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Query: 3pzl_A mol:protein length:313 Agmatine ureohydrolase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSLGGNGREKDHASELRSIFSLKKIADAVNGYEEAKYVVFGIPFDNTSSYRRGSKYAPDSIRGAYVNLESYEYSYGIDLLASGMADLGDMEESEDVEYVIDTVESVVSAVMSDGKIPIMLGGEHSITVGAVRALPKDVDLVIVDAHSDFRSSYMGNKYNHACVTRRALDLLGEGRITSIGIRSVSREEFEDPDFRKVSFISSFDVKKNGIDKYIEEVDRKSRRVYISVDMDGIDPAYAPAVGTPEPFGLADTDVRRLIERLSYKAVGFDIVEFSPLYDNGNTSMLAAKLLQVFIASREKYYKEHIEGLast
1 -112.0003pzl_A mol:protein length:313 Agmatine ureohydrolase  ali model  100  1MSLGGNGREKDHASELRSIFSLKKIADAVNGYEEAKYVVFGIPFDNTSSYRRGSKYAPDSIRGAYVNLESYEYSYGIDLLASGMADLGDMEESEDVEYVIDTVESVVSAVMSDGKIPIMLGGEHSITVGAVRALPKDVDLVIVDAHSDFRSSYMGNKYNHACVTRRALDLLGEGRITSIGIRSVSREEFEDPDFRKVSFISSFDVKKNGIDKYIEEVDRKSRRVYISVDMDGIDPAYAPAVGTPEPFGLADTDVRRLIERLSYKAVGFDIVEFSPLYDNGNTSMLAAKLLQVFIASREKYYKEHIEG 307
2 -91.8001gq6_A mol:protein length:313 PROCLAVAMINATE AMIDINO HYDROLASE  ali model follow..  29  5.....DSHVSPRYAQIPTFMRLPH----DPQPRGYDVVVIGAPYDGGTSYRPGARFGPQAIRSESGLIHGVGIDRGPGTFDINCVDAGDINLPFDMNIAIDTAQSHLSGLLKANAAFLMIGGDHSLTVAALRAVAEPLAVVHLDAHSDTNPAFYGGRYHHGTPFRHGIDLIDPAAMVQIGIRGHKPDSLDYARGHGVRVVTADEFGELGVGGTADLIREGQRPVYVSVDIDVVDPAFAPGTGTPAPGGLLSREVLALLRCVDLKPVGFDVMEVSPLYDGGITSILATEIGAELLYQYARAHRTQ... 312
3 -90.8003lhl_A mol:protein length:287 Putative agmatinase  ali model follow..  31  1...........................MSLNYEESNLIVFGVGFDGTTSNRPGARFASSSMRKEFYGLETYSPFLDLDLEDYNICDYGDLEISGSTEQVLKEIYQETYKIVRDSKVPFMIGGEHLVTLPAFKAVYNDIYVIHFDAHTDLREEYNNSKNSHATVIKRIWDIVGDNKIFQFGIRSGTKEEFKFATEEKHTYMEIGGID---FENIVNML--NGKNIYLTIDLDVLDASVFPGTGTPEPGGVNYREFQEIFKIININIVGCDIVELSPDYDTGVSTVIACKILRELCLIISDKIKE.... 280
4 -89.2003nio_A mol:protein length:319 Guanidinobutyrase  ali model follow..  30  10.....GGNEMPRFGGIATMMRLPHVQSP-AELDALDAAFVGVPLDIGTSLRSGTRFGPREIRAESVMIRPYNMATGAAPFDLNVADIGDVAITFNLLEAVRIIEQEYDRILGHGILPLTLGGDHTITLPILRAIKKKVGLVHVDAHADVNDHMFGEKIAHGTTFRRAVELLDCDRVVQIGLRAQTAEDFNWSRKQGFRVVQAEECWHKSLEPLMAEVREGGGPVYLSFDIDGIDPAWAPGTGTPEIGGLTTIQAMEIIRGCGLDLIGCDLVEVSPPYDTGNTSLLGANLLYEMLCVLPGVVRR.... 319
5 -86.7001wog_A mol:protein length:305 agmatinase  ali model follow..  25  2.....SGPAHLPYGGIPTFARAPLVQPD--GDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKLQGVTFADAGDVILPLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACELPNLVHITTVGLRGLDPEAVAAARARGHTIIPMDDVTADLAGVLAQLP--RGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAANNTVVGLDLVELAPNLDTGRSELLMARLVMETLCEVFDHV...... 304
