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Query: 3l4g_B mol:protein length:589 Phenylalanyl-tRNA synthetase beta chain, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDVVLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINIGPFLLast
1 -168.0003l4g_B mol:protein length:589 Phenylalanyl-tRNA synthetase beta chain  ali model  100  1MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDVVLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINIGPFL 589
2 -95.4003pco_B mol:protein length:795 Phenylalanyl-tRNA synthetase, beta chain  ali model follow..  17  102..DFKIKAAKLRGSEGMLCSFSELG-----ISDDHSGIIELPAD-APIGTDIREYLKLDDNTIEISVTPNRADCLGIIGVARDVAVLNQLPLVQPEIVPVGATIDDTLPITVEAPEACPRYLGRVVKGINVKA---PTPLWMKEKLRRCGIRSDAVVDVTNYVLLELGQPMHAFDKDRGGIVVRMAKEGETLVLLDGTEAKLNADT---------------LVIADHNKALAMGGIFGGEHSGVNDETQNVLLECAFFSPLSITGRARRLHTDASHRYERGVDPALQHKAMERATRLLIDLPKRATITLRRSKLDRLIGHHIADEQVTDILRRLGCEVT--EGKDEWQAVAPSWRFDMEIEEDLVEEVARVYGYNNIPDEPVQASIMGTHREADLSLKRVKTLLNDKGYQEVITYSFVDPKVQQMI----HPGVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNVRIFESGLRFVPDTQAPLGIRQDLMLAGVICGETVDFYDLKGDLESVLDLTGKL-----NEVEFRAEANPALHPGQSAAIYLKGERIGFVGVVHPELERKLDLNGRTLVFELEWNKLA 690
3 -90.2004p71_A mol:protein length:792 Phenylalanine--tRNA ligase beta subunit  ali model follow..  18  101..DFKIKKAKLRGSFGMLCSAKELQ-----ISEENAGLLELPAD-APVGQDVRTYLELADYTIEVGLTPNRGDCLSLAGLAREVSAIYDVPLAPVAVDAVAAQHDETRPVELAAPAACPRYLGRVIRNVDLSRP---TPLWMVERLRRSDIRSDPVVDVTNYVMIELGQPMHAFDLAEGGVRVRMAEDGEKLVLLDGQEITLRADT---------------LVIADHQRALAIAGVMGGEHSGVSDSTRDLFLEAAFFDTIALAGKARSLHTDSSHRFERGVDSQLARKAMERATRLIAHLPKVAPITLRAERVTQMLGMPLDAAEIVRLLQALELTVVADGEG-QWSVGVPSHRFDISLEVDLIEELARLYGYNRLPVRYPQARAPNNKPEARAALPLLRRLLVARGYQEAITFSFIDPALFELF----DPGTQPLTLANPISADMAAMRSSLWPGLVKALQHNLNRQQSVRLFESGLRFVGQLE---GLKQEAMLAGAICGDGVDFFDAKADVEAVLASAGAL-----GDFSFVPGEHPALHPGQTARIEREGRLVGYLGALHPELAKKLDLEQPVFLFELLLAEVV 687
4 -84.5002rhs_B mol:protein length:800 Phenylalanyl-tRNA synthetase beta chain  ali model follow..  18  102..GIKIKRAKLRGSEGMICSLQEIGISSNVVPKAYENGIFVFPTEVEPGTDALTALYLNDQVMEFDLTPNRADALSMVGTAYEVAALYQTEMTKPETQSNETSESATLSVTIDNPEKVPYYSARVVKNVSIEP----SPIWVQARLIKAGIRPNNVVDISNYVLLEYGQPLHMFDQDHKEIVVRQAKDEETMTTLDNNERKLVDTD---------------IVISNGQEPIALAGVMGGDFSEVTEQTTNVVIEGAIFDPVSIRHTSRRLRSEASSRFEKGIATEASGEVLQDRVSSGDLGSFVTPIDITAEKVNKTIGFNLSNDEIQSIFRQLGFETT--LKGETLTVNVPSRRKDITIKEDLIEEVARIYGYDEIPSSLPGEVTSGELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDF---ALQERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKVRLYEIGRVFFGNGEGEL-PDEVEYLSGILTGEEIDFFIAKGVVDRVAEKLNLE-------FSYKAGKIEGLHPGRTAIVSLGGAGIGFIGELHPQVAADNDLK-RTYVFELNYDAMM 695
5 -82.8001b70_B mol:protein length:785 PHENYLALANYL-TRNA SYNTHETASE  ali model follow..  18  100..GQKVGERVIQGSFGMALSPRELG-----VGEYGGGLLEFPEDALPPGTPLSEAWP-EEVVLDLEVTPNRPDALGLLGLARDLHALGY-ALVEPEAALKAEALPLPFALKVEDPEGAPHFTLGYAFGLRVAP----SPLWMQRALFAAGMRPNNVVDVTNYVMLERAQPMHAFDLRGEGIAVRRAREGERLKTLDGVERTLHPEDL--------------VIAGEESFPLGLAGVMGGAESEVREDTEAIALEVACFDPVSIRKTARRLRTEASHRFERGVDPALAGARVAEALLEAGSPKPPEAIPFRPEYANRLLGTSYPEAEQIAILKRLGCRVE--GEGPTYRVTPPSHRLDLRLEEDLVEEVARIQGYETIPLALPAFFPARGVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRF----RLDPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPALLFEVGRVFRER--------EETHLAGLLFGRLSGYFLLKGYLEALFARLGLA-------FRVEAQAFPFLHPGVSGRVLVEGEEVGFLGALHPEIAQELELP-PVHLFELRLPLPD 679
6 -75.4002cxi_A mol:protein length:348 Phenylalanyl-tRNA synthetase beta chain  ali model follow..  32  1MPKFDVSKSDLERLIGRSFSIEEWEDLVLYAKCELDDVWEEN----------------GKVYFKLDSDTNRPDLWSAEGVARQIKWALGIEKGLPKYEVKKSN--VTVYVDEKLKDIRPYGVYAIVEGLRLDEDSLSQMIQLQEKIALTFGRRRREVAIGIFDFDKIKPPIYYKAAEKTE-KFAPLGYKEEMTLEEILEKH---EKGREYGHLIKDKQFYPLLIDSEGNVLSMPPIINSEFTRVTTDTKNVFIDVTGWKLEKVMLALNVMVTALAERGGKIRSVR----VVYKDFEIETPDLTPKEFEVELDYIRKLSGLELNDGEIKELLEKMMYEVEI--SRGRAKLKYPAFRDDIMHARDILEDVLIAYGY....................................................................................................................................................................................................................... 348
