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Query: 3l4g_A mol:protein length:508 Phenylalanyl-tRNA synthetase alpha chain, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MADGQVAELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEGEEIAREGSHEARVFRSIPPEGLAQSELMRLPSGKVGFSKAMSNKWIRVDKSAADGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKPYNFLAHGVLPDSGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYDSPLCRLDAEPRPPPTQEAALast
1 -167.0003l4g_A mol:protein length:508 Phenylalanyl-tRNA synthetase alpha chain  ali model  100  1MADGQVAELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEGEEIAREGSHEARVFRSIPPEGLAQSELMRLPSGKVGFSKAMSNKWIRVDKSAADGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKPYNFLAHGVLPDSGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYDSPLCRLDAEPRPPPTQEAA 508
2 -106.0001b70_A mol:protein length:350 PHENYLALANYL-TRNA SYNTHETASE  ali model follow..  24  1............................................................................................................................MLEEALAAIQNARDLEELKALKARYLGKKGLLTQEMKGLSALPLEERRKRGQELNAIKAALEAALEAREKALEEAALKEALERERVDVSLPGASLFSGGLHPITLMERELVEIFRALGYQAV-EGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGE------------------------GFRLEGPLGEEVEGRLLLRTHTSPMQVRYMVA-----HTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFGPDSRFQPVYFPFVEPGAQFAVWWPEGGKWLELGGAGMVHPKVFQAVDAYREVTGFAFGLGVERLAMLRYGIPDIRYFFGGRLKFLEQFKGVL................ 350
3 -103.0003pco_A mol:protein length:327 Phenylalanyl-tRNA synthetase, alpha subunit  ali model follow..  23  2.......................................................................................................................SHLAELVASAKAAISQASDVAALDNVRVEYLGKKGHLTLQMTTLRELPPEERPAAGAVINEAKEQVQQALNARKAELESAALNARLAAETIDVSLPGRRIENGGLHPVTRTIDRIESFFGELGFTVA-TGPEIEDDYHNFDALNIPGHHPARADHDTFWFDTTRLLRTQTSGVQIRTMKAQQ---------------------------------------------PPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFEEQIRFRPSYFPFTEPSAEVDVMGKNGK-WLEVLGCGMVHPNVLRNVGIPEVYSGFAFGMGMERLTMLRYGVTDLRSFFENDLRFLKQFK................... 327
4 -100.0004p71_C mol:protein length:338 Phenylalanine--tRNA ligase alpha subunit  ali model follow..  21  2.......................................................................................................................ENLDALVSQALEAVRHTEDVNALEQIRVHYLGKKGELTQVMKTLGDLPAEERPKVGALINVAKEKVQDVLNARKTELEGAALAARLAAERIDVTLPGRGQLSGGLHPVTRTLERIEQCFSRIGYEVA-EGPEVEDDYHNFEALNIPGHHPARAMHDTFYFNANMLLRTHTSPVQVRTMESQQ--------------------------------------------PPIRIVCPGRVYRCDS-DLTHSPMFHQVEGLLVDEGVSFADLKGTIEEFLRAFFEKEVRFRPSFFPFTEPSAEVDIQVCKQTGWLEVMGCGMVHPNVLRMSNIPEKFQGFAFGMGAERLAMLRYGVNDLRLFFDNDLRFLGQFR................... 338
5 -94.2002rhq_A mol:protein length:294 Phenylalanyl-tRNA synthetase alpha chain  ali model follow..  26  3...................................................................................................................................................................................SSSSGLVPRGSHMGTELMEKLNQQ-LAEETIDVTLPSRQISIGSKHPLTRTVEEIEDLFLGLGYEIV-DGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQARTMEKRNG------------------------------------------QGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLFGAEIRLRPSYFPFTEPSVEVDVSCCKHTGWIEILGAGMVHPNVLEMAGFDNEYSGFAFGMGPDRIAMLKYGIEDIRYFYTNDVRFLEQFK................... 281
6 -73.5005x6c_A mol:protein length:553 O-phosphoserine--tRNA(Cys) ligase  ali model follow..  19  21.................................................................................................................KVLELAEKDFETAWRETRALIKDKHIDNKYPRLKPVYGKPHPVMETIERLRQAYLRMGFEEMI--NPVIVDEMEIYKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKVEIIKNLGIDIDEEKKERLREVLHLY-KKGAIDGDFEIAKALNVSNEMGLKVLETAFPE--------------------------------FKDLKPESTTLTLRSHMTSGWFITLSSLI-KKRKLPLKLFSIDRCFRREQEDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQFGFTKFKFKEKKSKYYTPETQTEVYHPKLGEWIEVATFGVYSPIALAKYNI--DVPVMNLGLGVERLAMIIYGYEDVRAMVYPQFYEYRLSDRDIAGMIRVDKVPILDEF. 384
7 -71.6002du3_A mol:protein length:534 O-phosphoseryl-tRNA synthetase  ali model follow..  21  2...................................................................................................................................................................................KFDPQKYRELAEKDFEAAWKAGKEILAERSPNELYPRVGFSFGKEHPLFATIQRLREAYLSIGFSEVVNKQFGREALAVLDRCFYKREVDSKPLQEIFHRYKKGEIDGDDLSYLIDVDDITAVKILDEVFPEFKELKPISSTLTLRSHMTTGWFITLSHIA-DKLPLPIKLFSIDRCFRREGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQFGFERFRKDEKRSKYYIPDTQTEVFTKYSDGWIEIATFGIYSPTALAEYDI--PYPVMNLGLGVERLAMILYGYDDVRKMVYPQIHGEIKLSLDIAREIKVKEVPQTAVG. 377
8 -65.2003cmq_A mol:protein length:415 Phenylalanyl-tRNA synthetase, mitochondrial  ali model follow..  16  8......................................................................................................................................................................................QRAPGSVVELLGKSYPQDDHSNL--TRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDLLHAGLDA-FLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHELF------AGIKDGESLQLFEQSSRSAHKQETHTMEAVKLV----EFDLKQTLTRLMAHLFGDEIRWVDCYFPFTHPSFEMEINF--HGEWLEVLGCGVMEQQLVNSAGAQDRI-GWAFGLGLERLAMILYDIPDIRLFWCEDERFLKQFCNQKVKFQPLSKYPAVIN.. 329
9 -58.1004tqd_A mol:protein length:291 Pyrrolysine--tRNA ligase  ali model follow..  16  2.......................................................................................................................................................................................................GSSSSGLVPRGSHMASAPALTKSQTDRLEVLLNPKDEISLNSGFREL-ESELLSRRKKDLQQIYAEERENEREITRFFVDRGFLEIKSPILIPLEYIERMGID----NDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRA-LPDPIKIFEIGPCYRKESDGKEHLEEFTMLSFIQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMVYGDTLDVM-------HGDLELSSAVVGPIPLDREWGIDKP--WIGAGFGLERLLKVKHDFKNIKRAARSES-YYNGISTNL................ 285
