVK........................................................................................................................ 133
28 -11.9005gro_A mol:protein length:115 Aspartate--tRNA(Asp/Asn) ligase  ali model follow..  12  21.......................................................................KIVKVAGWCNTYRDHGGVVFIDLRDKSGLVQLVC--DPSSKAYEKALEVRSEFVLVAKGKVRL-TGKIEIVLEELIIENK....................................................................................................................... 108
29 -11.8002k75_A mol:protein length:106 uncharacterized protein Ta0387  ali model follow..  17  4................................................VKIRDVSLST-------------PYVSVIGKITGIHKKEYEYQGYIEDDTARIRISSFGKQ----------LQDSDVVRIDARVAQFNGYLSLSVGDSSRIESVNV.................................................................................................................... 95
30 -11.7004lnq_A mol:protein length:197 Interferon-activable protein 202  ali model follow..  16  108................................................LKISKIKELDSG-----------TLIYGVFAVEKKKVNDKSITFKIKDNEDNIKVVWD------KEQHNINYEKGDKLQLFSHLRKGNGKPILHSGNHSFIK........................................................................................................................ 193
31 -11.7004gn4_B mol:protein length:108 OBody AM2EP06  ali model follow..  13  20.......................................................................SEVVVAGWVAHLGDYGRVKIVKVSDREGGAAVPVYLERGKTPDKVFAELSREDVVVIKGIVEASEQYGEIFPSEIWILNK....................................................................................................................... 107
32 -11.7003rn2_A mol:protein length:208 Interferon-inducible protein AIM2  ali model follow..  14  112.................................................KINTLQTQPLG-----------TIVNGLFVVQKVTEKKKNILFDLSDNTGKMEVLGV------RNEDTMKCKEGDKVRLTFTLSKNGEKLQLTSGVHSTIK........................................................................................................................ 196
33 -11.6004l5q_A mol:protein length:199 Interferon-activable protein 202  ali model follow..  15  113.................................................KISKIKELDSG-----------TLIYGVFAVEKKKVNDKSITFKIKDNEDNIKVVWDKEQHNIN------YEKGDKLQLFSHLRKGNGKPILHSGNHSFIK........................................................................................................................ 197
34 -11.5001wjj_A mol:protein length:145 hypothetical protein F20O9.120  ali model follow..  12  1................................GSSGSSGSTVKRKPVFVKVEQLKPGT-------------TGHTLTVKVIEANQPSRIVECLIGDETGCILFTAR-------NDQVDLMKPGATVILRSRIDMFKGTMRLGVDKWGRIEATGA.................................................................................................................... 122
35 -11.5004joi_D mol:protein length:122 CST complex subunit TEN1  ali model follow..  11  1.............................................MLPYLPWEVSAGQVPDG---------STLRTFGRLCLYDMIQSRVTLMAQHGSDQHQVLV-----CTKLVEPFHAQVGSLYIVLGELQHQQDRGVVKARVLTCVEGMNLPLLE--QAIREQRLYKQERGGSQ............................................................................................. 122
36 -11.2004gn3_B mol:protein length:113 OBody AM1L10  ali model follow..  23.......................................................................TEVVVAGWVASLGDYGRVKIVKVSDREGGAAVSVYLEYGKTPDKVFAELSREDVVVIKGIVEASKAAADMHN----------EIFPSEIWIL........................................................................................................... 109
37 -11.2001x54_A mol:protein length:434 Asparaginyl-tRNA synthetase  ali model follow..  2.............................................IEKVYCQEVKPELDGK-----------KVRLAGWVYTNMRVGKKIFLWIRDSTGIVQAVVAKNVVGEETEKAKKLGRESSVIVEGIVERAPGGAEVHVEKLEVIQAVSEFPIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLKYFLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSREFWHLELE 230
38 -10.5003m4p_A mol:protein length:456 Asparaginyl-tRNA synthetase, putative  ali model follow..  10  7......................................TEATTTPVETPIVCNIRDAAGLEG---------KLVTFKGWAYHIRKARKTLIFELRDGSGYCQCVI-FGKELCEPEKVKLLTRECSLEITGRLNAYAGKNEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKLQAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSREYLHLEAE 251
39 -10.5001wyd_A mol:protein length:429 hypothetical aspartyl-tRNA synthetase  ali model follow..  12  6.................................................FIADVTPEYDGKE-----------VIWAGWVHLLRDLGGKKFIILRDKTGLGQVVV--DKNSSAFGISQELTQESVIQVRGIVKA-PRGIELHAEEITLLSKAKALDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFT-----KIIASATEGGAQLFPVLAQSPQLYKELMAGVVERVFEVAPAWRAEESDEFISMDVE 229