7 -59.0003ica_A mol:protein length:213 Phenylalanyl-tRNA synthetase beta chain  ali model follow..  17  1...................................................................................................................................................................................................................................................................................................................................................................................................SNADRRYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGL--KSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHSLYLFEWGKCYRFHAAKRTAYAEDDRLGIWICGEPTSVFELKAVVEQVLCRVGIETGAY-----TLKTADNDLYASAMEVKTRSGKLLGTFGTVSTELIKRFEIEQPVYFAELLWDALM 213
8 -58.9003ig2_A mol:protein length:213 Phenylalanyl-tRNA synthetase beta chain  ali model follow..  18  1...................................................................................................................................................................................................................................................................................................................................................................................................SNADKSNKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGL--ESYPSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNDLKFFEFGNCYHFDAEKKAPYSEDYHLGLWVTGENTSVYELKAYVENIFKRLGLDLHSL-----VVGNLSDDIYSTALTVNTKGGKRLATFGVVTKKMLKAFDVDNEVYYADLNWKELM 213
9 -27.8003cmq_A mol:protein length:415 Phenylalanyl-tRNA synthetase, mitochondrial  ali model follow..  10  2............................................................................................................................................................................................................................................................................................................................................................AAECATQRAPGSVVELLGKSYPQDDHSNLTRKVLTRLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLIPADHPSKGDNYYLNRTHMLRAHTSAHQWDLLHALDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLAVKLVEFDLKQTLTRLMAHLFGD----ELEIRWVDCYFPFTHPSFEMEINFHGEEVLGCGVMEQQLVNSAGAQDRIWAFGLGLERLA 284
10 -23.2005k1p_A mol:protein length:274 Pyrrolysine--tRNA ligase  ali model follow..  12  3..............................................................................................................................................................................................................................................................................................................................................ALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAE----ERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGI---DNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRAPDPIKIFEIGPCYRKESDGKEHLEEFTMLAFAQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMV----------GDTLDVMHGDLELSSAVVGPIPLDREWGIDKPWIGAGFGLERLL 242
11 -22.9004q6g_A mol:protein length:267 Pyrrolysine--tRNA ligase  ali model follow..  12  2..............................................................................................................................................................................................................................................................................................................................................ALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAE----ERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERM---GIDNDTELSKQIFRVDKNFCLRPMVAPNIFNYARKLDRAPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFFQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCSV----------GDTLDVMHGDLELSSAVVGPIPLDREWGIDKPWIGAGFGLERLL 241
12 -21.5004tqd_A mol:protein length:291 Pyrrolysine--tRNA ligase  ali model follow..  13  26..................................................................................................................................................................................................................................................................................................................................................................TDRLEVLLNPKDEISLNSGFRELESELLSRRKKDRENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERM---IDNDTELSKQIFRVDKNF-CLRPMLAPNLYNYLRKLDRAPDPIKIFEIGPCYRKESDGKEHLEEFTMLSFIQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMV----------GDTLDVMHGDLELSSAVVGPIPLDREWGIDKPWIGAGFGLERLL 259