10 -54.3004q6g_A mol:protein length:267 Pyrrolysine--tRNA ligase  ali model follow..  17  1..................................................................................................................................................................................PALTKSQTDRLEVLPKDEISLNSGKPFRELESELLSRRKKYAEERENYLGKLEREITRFFVDRGFLEI-KSPILIPL-EYIERMGIDNDTELSKQIFRV-----------------------------------------DKNFCLRPMVAPNIFNYARKLD-RALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFFQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCSVYGDTLDVMH-------GDLELSSAVVGPIPLDREWGIDKP--WIGAGFGLERLLKVKHDFKNIKRAARSESYY........................ 260
11 -51.4005k1p_A mol:protein length:274 Pyrrolysine--tRNA ligase  ali model follow..  17  7.....................................................................................................................................................................................SQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKYAEERENYLGKLEREITRFFVDRGFLEI-KSPILIPL---IERMGIDNDTELSKQIFRV-----------------------------------------DKNFCLRPMLAPNLYNYLRKLDRA-LPDPIKIFEIGPCYRKESDGKEHLEEFTMLAFAQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMVYGDTLDVMH-------GDLELSSAVVGPIPLDREWGIDKPW--IGAGFGLERLLKVKHDFKNIKRAARSESYY........................ 261
12 -49.4002e3c_A mol:protein length:291 Pyrrolysyl-tRNA synthetase  ali model follow..  16  2.......................................................................................................................................................................................................GSSSSGLVPRGSHMASAPALTKSQTDRLEVLLNPKDEISLNSGFREL-ESELLSRRKKDLQQIYAEERENYLEITRFFVDRGFLEIKSPILIPLEYIERMGID----NDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPD-PIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMVYGDT-------LDVMHGDLELSSAVVGPIPLDREWGIDKPW--IGAGFGLERLLKVKHDFKNIKRAARSGSYY........................ 278
13 -33.2004cs2_A mol:protein length:274 PYRROLYSINE--TRNA LIGASE  ali model follow..  17  1.................................................................................................................................................................................MPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKEERENYLGKLEREITRFFVDRGFLEIKS--------------------PILIPLEYI-----------------------ERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLANYLRKLDRALPD-PIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMVFGDTLDVM-------HGDLELSSAVVGPIPLDREWGIDKPW--IGAGFGLERLLKVKHDFKNIKRA-ARSESYYNGISTNL................ 268
14 -32.1004bw9_A mol:protein length:291 PYRROLYSINE--TRNA LIGASE  ali model follow..  17  30......................................................................................................................................................................................EVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKS--------------------PILIPLEYI-----------------------ERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLGNYLRKLDRALPD-PIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMVFGDTLDVM-------HGDLELSSAVVGPRPLDREWGIDKP--WIGAGFGLERLLKVKHDFKNIKRAARSES-YYNGISTNL................ 285
15 -32.0003qtc_A mol:protein length:290 Pyrrolysyl-tRNA synthetase  ali model follow..  17  1...............................................................................................................................................................MKGGLVPRGSHGASAPALTKSQTDRLEVLLN--PKDEISLNSGKPFRELESELLSRRKKYAEERENYLGKLEREITRFFVDRGFLEIKS--------------------PILIPLEYI-----------------------ERMGIDNDTELSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPD-PIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMVFGDTLDVM-------HGDLELSSALVGPIPLDREWGIDKPW--IGAGFGLERLLKVKHDFKNIKRA-ARSESYYNGISTNL................ 282
16 -21.6002zni_A mol:protein length:308 Pyrrolysyl-tRNA synthetase  ali model follow..  15  12.........................................................................................................................................................GSHMFLTRRDPPLSSFWTKVQYQRLKELNASGEQLEMGFSDALSRDRAFQGIEHQLMSQGKRHLEQTVKHRPALLELEEKLAKALHQQGFVQVVT--PTIITKSALAKMTIGEDHPLFSQVFWL-----------------------------------------DGKKCLRPMLAP-NLYTLWRELERLWDKPIRIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEHQRLEDMARWVLEAAGIREFELVTESSVVYGDTVDV------MKGDLELASGAMGPHFLDEKWEIFDP--WVGLGFGLERLLMIREGTQHVQSM............................... 287
17 -15.3003w3s_A mol:protein length:527 Type-2 serine--tRNA ligase  ali model follow..  12  1MELKFSAEVELTLSREVDPAEIEPTVEEFVKEANEDLLQRGVPTGKEGAKIESYYVLYDTIYMEITGTRYLRPHEAAMRVRKRLAER---------GRKHRVGVRDLKIPRYEVVLRFDREVTYDYVGYVPVADDVVVEDGTVRLTFQDVDEEMLRRHVIDRVIRLVAWAVEERSELVERVTKVEPGTVVDESGPRRIRFR-GDVTEEARRRGWVKEFPGRG-TPPMAALFEVLRDFLLER------------TRKLGFEPALFPKLIPLETMFRMRYLHG-CPPKRDPELFDDFKRELYVWGELNERTLGSLKEKLRDPGYVLAPAQCEPFYELLRDEVVDPERLPIKLYDCGWTYRWEG-GLERVNEFQRIEHVWIAEPEEAYRIRRELLEATKRVAEEEWKVVVSDDPFDVPSYEFEVYLPFKGERISVGSFNVHGEHFVDGFNVKEKSGRTLFGLGVTRWVLAQHGFYPIL-------ERIDEKFGGLPEVPKTLTWPE..... 527
18 -14.4003l4g_B mol:protein length:589 Phenylalanyl-tRNA synthetase beta chain  ali model follow..  12  225.................DSNGVVLSMPPIINGDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMVRADLINKKVGIRETP----------------ENLAKLLTRMYLKSEVIGDGNQIE-------------------EIPPTRADIIHAC-DIVEDAAIAYGYNNIQMTLPKTYTI------ANQFPLNKLTELLRHDMAAAGFTEA-----------------------------TFALCSQEDIADKLGVDISATKAVHIS------------NPKTAEFQVARTTLLPGLLKTIAA--NRKMPLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDKGGYVIKASEGPAFFPGRCAEIFARGQ----SVGKLGVLHPDVITKFELTMPC--SSLEINIGPFL........................................... 589
