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Query: 3j7y_7 mol:protein length:338 mL39, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEALAMGSRALRLWLVAPGGGIKWRFIATSSASQLSPTELTEMRNDLFNKEKARQLSLTPRTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMHLSEWYCRKSILALVDGQPWDMYKPLTKSCEIKFLTFKDCDPGEVNKAYWRSCAMMMGCVIERAFKDEYMVNLVRAPEVPVISGAFCYDVVLDSKLDEWMPTKENLRSFTKDAHALIYKDLPFETLEVEAKVALEIFQHSKYKVDFIEEKASQNPERIVKLHRIGDFIDVSEGPLIPRTSICFQYEVSAVHNLQPTQPSLIRRFQGVSLPVHLRAHFTIWDKLLERSRKMVTEDQSKATEECTSTLast
1 -144.0003j7y_7 mol:protein length:338 mL39  ali model  100  1MEALAMGSRALRLWLVAPGGGIKWRFIATSSASQLSPTELTEMRNDLFNKEKARQLSLTPRTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMHLSEWYCRKSILALVDGQPWDMYKPLTKSCEIKFLTFKDCDPGEVNKAYWRSCAMMMGCVIERAFKDEYMVNLVRAPEVPVISGAFCYDVVLDSKLDEWMPTKENLRSFTKDAHALIYKDLPFETLEVEAKVALEIFQHSKYKVDFIEEKASQNPERIVKLHRIGDFIDVSEGPLIPRTSICFQYEVSAVHNLQPTQPSLIRRFQGVSLPVHLRAHFTIWDKLLERSRKMVTEDQSKATEECTST 338
2 -126.0004v1a_c mol:protein length:334 MITORIBOSOMAL PROTEIN ML39, MRPL39  ali model follow..  87  1...MAMGAWGLRLWRAVPRGEAGWRLIATSPASQLSPTELIEMQNDLFNKEKNRQLSLTPRTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMHLSEWYCRKSILALVDGQPWDMYKPLTKSCEIKFLTFKDDDPGEVNKAYWRSCAMMMGCVIERAFKDEYVVSLVRAPEVPVIAGAFCYDVVLDKRLDEWMPTKENLHSFTKDARALIYKDLPFETLEVEAKVALEIFQHNKYKLDFIEEKASQNPERIVKLHRFGDFIDVSEGPLIPRTSICFQYEVSA-VHNLQTQSSLVRRFQGLSLPVHLRAHFTIWNKLLERSRKMVTEDKTKPTEESAST 334
3 -51.4001qf6_A mol:protein length:642 THREONYL-TRNA SYNTHETASE  ali model follow..  18  1....................................................................MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKDEEG---LEIIRHSCAHLLGHAIKQLWPH------TKMAIGPVIDNGFYYDVDLDR-----TLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANESYKVSILDENAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWADKLNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEAP 261
4 -51.3001nyq_A mol:protein length:645 threonyl-tRNA synthetase 1  ali model follow..  17  1..................................................................MEQINIQFPDGNKKAFDKGTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIVTPGSEEA---LEVLRHSTAHLMAHAIKRLYGN------VKFGVGPVIEGGFYYDFDIDQNI-----SSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKLKAHLQMLEERKERDHRKIGKELELFTNSQLVG 260
5 -35.1001wwt_A mol:protein length:88 Threonyl-tRNA synthetase, cytoplasmic  ali model follow..  20  4............................................................GSSGDSKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELLKFEDEEA---QAVYSGPSS............................................................................................................................................................................................... 87
6 -20.7001v7o_A mol:protein length:165 alanyl-tRNA synthetase  ali model follow..  13  9...............................................................................................................................................HSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFD---------RKPSDEEIREIERLANEKVKENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVR-----ILKVVVIEDWVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFELLEL..................................... 153
7 -20.5003rfn_A mol:protein length:159 BB_1wnu_001  ali model follow..  11  8...............................................................................................................................................HSALHVVKGAVVKAAGSAAKWTTSTYVKGNKGVLIV---------KAALELDKWAWAAMEALANEKVKENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRI-----LKVVVIEDWVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFELL....................................... 150
8 -20.1003rhu_A mol:protein length:160 SC_1wnu  ali model follow..  11  9...............................................................................................................................................HSALHVVKGAVVKTAGSDAKWTTSTYVKG---------NKGVLIVKAALEPDKWGIAAIEALANEKVKENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRI-----LKVVVIEDWVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFELL....................................... 151
9 -12.2003hvz_A mol:protein length:78 Uncharacterized protein  ali model follow..  21  13..........................................................................PKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVDGRIVPIDYKVKTGEIIDVLTTKELE............................................................................................................................................................................................................ 72
10 -12.1002kmm_A mol:protein length:73 Guanosine-3`,5`-bis(Diphosphate) 3`-pyrophosphohydrolase  ali model follow..  16  8..........................................................................PKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVLSSKSLE............................................................................................................................................................................................................ 67
11 -11.9003kew_A mol:protein length:241 DHHA1 domain protein  ali model follow..  11  1...............................................MSLTKLYYEDQYIKEFKGEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLIDGIKVLDVYEEEGKVYHVLEKEPKKKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANTC--------------GFHLGKEISTVDIVGFLDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKV------------RRALPKTDEEIRIVEIVGLLNACCGVHPRNTRDLQVIKIRRW-----EKHKNATRIEYVA..................................... 227
12 -9.8103ugq_A mol:protein length:460 Threonyl-tRNA synthetase, mitochondrial  ali model follow..  12  1.............................................................................................................................................................................................................................................................................................MGSSSSGLVPRGSHMASATKNA-----SSATPATMTSMVSQRQDLFMTDPLSP 48
13 -9.2603wqy_A mol:protein length:906 Alanine--tRNA ligase  ali model follow..  12  475...............................................DIYAELAKRHSKAEKVQEKKITLQNEYPATEKLYYDDPTLLEFEAEVIGVELNRSAFYPESGGQDNDVGYLIANGGKFEVVDVLEADGVVLHVV--HSATHVLLYSLQKVLGNHVWQAGAR-----KEFSKARLDVT-----HFRRPSEEEIKEIEMLANREILANKPIKWEWMDRIEAERKFGFRLYQ-------GGVPPGRKIRVVQVGDDVQACGGTHCRSTGEIGMLKILKVESIQDG----VIRFEFAAGEAAIEAVEEMERLLREASSILRVEPAKL........ 765

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.