13 -20.0002e3c_A mol:protein length:291 Pyrrolysyl-tRNA synthetase  ali model follow..  13  23...............................................................................................................................................................................................................................................................................................................................................................KSQTDRLEVLLNPKDEISLNSGFRELESELLSRRKKDRENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMG--IDNDTELSKQIFRVDKNF-CLRPMLAPNLYNYLRKLDRAPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMV----------GDTLDVMHGDLELSSAVVGPIPLDREWGIDKPWIGAGFGLERLL 259
14 -19.5003qtc_A mol:protein length:290 Pyrrolysyl-tRNA synthetase  ali model follow..  12  4..............................................................................................................................................................................................................................................................................................................................GLVPRGSHGASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAE-------ERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGI---DNDTELSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRAPDPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMV----------GDTLDVMHGDLELSSALVGPIPLDREWGIDKPWIGAGFGLERL. 255
15 -17.8004cs2_A mol:protein length:274 PYRROLYSINE--TRNA LIGASE  ali model follow..  14  52...................................................................................................................................................................................................................................................................................................................................................................................................ERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGI---DNDTELSKQIFRVDKNFCLRPMLAPNLANYLRKLDRAPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMV----------GDTLDVMHGDLELSSAVVGPIPLDREWGIDKPWIGAGFGLERLL 242
16 -17.6004bw9_A mol:protein length:291 PYRROLYSINE--TRNA LIGASE  ali model follow..  14  74........................................................................................................................................................................................................................................................................................................................................................................................................LGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGI---DNDTELSKQIFRVDKNFCLRPMLAPNLGNYLRKLDRAPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMV----------GDTLDVMHGDLELSSAVVGPRPLDREWGIDKPWIGAGFGLERL. 258
17 -15.5002zni_A mol:protein length:308 Pyrrolysyl-tRNA synthetase  ali model follow..  12  1.............................................................................................................................................................................................................................................................................................................................MGSSSS--GLVPRGSHMFLTRRDPPLSSFWTKVQYQRLKELNASGEQLEMGFSDA-FQGIEHQLEQLRTVKHRPALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGED--HPLFSQVFWLDGKK-CLRPMLAPNLYTLWRELERLDKPIRIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLE-QRLEDMARWVLEAAGIR------EFELVTESSVVY--GDTVDVMKGDLELASGAMGPHFLDEKWEIFDPWVGLGFGLERLL 275
18 -15.5002rhq_A mol:protein length:294 Phenylalanyl-tRNA synthetase alpha chain  ali model follow..  12  1.............................................................................................................................................................................................................................................................................................................................MGSSSSGPRGSHMGTELMEKLNQQLAEETIDVTLPSRQISI-----------------------------GSKHPLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQARTMEKRNGQG-PVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLFGADREIRLRPSYFPFTEPSVCKGKGCNVCKHTGEILGAGMVHPNVLEMAGFDYSGFAFGMGPDRIA 257