19 -13.8004h2w_A mol:protein length:346 Amino acid--[acyl-carrier-protein] ligase 1  ali model follow..  1...........................................................................................................................................................MGSSSSGLVPRGSHMNIAVLPNSPDTAPQIADPLDHLADK------------LFHSMGSDGVYARTALYESIVERLAALITSHREAGTEALR----------------FPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSPADLVL--SPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDTFRVDYASDPFQQLKFELLIPLRSEEQPTACMSFNYHREHFGTTWGIQDANGEPAHAFGMDRLAVAMFH-AKVRDILGLQPHVAAGAHGEGWR.............. 340
20 -13.6003mey_A mol:protein length:346 Bll0957 protein  ali model follow..  1...........................................................................................................................................................MGSSSSGLVPRGSHMNIAVLPNSPDTAPQIADPLDHLADK------------LFHSMGSDGVYARTALYESIVERLAALITSHREAGTEALR----------------FPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSPADLVL--SPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDTFRVDYASDPFQQLKFELLIPLRSEEQPTACMSFNYHREHFGTTWGIQDANGEPAHAFGMDRLAVAMFH-AKVRDILGLQPHVAAGAHGEGWR.............. 340
21 -13.5002cim_A mol:protein length:522 SERYL-TRNA SYNTHETASE  ali model follow..  11  7.GLVPRGSHMKLQFNLKAYFKTSADPTPAKDAIAALFEEANSTLLTRG-APEGQGAKVTEWKLGEDRIELTLQSGRYVRVHDAIFRLRKQLAEALG-KKYKIGIRGIEVESFIIKVPADHELRMLIKSMENIEGGIQLELEVGEAEMKNRVPDRILTLLEEKIEAAQYGAKAEHWNLLWQREPMEHPFKEDPTQAMMKEGWLKRGSSRGQWIHGP----------QSARIFRTFEKIVLELGYREMIFPKLVTWE------VWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIK-----EKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRGTSHRYESHGIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIF-NDILDIEWRKARVTPTTDYEACLPPDGEWLEFQNVSINGDKYPKGFNVGDELWSGCSGVGLERWAAVF-----LAQKGLDPANWPEEFRNRVGEMPKGIRF....... 515
22 -12.9002qvo_A mol:protein length:95 Uncharacterized protein AF_1382  ali model follow..  19  8LLFKEKALEILMTISLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQ................................................................................................................................................................................................................................................................................................................................................................................................................................................... 83
23 -12.9003p8t_A mol:protein length:294 AsnS-like asparaginyl-tRNA synthetase related protein  ali model follow..  12  19...................................................................................................................................................................................................................................TKILDYMTKFFTDRGFKWLLPIMLSPIT----DPLWPDPAGEGIRPAEVDVYGVRMRLTHSMILHKQLAIAMGLE----------------------------------------------KIFVLSPNIRLEKDDGRHSYEFTQLDFEIE---AKMKDVMRLIEELIYGLFRK-VNIPREFYDREENGVWKNYDLILPYGYGEVSSGGE---AKIRAAGLKEDSFRPGAGIGVERLVRFIVGAKHIAEV............................... 281
24 -12.6004j15_A mol:protein length:521 Aspartate--tRNA ligase, cytoplasmic  ali model follow..  13  20...................................................ASRKSQEKPREIMDAAEDYAKERYGISSMIQSQEKPDRVLVRVRDLTIQKADSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKE-SIVDVEGVVRKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAVRPEAEGEEEGRATVNQDTRLDNRVIDLRTS-SGICHLFRETLINKGFVEIQT-----------PKIISAASEGGANVFTVSYFKNNAYLAQSPQLYKQMCICADFE----------------------------------------------KVFSIGPVFRAEDSNTRHLTEFVGLD-IEMAFNYHYHEVMEEIADTMVQIFKGPLAVRPFYTMPDPRNPKQSNSYDMFMRGEEILSGAQLLTERALHHGIDLE----GGGIGLERVTMLFLGLHNVRQ--------TSMFPRDPKRLTP........... 515
25 -12.6001asy_A mol:protein length:490 ASPARTYL-tRNA SYNTHETASE  ali model follow..  11  24............................................QKRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQA----------------------------AGVCELFREYLATKKFTEVHT-----------PKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFE----------------------------------------------RVYEIGPVFRAENSNTHHMTEFTGLD-MEMAFEEHYHEVLDTLSELFVFIFSEPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQLLQERMKAHGLSPEDPGLGGGIGLERVVMFYLDLKNIRRA............................... 478
26 -12.4001nnh_A mol:protein length:294 asparaginyl-tRNA synthetase-related peptide  ali model follow..  12  19...................................................................................................................................................................................................................................TKILEYMTDFFVKEGFKWLLPVIISPIT----DPLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLK----------------------------------------------KIFVLSPNIRLEKDDGRHAYEFTQLDFEVE---AKMEDIMRLIERLVYGLFRK-INIPREFYDREVDGFWRNYDLILPYGYGEVASGGE---AKIRKAGLNEDSFRPGAGIGVERLVRFIVGAKHIAEV............................... 281
27 -12.3003i7f_A mol:protein length:548 Aspartyl-tRNA synthetase  ali model follow..  11  45..............KTGLKYTEIEELVPAMAEKTVTIRARVQAVRGKGNMVKGIYTCQALVMKSETISKEFVQFCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFP-SSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQ--------------SACCGLFREFLTSQKFVEIHT-----------PKLIGCSSEGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFR----------------------------------------------KVFEVGPVFRAENSNTRHLTEFEGLDEIVENYHECIDVMEKLFTFIFDEIPKRPAAIRPFYTMPDIDDPNYSNSYDVFVRGQEITSGAQFLMKRCIEKGVDPA----GCGIGLERITMLYLGIPNIRK--------VTLFPRDPIRLNP........... 548