6 -86.3004dz4_A mol:protein length:324 Agmatinase  ali model follow..  21  22.....GSSIENTYAGVLSFMRRNY----TRDLDGVDVVVSGVPLDLATTFRSGARLGPSAVRAASVQLAELNPYPWGFFDDLAVIDYGDCWFAHHPLSIKPAIVEHARTILQSDARMLTLGGDHYITYPLLIAHAKPLSLIHFDAHCDTWADDAPDSLNHGTMFYKAVKLIDPKASVQVGIRTWNDDYL------GINVLDAAWVHEHGARATLERIESGGRPAYLTFDIDCLDPAFAPGTGTPVAGGLSSAQALAIVRGLGVNLIGADVVEVAPAYDSEITAIAAAHVACDLLCLWRQRKAGAR.. 324
7 -86.0003nip_A mol:protein length:326 3-guanidinopropionase  ali model follow..  26  10.....DAAEIPRFAGIPTFMRLPAF----TDPAALQVGLIGVPWDGGTTNRAGARHGPREVRNLSSLMRKVHHVSRIAPYDVRVGDLGDAPVPIDLLDSLRRIEGFYRQVHAAGTLPLSVGGDHLVTLPIFRALGRPLGMVHFDAHSDTNDRYGDNPYTHGTPFRRAIELLDPLRTVQIGIRGSSPDDDAFARECGIRVIHMEEFVELGVEATLAEARRGAGPTYVSFDVDVLDPAFAPGTGTPEIGGMTSLQAQQLVRGLGLDLVGADVVEVSPPFDGGATALVGATMMFELLCLLAESAARSA.. 318
8 -79.8004rhm_A mol:protein length:351 Arginase  ali model follow..  20  2.........GSSSSGLVPRGSHMF-----------SKFLMNVKGVTPRGSDWANRLGPVALFGYGAGMPRRAPLLDFFLQELTIHDKGPIECPPTSDEWYLGSLEASTELLEKGYVPVSVGGDGSATLSMVEAYKRDIVIVHFDAHPDVSD--------PRSPLRVLLDKGLLKGVVSVGNRQVSSEDRKVRKLHKMFYMDMHAIYSKGLFCIRDIR--NDYPVFISIDADVLDPAFAPAVDSPVAGGLSTRDLLHIMNGIGPKVVGIDVYGYNPDLDVGLTAIALSKIIKEGILKAYSISTHTEEE 323
9 -79.2002a0m_A mol:protein length:316 ARGINASE SUPERFAMILY PROTEIN  ali model follow..  20  4..........AARTDDPRLLSLFS----AQREEDADIVIIGFPYDEGCGGRAGAKKGPAAFRFFLQRLGSVNNLELVDASHLKLYDAGDITA-STLEEAHEKLESKVFTVLARGAFPFVIGGGNDQSAPNGRAMLRDVGVINVDSHLDVRPPLQDGRVHSGTPFRQLLESFSGKRFVEFACQGSGALHAQYVRDHQGHLMWLSEVRKKGAVAALEDAGLTGKNTFFSFDVDSLKSSDMPGVSCPAAVGLSAQEAFDMCFLAGKTVMMMDMSELNPLVEEYRSPRVAVYMFYHFVLGFATRPKPKAEN 310
10 -78.6003m1r_A mol:protein length:322 Formimidoylglutamase  ali model follow..  23  7YPFLREAGSSFKDRDVTKMSDLIA---TWDGQDIKGPALIGVPLSKSSISHSGASFAPGTIRQALKHSSAYSAELGEHVVSELLYDLGDIDIHTDIVKSHHHIFQTMHALLSDHPVPLILGGDNSISYSTIKAIAQTTAVIQFDAHHDVRNTEDG-GPTNGTPFRRLLDIIEGQHLIQLGIREFSQAYEAYAKKHNVNIHTMDMIREKGLIPTIKEILPKTDFIFISVDMDVLDQSHAPGCPAIGPGGLYTDELLEAVKYIAQNVAGIEIVEVDPTLDRDMTSRAAAHVLLHALKGMKLSPFK.... 322
11 -77.3004rhi_A mol:protein length:351 Arginase  ali model follow..  19  2.........GSSSSGLVPRGSHMFS-------KFLMNVKGVTPRG----SDWANRLGPVALFGYGAGMPRRAPLLDFFLQELTIHDKGPIECPPTSDEWYLGSLEASTELLEKGYVPVSVGGDGSATLSMVEAYKRDIVIVHFSARPSVSD--------PRSPLRVLLDKGLLKGVVSVGNRQVSSEDRKVRKLHKMFYMDMHAIYSKGLFCIRDIR--NDYPVFISIDASVLDPAFAPAVDSPVAGGLSTRDLLHIMNGIGPKVVGIDVYGYNPDLDVGLTAIALSKIIKEGILKAYSISTHTEEE 323