19 -14.4003l4g_A mol:protein length:508 Phenylalanyl-tRNA synthetase alpha chain  ali model follow..  12  18................................................................................................................................................................................................................................DGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEGEEIAREGSHEARVFRSIPPEGLAQSELMRLPSGKVGFSKAMSNKWIRVDKDEVQRRLQLVRGGQAEKLGEKERS-KGSAFSTSISKQEELSPEMISSGSWRDRPFKPYNFLAHGHLHPLLKVRSQFRQIFLEMGFTEM-TFFLRDPAEALQLPMDYVQRVKRTHSQKLDEARKNLLRTHTTSASARALYRQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLG------ITQLRFKPAYNPYTEPSMEVFSYHQGLEVGNSGVFRPEMLLPMGLPENVIAWGLSLERPT 465
20 -13.2001b70_A mol:protein length:350 PHENYLALANYL-TRNA SYNTHETASE  ali model follow..  12  6......................................................................................................................................................................................................................................................................................................................LAAIQNARDLEELKALKARYLGKKGLLTQEMKGLSALPLELNAIKAALEAALEAREKALEEAARERVDVSLPASLFSGGLHPITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEDMWDTFWLTGEGVEGRLLLRTHTSPMQVRYMV---AHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFGP----DSKVRFQPVYFPFVEPGAQFAVWWPEGELGGAGMVHPKVFQAVDAGVTGFAFGLGVERLA 323
21 -13.0005x6c_A mol:protein length:553 O-phosphoserine--tRNA(Cys) ligase  ali model follow..  13  24............................................................................................................................................................................................................................................................................................ELAEKDFETAWRETRALIKDKHIDNKYPRLKPVYGVMETIERLRQAYLRMGFEEMINPVIVDEMEIYKQFGPEAMAVLDRCFYLAGLPRPD----VGLGNEKVEIIKNLGIDIDEEKKERLREVLHLYKKGAIDGDDLVFEIAKANVSNEMGLKVLETAESTTLTLRSHMTSGWFITLSSIKKRKLPLKLFSIDRCFRREQREDSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQFGFT----KFKFKPDEKKSKYYTPETQTEVYAYHPEVATFGVYSPIALAKYNIDVPVMNLGLGVERLA 342
22 -12.3003pco_A mol:protein length:327 Phenylalanyl-tRNA synthetase, alpha subunit  ali model follow..  11  3..........................................................................................................................................................................................................................................................................................HLAELVASAKAAISQASDVAALDNVRVEYLGKKGHLTLQMTTLRELPPEERPAAGAVINEAKEQVQQALNARKAELESAALNARLAAETIDVSLPGRRIEN----GGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFDTTRLLRTQTSGVQIRTMKAQQ----PPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFEE----DLQIRFRPSYFPFTEPSAEVDVMGKNGEVLGCGMVHPNVLRNVGIVYSGFAFGMGMERLT 303
23 -11.7002du3_A mol:protein length:534 O-phosphoseryl-tRNA synthetase  ali model follow..  14  10............................................................................................................................................................................................................................................................................................ELAEKDFEAAWKAGKEILAERSPNELYPRVGFSFGKEHPLFATIQRLREAYLSIGFSEVVNPLIVEDVHVKKQFGREALAVLDYLATLPKPNVGISAEKIRQIEAITKREVDSKPLQEIFHRYKKGEIDGDDLSYLIAEVLDVDDITAVKILDEV-LKPISSTLTLRSHMTTGWFITLSHADKLPLPIKLFSIDRCFRREQGEDTRLYTYFSASCVLVDEELSVDDGKAVAEALLRQFGFE----NFRFRKDEKRSKYYIPDTQTEVFAGWIEIATFGIYSPTALAEYDIPYPVMNLGLGVERLA 334
24 -11.4004p71_C mol:protein length:338 Phenylalanine--tRNA ligase alpha subunit  ali model follow..  3..........................................................................................................................................................................................................................................................................................NLDALVSQALEAVRHTEDVNALEQIRVHYLGKKGELTQVMKTLGDLPAEERPKVGALINVAKEKVQDVLNARKTELEGAALAARLAAERIDVTLPGRGQLS----GGLHPVTRTLERIEQCFSRIGYEVAEGPEVEDDYHNFEALNIPGHHPARAMHDTFYFNANMLLRTHTSPVQVRTMESQQP---PIRIVCPGRVY-RCDSDLTHSPMFHQVEGLLVDEGVSFADLKGTIEEFLRAFFEKQLEVRFRPSFFPFTEPSAESGNGCRVCKQTGEVMGCGMVHPNVLRMSNIKFQGFAFGMGAERLA 314

FFAS is supported by the NIH grant R01-GM087218-01
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Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.