28 -12.2002lnb_A mol:protein length:80 Z-DNA-binding protein 1  ali model follow..  18  9GREGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKV---SLTSPATWCLGGTDPE....................................................................................................................................................................................................................................................................................................................................................................................................................................................... 74
29 -11.8002obp_A mol:protein length:96 Putative DNA-binding protein  ali model follow..  18  13.GIDPAIVEVLLVLRNGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLAVSVEADGRGHASLTQEGAALAAQLFPD............................................................................................................................................................................................................................................................................................................................................................................................................................................... 94
30 -11.8003ig2_A mol:protein length:213 Phenylalanyl-tRNA synthetase beta chain  ali model follow..  11  1.............................................................................................................................................................................................................................SNADKSNKLQNLVAEQLVGCGFNEILNNSLTRAAYYD-----------SYPSKNLVMLLNP-----------------------------------SADLNCMRQTLLFGGLESI-AHNANRKNADLKFFEFGNCYHFDAEKKNPEKEDYHLGLWVTGENTSVYELKAYVENIFKRLGLDLHSLVGNLSDDIYSTALTVNTKGGK----RLATFGVVTKKMLKAFDVDNEV--YYADLNWKELM........................................... 213
31 -11.8003ica_A mol:protein length:213 Phenylalanyl-tRNA synthetase beta chain  ali model follow..  11  1.............................................................................................................................................................................................................................SNADRRYKWQTVVSEQLVGAGFNEILNNSLTAGSY--YEGLKSHPREMAVELMNPL----------------------------------------SQELNCMRQTLLFGGLETL-SHNLRRKHLSLYLFEWGKCYRFHAAKRTDETEDDRLGIWICGEPTSVFELKAVVEQVLCRVGIETGAYLKTADNDLYASAMEVKTRSGK----LLGTFGTVSTELIKRFEIEQPV--YFAELLWDALM........................................... 213
32 -11.3003g1z_A mol:protein length:326 Putative lysyl-tRNA synthetase  ali model follow..  14  21...................................................................................................................................................................................................................................AAIMAEIRRFFADRGVLEV----------------------------ETPCMSQATVTDIHLFPFETRFVGPGHS---------------QGINLYLMTSPEYHMKRLLAA----------PVFQLCRSFRNEEMGRHHNPEFTMLEWYRPHYDMYMNEVDDLLQQVLDCQPAESLSYQQAFFP-QASLAQISTEDHRVAERFEVYYKGIIDQNLLDALGLPD-----GVALGVDRLVMLALGAESLADV............................... 318
33 -11.1002d1h_A mol:protein length:109 109aa long hypothetical transcriptional regulator  ali model follow..  20  17YKITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGKK................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 75
34 -11.1004hw0_A mol:protein length:104 DNA-binding protein Sso10a-2  ali model follow..  14  1MQLERRKRGMFDILRNCEPKCGITRVIYGAGINYVVAQKYLDQLVKVGALNIKTENDRKIYEITEKGKLLRTHIEEFIKIRENLYSAKEKVSELLRTDS......................................................................................................................................................................................................................................................................................................................................................................................................................... 103
35 -11.0004asn_A mol:protein length:101 TUBR  ali model follow..  12  11.KLTIEDVSILGWLFQNEKAIKKSSIADELEYSTANFRKTLNKLEAIHFIGTVTGGKEHKLYLTEYGQQAVQQAIHHGEENEEVEE...................................................................................................................................................................................................................................................................................................................................................................................................................................... 100
36 -10.9003a5y_A mol:protein length:345 Putative lysyl-tRNA synthetase  ali model follow..  13  34...................................................................................................................................................................................................................................AAIMAEIRRFFADRGVLEV----------------------------ETPCMSQATVTDIHLVPFETRFVGPGHS---------------QGMNLWLMTSPEYHMKRLLVA----------PVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYMNEVDDLLQQVLDCPAAESLSYQQAFFP-QASLAQISTEDHRVAERFEVYYKGIIDQNLIEALGMPD-----GVALGVDRLVMLALGAETLAEV............................... 331
37 -10.9003fm5_A mol:protein length:150 Transcriptional regulator  ali model follow..  23  35TGLRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTSDRRNKLIAATEEGRRLRDDAKAHGRYFEGIPDTVVNQ................................................................................................................................................................................................................................................................................................................................................................................................................................. 133