40 -10.5002k50_A mol:protein length:115 Replication factor A related protein  ali model follow..  11  8................................................DTISKLEE---------------AETPVTGRVMKISSEGKLANVIIADDTGELRAVFW----TENIKLLKKFREGDVIRIKD--GGFGGRKEAHLMPRSTVEVLDPL................................................................................................................... 108
41 -10.4005xix_A mol:protein length:472 Asparagine--tRNA ligase, cytoplasmic  ali model follow..  12  2...............................GSSSSGLVPRGSHMAKKITIKNDPSLPEPKCV-ALEGYRGQRVKVFGWVHRLRRQGKNLMFVLRDGTGYLQCVL--ADELCQCYNGVLLSTESSVAVYGMLNLTPKGKQ-------------APGGHELSCDFWELIGLAPAGGADNLINEESDVDVQLNNRHMMIRGENMSKILKARSMVTRCFRDHFFDRG-GEEAFLTQSSQLYLETCLPALGDVFCIAQSYRAEQSREYTHVEAE 259
42 -10.2004dk3_C mol:protein length:105 RNA-editing complex protein MP81  ali model follow..  19  1....................................................................RAGSNALMIGRIADVQHAMTVTQYVLASGEKEFIVIRCMGDNFPASLLKDQVKLGSRVLVQGTLR------------MNRHVDDVSKRLHAYPFIQV......................................................................................................... 94
43 -10.2001n9w_A mol:protein length:422 aspartyl-tRNA synthetase 2  ali model follow..  1..............................................MRVLVRDLKAHVG------------QEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVT---------GGLKLPLPESALRVRGLVAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHEYLSLDVE 220
44 -10.1003k81_C mol:protein length:164 MP18 RNA editing complex protein  ali model follow..  12  1.................................................MLALTSRRLLLQQTFMRCCKSVNSVTLVGVVHDIQSGFVYTQFTLVVEKDHHTIRCFGELFSAEVKQK--VKEGNVVCVNGRLR------------LSPQLEPSCNKHFYFPYIQV......................................................................................................... 120
45 -10.1002xti_A mol:protein length:437 ASPARAGINYL-TRNA SYNTHETASE, CYTOPLASMIC, PUTATIVE  ali model follow..  10  3................................................VKIRDLVKHRN------------ERVCIKGWIHRMRRQGKSLMFILRDGTGFLQVLL--MDKLCQTYDALTVNTECTVEIYGAIKEVPEGKE-------------APNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAG-GEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSREYAHVEAE 229
46 -10.1002oq0_A mol:protein length:206 Gamma-interferon-inducible protein Ifi-16  ali model follow..  14  125.......................................................................SGNIVYGVFMLHKVNQKTTIYEIQDDRGKMDVVGT------GQCHNIPCEEGDKLQLFCRLRKKNQMSKLISSFIQIKKKTN..................................................................................................................... 206
47 -9.8705w25_A mol:protein length:616 Aspartate--tRNA(Asp/Asn) ligase  ali model follow..  13  4.........................................SSSGLVPRGSHVFVLRSHAAGLLREGDAG-QQVTLAGWVARRRDHGGVIFIDLRDASGIAQVVFRDPQDTEVLAQAHRLRAEFCVSVAGVVEI-TGEIEVNATSLTVLGECAPLPFQLDEPAGEELRLKYRYLDLRRDDPAAAIRLRSRVNAAARAVLARHDFVEIETPTITRSTPEGARDFLVPARLHPGSFYALPQSP-QLFKQLLMVAGRYYQIADEDEFTQLDME 253
48 -9.6502fna_A mol:protein length:357 Conserved hypothetical protein  ali model follow..  127.................................................LLESFEQASKDNVIIVLDEAQLRGVNLLPALAYAYDNLKRIKFIM---SGSEMGLLYDYLRVEDPESPLFGRAFSTVEL---LRRGFQEADIDFKDYEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFEN----LHGREIARKRYLNIMRTLSKCGKWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIK--EGEKYCPSE.. 349
49 -9.6101asy_A mol:protein length:490 ASPARTYL-tRNA SYNTHETASE  ali model follow..  11  27................................................VKFVDLDEAKDSDK----------EVLFRARVHNTRQQGATLAFTLRQQASLIQGLVKANKEGTISKNAGSLNLESIVLVRGIVKKVDQNLEIHITKIYTISETPE------ALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNEFTGLDME 277
50 -9.1501b8a_A mol:protein length:438 PROTEIN (ASPARTYL-TRNA SYNTHETASE)  ali model follow..  10  6.................................................YSSEITEELNGQK-----------VKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELKLIPKLRSEDVVAVEGVVNFTPKAKL-------------EILPEKIVVLNR----AETPLPLDPTGKVKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNEAWSIDSE 233

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhao Y, Hong DH, Pawlyk B, Yue G, Adamian M, Grynberg M, Godzik A., Li T. The retinitis pigmentosa GTPase regulator (RPGR)- interacting protein: subserving RPGR function and participating in disk morphogenesis. Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):3965-70. Epub 2003 Mar 21.