38 -10.9001b8a_A mol:protein length:438 PROTEIN (ASPARTYL-TRNA SYNTHETASE)  ali model follow..  13  22.............................................................................................................AGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLNNRFMDLRRPEVMAIFKISSVFKAVRDFFHENGFIEIHT-----------PKIIATATEGGTELFPMKYFEEDAFLAESPQLYKEIMMASGLD----------------------------------------------RVYEIAPIFRAEEHNTTHLNEAWSIDAFIEDEEEVMSFLERLVAHAINYVREHPSEAKPFYIMKYDNKPEICRAFDLEYRGVEISSGGQILVEQIKEKGLNPESFEFGFGLGAERLIKQMLDLPNIREV............................... 426
39 -10.8002frh_A mol:protein length:127 Staphylococcal accessory regulator A  ali model follow..  12  33FSISFEEFAVLTYIENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERILVNAQQRKKIESLLSR............................................................................................................................................................................................................................................................................................................................................................................................................................................... 113
40 -10.7003g3z_A mol:protein length:145 Transcriptional regulator, MarR family  ali model follow..  16  27QDLNYNLFAVLYTLATEGS-RTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQQDRRKRLLSLTETGKAYAAPLTESDKVFATFGDKRTTR................................................................................................................................................................................................................................................................................................................................................................................................................................. 124
41 -10.7001oyi_A mol:protein length:82 double-stranded RNA-binding protein  ali model follow..  21  10IDERSNAEIVCEAIKTIGIEATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPR-WFMTTEADEADAD................................................................................................................................................................................................................................................................................................................................................................................................................................................... 82
42 -10.6002heo_A mol:protein length:67 Z-DNA binding protein 1  ali model follow..  10  6STGDNLEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSP..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 60
43 -10.5002fa5_A mol:protein length:162 transcriptional regulator marR/emrR family  ali model follow..  17  45YGMAIPEWRVITILALYPG-SSASEVSDRTAMDKVAVSRAVARLLERGFIRREDDRRRSMLALSPAGRQVYETVAPEQRLMSVFSAEEQQT................................................................................................................................................................................................................................................................................................................................................................................................................................. 142
44 -10.5003b73_A mol:protein length:111 PhiH1 repressor-like protein  ali model follow..  14  11..MTIWDDRILEIIHEEGN-GSPKELEDRDEIRISKVSRRLKKLADHDLL---QPLANGVYVITEEGEAYLNG................................................................................................................................................................................................................................................................................................................................................................................................................................................... 79
45 -10.4004zzl_A mol:protein length:158 MULTIDRUG RESISTANCE OPERON REPRESSOR  ali model follow..  15  46LDLTPPDVHVLKLIDEQRG-LNLQDLGRQMCRDKALITRKIRELEGRNLVRRESDQRSFQLFLTDEGLAIHQHAEAHDELFAPLTPVEQAT................................................................................................................................................................................................................................................................................................................................................................................................................................. 143
46 -10.3002nnn_A mol:protein length:140 Probable transcriptional regulator  ali model follow..  13  35.GLTPTQWAALVRLGETGP-CPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSDDGRRLLVSLSPAGRAELEAGLANRQALAPLSLQEQET................................................................................................................................................................................................................................................................................................................................................................................................................................. 131
47 -10.3002hgc_A mol:protein length:102 YjcQ protein  ali model follow..  18  1MNKDKLRYAILKEIFEGNTPLSENDI----GVTEDQFDDAVNFLKREGYIIGVHYSDDLGPELTEKGENYLKENGTWSKAYKTIKE...................................................................................................................................................................................................................................................................................................................................................................................................................................... 88
48 -10.3004rdx_A mol:protein length:423 Histidine--tRNA ligase  ali model follow..  16  25.....................................................................................................................................................................................................................................IVATARKVLEAAGALELVT--------------------PIFEETQVFEKGVGAATDIVRKEM-------------------FTFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQYEALGSENPILDAEAVVLLYECLKELGLRRLKVK-GLDYYVRTAFEVHHE--EIGAQSALGGGGRYD-GLSELLG-GPRVPGVGFAFGVERVALAL........................................ 318
49 -10.2001wyd_A mol:protein length:429 hypothetical aspartyl-tRNA synthetase  ali model follow..  13  33............................................................................................................GKKFIILRDKTGLGQVVVDKNSSAFGISQELTQESVIQVRGIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQ--------------SLALKAFRETLYKEGFIEIFT-----------PKIIASATEGGAQLFPVIYFGKEAFLAQSPQLYKELMAGVVE-----------------------------------------------RVFEVAPAWRAEESDTPHLAEFISMDVEMA---ADYNDVMQLLEKILHNIVKTPSDARPFYTKSKSENPELSESFDLIYKFLEIVSGSTVLEEALKKKGLKPESFEFGFGMGLARLMVMLTGIQSVKEI............................... 417
50 -10.2001j75_A mol:protein length:67 Tumor Stroma and Activated Macrophage Protein DLM-1  ali model follow..  12  6STGDNLEQKILQVLSDDGGPVKIGQLVKKCQVPKKTLNQVLYRLKKEDRVSSPEP..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 60
51 -10.2003cdh_A mol:protein length:155 Transcriptional regulator, MarR family  ali model follow..  18  39QGLRVPEWRVLACLVDNDA-MMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVKDKRRVRVRLTDDGRALAESLVAETRLLSALADTDAARIKGV............................................................................................................................................................................................................................................................................................................................................................................................................................. 140
52 -10.1003ech_A mol:protein length:142 Multidrug resistance operon repressor  ali model follow..  15  33LDLTPPDVHVLKLIDEQRG-LNLQDLGRQMCRDKALITRKIRELEGRNLVRRESDQRSFQLFLTDEGLAIHLHAELHDELFAPLTPVEQAT................................................................................................................................................................................................................................................................................................................................................................................................................................. 130
53 -10.0001qe0_A mol:protein length:420 Histidine--tRNA ligase  ali model follow..  14  22.....................................................................................................................................................................................................................................IENQLDELMTFYNYKEIRT--------------------PIFESTDLFARGVGDSTDVVQKEM-------------------YTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNPIKLYYNGPMFRYERKQKGRYRQFNQVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLKLV-GLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLD-GPSETGIGFALSIERLLLAL........................................ 317
54 -9.9902qww_A mol:protein length:154 Transcriptional regulator, MarR family  ali model follow..  15  37LGLTIQQLAMINVIYSTPG-ISVADLTKRLIITGSSAAANVDGLISLGLVVKLNDSMDLTLKLSKKGEDLSKRSTANAFMYKAMMK...................................................................................................................................................................................................................................................................................................................................................................................................................................... 126
55 -9.9904fx0_A mol:protein length:148 PROBABLE TRANSCRIPTIONAL REPRESSOR PROTEIN  ali model follow..  23  29SGLTNTQFSTLAVISLSEGSLTMSELAARIGVERTTLTRNLEVMRRDGLV-AGADARCKRIELTAKGRAALQKAVP................................................................................................................................................................................................................................................................................................................................................................................................................................................ 110
56 -9.9803nrv_A mol:protein length:148 Putative transcriptional regulator (MarR/EmrR family)  ali model follow..  19  36FGIGMTEWRIISVLSSASD-CSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNEDKRTYAINLTEMGQELYEVASDEKQLLEEFEEAEKDQ................................................................................................................................................................................................................................................................................................................................................................................................................................. 133
57 -9.9605xix_A mol:protein length:472 Asparagine--tRNA ligase, cytoplasmic  ali model follow..  10  60...........................................................................................................KNLMFLVLRDGTGYLQCVLADELCQCYNGVLLSTESSVAVYGMLNLTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDV--DVQLNNRHMMIRGENMSKILKAR----------SMVTRCFRDHFFDRGYYEVTP-----------PTLVQTQVEGGATLFKLDYFGEEAFLTQSSQLYLETCLPALG-----------------------------------------------DVFCIAQSYRAEQSRTRHLAEYTHVEAECP---LTFDDLLNRLEDLVCDVVDR-CRFPVEIKSFYMQRCPEDSRLTESVDVLEIVGGSMEILAGYKREGIDPTPYYWGYGLGLERFLTWILNRYHIRDV............................... 454
58 -9.9301x54_A mol:protein length:434 Asparaginyl-tRNA synthetase  ali model follow..  10  22.............................................................................................................AGWVYTNMRVGKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADERAPGGAEVHVEKLEVIQAVSEFPIPENPEQASPELLLDYRHLHIRTPKASA------ETLIMAAREWLLKDGWHEVFP-----------PILVTGAVEGGATLFKLKYFDKYAYLSQSAQLYLEAAIFGLE-----------------------------------------------KVWSLTPSFRAEKSRTRHLTEFWHLELEAA---MDLWDIMKVEEELVSYMVQR-YGYPKHIKAFNDPRKVLASDMLAPEGYGEIIGGSQREDDYILEEGMDPKDYEWGFGLGVERLVAWVLKLDHIRWA............................... 422
59 -9.9104fht_A mol:protein length:157 PcaV transcriptional regulator  ali model follow..  17  34EETTSPQYAVLNALVAEPG-LDQRTVGERVGLDRSTIAEVVSRLGRRGLLDKVQDGRRSLLRLTDEGLRVHRRLGVNQVFLAPLAADEQAV................................................................................................................................................................................................................................................................................................................................................................................................................................. 131
60 -9.9101n9w_A mol:protein length:422 aspartyl-tRNA synthetase 2  ali model follow..  11  19.............................................................................................................LGFLHWRRDLGRIQLLRDRSGVVQVVTGGLKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQ----------AALVRGFRRYLDRQDFTEIFT-----------PKVVRAGAEGGSGLFGVDYFEKRAYLAQSPQLYKQIMVGVFE-----------------------------------------------RVYEVAPVWRMEHHTSRHLNEYLSLDGFIADEEDLMRLEEALLAEMLEEALNTPRSVRPFYTYPEEDGTTRSFDLLFRGL--EITSGGQELLESLKAKGMDPEAFHGGFAIGAERLTQKLLGLPNVRYA............................... 410
61 -9.8903m4p_A mol:protein length:456 Asparaginyl-tRNA synthetase, putative  ali model follow..  13  36.............................................................................................................KGWAYHIRRKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIRKYYHDNHFTEIQP-----------PTIVKTQCEGGSTLFKLQYFNEPAYLTQSSQLYLESVIASLG-----------------------------------------------KSFCMLSSYRAEQSRTVHLAEYLHLEAELP---ISFEDLLNHLEDLVCTVIDNPSKMKAFYMSKVPGHPDVDLLMPGVG---EIVGGSMELMGAYKANGLNPDPYYWGYGLGVERLVMWLLGEDHIRKV............................... 444
62 -9.8904lns_A mol:protein length:351 Asparagine synthetase a  ali model follow..  13  12..............................................................................................................................................................................................................................LQEQILTVKRSFSEALEKLNLVEVRAPILFRVGDGTQDNLS--GFEKAVQVPVKAIPNASFEVVHSLAKWKRRTLANYKFAPGH------------------------------------------GLYTHMTALRVDVLDNIHSVVVDQWEMVMKDDQRNLAFLKEVVCKVYAAI--PNLTAKEREREIARENGDILLYNPTLDDSLEVSSMGILRHQISLTGDDSLLKSEWGGGIGQSRMVMFMLRKKHIGEVQCS------VWPEEIRKKHNL.......... 350
63 -9.8505e1w_A mol:protein length:180 Transcriptional regulator, MarR family  ali model follow..  14  47LNLSTEKFAILHELMCLGGESTPHTLARRIVFEPHSVSAIVSRMEKDGLIIKTDKKHMVRIKLSEKAIDTFYQALEYKQMMASITREEKVELSKT............................................................................................................................................................................................................................................................................................................................................................................................................................. 149
64 -9.8401sfu_A mol:protein length:75 34L protein  ali model follow..  10  11AEIFSLVKKEVLSLNTNDY-TTAISLSNRLKINKKKINQQLYKLQKED-TVKMVPSNPPKWFKNYN.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 74
65 -9.8102xti_A mol:protein length:437 ASPARAGINYL-TRNA SYNTHETASE, CYTOPLASMIC, PUTATIVE  ali model follow..  11  30...........................................................................................................KSLMFFILRDGTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASV--DKMLDNRHLVIRGENAAALLRLR----------AAATRAMREHFYNAGYVEVAP-----------PTLVQTQVEGGSTLFNLDYFGEQSFLTQSSQLYLETCIPTLG-----------------------------------------------DVFCIAQSYRAESRTRRHLAEYAHVEAECP---ITLDDLMEKIEELVCDTVDRRMEYKDAIFPYMQRDAKVDLLMPGVG---EIVGGSMELSKAFKNVEIDPKPYYWGYGLGLERFICWLTNTNHIRDV............................... 425
66 -9.8005hsm_A mol:protein length:160 Uncharacterized HTH-type transcriptional regulator Rv2887  ali model follow..  26  46LGLTLPEFVCLRMLSQSPG-LSSAELARHASVTPQAMNTVLRKLEDAGAVARPSSGRSLPATLTARGRALAKRAEADARVLARLTAPQQRE................................................................................................................................................................................................................................................................................................................................................................................................................................. 143
67 -9.7704aih_A mol:protein length:151 TRANSCRIPTIONAL REGULATOR SLYA  ali model follow..  19  27LELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHNDRRAKRIKLTEQSSPIIEQ................................................................................................................................................................................................................................................................................................................................................................................................................................................... 102
68 -9.7201lnw_A mol:protein length:147 Multidrug resistance operon repressor  ali model follow..  15  33LDLTPPDVHVLKLIDEQRG-LNLQDLGRQMCRDKALITRKIRELEGRNLVRRESDQRSFQLFLTDEGLAIHQHAEAHDELFAPLTPVEQAT................................................................................................................................................................................................................................................................................................................................................................................................................................. 130
69 -9.7003cta_A mol:protein length:230 Riboflavin kinase  ali model follow..  13  3LETDDQYYRAIKKIKSNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTEFADLS............................................................................................................................................................................................................................................................................................................................................................................................................................................. 86
70 -9.6801tbx_A mol:protein length:99 Hypothetical 11.0 kDa protein  ali model follow..  23  4TPFFYPEAIVLAYLYDNEG-IATYDLYKKVNMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAIS................................................................................................................................................................................................................................................................................................................................................................................................................................................... 79
71 -9.6601on1_A mol:protein length:142 Transcriptional regulator mntR  ali model follow..  14  1MTTPSMEDYIIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYL---IYEKYRGLVLTSKGKKIGKRLVYRHELLEQF........................................................................................................................................................................................................................................................................................................................................................................................................................................ 83
72 -9.63011as_A mol:protein length:330 ASPARAGINE SYNTHETASE  ali model follow..  11  8..............................................................................................................................................................................................................................KQRQISFVKSHFSRQLEELGLIEVQAPILSRVGDGTQDNLSGAEK--AVQVKVKALPDAQFEVVHSLAKWKRQTLGQHDFSAG-------------------------------------------GLYTHMKALRPDRLSPLHSVYVDQWERVMGDGERQFSTLKSTVEAIWAGIKATEAAVS-DYDDWSTPNGDILVWNPVLEDAFELSSMGILKHQLALTGDEDRLELEWGGGIGQSRLTMLLLQLPHIGQVQA-------------------GVWPAAVR.. 323
73 -9.6203boq_A mol:protein length:160 Transcriptional regulator, MarR family  ali model follow..  20  44.GLSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKADDRRSFSAKLTDAGLTTFKQASEAAELLRAVSDQDMVEASAA............................................................................................................................................................................................................................................................................................................................................................................................................................. 145
74 -9.5903vb2_A mol:protein length:144 Multiple antibiotic resistance protein marR  ali model follow..  14  36LDITAAQFKVLSSIRSAAS-ITPVELKKVLSVDLGALTRMLDRLVSKGWVERLNDKRGVLVKLTTGGAAISEQSHQHQELTKNLTADEVATLEYL............................................................................................................................................................................................................................................................................................................................................................................................................................. 138
75 -9.5302hr3_A mol:protein length:147 Probable transcriptional regulator  ali model follow..  16  32.PVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHQDGRRTRVSLSSEGRRNLYG................................................................................................................................................................................................................................................................................................................................................................................................................................................... 106

FFAS is supported by the NIH grant R01-GM087218-01
1 2 7 7 0 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Osterman A, Overbeek R, Godzik A. Automatic detection of subsystem/pathway variants in genome analysis. Bioinformatics. 2005 Jun 1;21 Suppl 1:i478-i486.