12 -69.9005ynl_A mol:protein length:362 Arginase  ali model follow..  22  21....ERQHMDSPDLGTDDDDKMSPATS-PFLATPRTAGIVGCPFSGG-QPKAGVHSGPLQLIESGLLNDIENLGWTVDLAVSIVSDTPDPDIGRLVSRVTKDVADRVYAHASKGQLTVTLGGDHSLAMGTVSGTFKEACLIWVDAHADINTPHTTSGRLHGCPVSFLLGLLKPERIVYIGLRDIDAGERKILKDNNIKCFSMFHVDKYGIGKVVEMAPDRTRPIHLSFDVDALDPSVAPSTGTAVRGGLTFREGHYICEAIAELLVSLDIMEINPSLGALASVAQTVDVGRSLVRCALGET...... 354
13 -68.6001pq3_A mol:protein length:306 Arginase II, mitochondrial precursor  ali model follow..  26  2...................................SVAVIGAPFSQG-QKRKGVEHGPAAIREAGLMKRLSSL-------GCHLKDFGDLSFTPSVGLANQELAEVVSRAVSDGYSCVTLGGDHSLAIGTISGHARDLCVVWVDAHADINTPLTTSGNLHGQPVSFLLRCISSASIVYIGLRDVDPPEHFILKNYDIQYFSMRDIDRLGIQKVMERTFDRQRPIHLSFDIDAFDPTLAPATGTPVVGGLTYREGMYIAEEIHNLLSALDLVEVNPQLASEEEAKTTANLAVDVIASSFGQTRE.... 305
14 -68.4001t5f_A mol:protein length:314 Arginase 1  ali model follow..  25  2...................................PIEIIGAPFSKGCP-RGGVEKGPAALRKAGLVEKLKETEYNVRDHDLAFVDVPNDSPPRSVGKANEQLAAVVAETQKNGTISVVLGGDHSMAIGSISGHARDLAVIWVDAHTDINTPLTTSSGNAGQPVAFLLKAISAKDIVYIGLRDVDPGEHYIIKTLGIKYFSMTEVDKLGIGKVMEETFSKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREGLYITEEIYKLLSGLDIMEVNPTLGTPEEVTRTVNTAVALTLSAFGTKRE.... 304
15 -68.1001d3v_A mol:protein length:323 PROTEIN (ARGINASE)  ali model follow..  24  2..............................SSKPKPIEIIGAPFSKG-QPRGGVEKGPAALRKAGLVEKLKETEYNVRDHDLAFVDVPNDSPPRSVGKANEQLAAVVAETQKNGTISVVLGGDHSMAIGSISGHARDLCVIWVDAHTDINTPLTTSGNLHGQPVAFLLKCISAKDIVYIGLRDVDPGEHYIIKTLGIKYFSMTEVDKLGIGKVMEETFSKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREGLYITEEIYKLLSGLDIMEVNPTLGTPEEVTRTVNTAVALTLSCFGTKRE.... 309
16 -67.3001wva_A mol:protein length:322 Arginase 1  ali model follow..  24  2..............................SAKSRTIGIIGAPFSKG-QPRGGVEEGPTVLRKAGLLEKLKEQECDVDYGDLPFADIPNDSPPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHARDLGVIWVDAHTDINTPLTTSGNLHGQPVSFLLKCISAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYREGLYITEEIYKLLSGLDIMEVNPSLGTPEEVTRTVNTAVAITLACFGLARE.... 309
17 -66.9002eiv_A mol:protein length:291 Arginase  ali model follow..  27  3...................................RVAVVGVPMDLGAN-RRGVDMGPSALRYARLLEQLEDL-------GYTVEDLGDVPVSLEEIRAAALVLKERLAALPEGVFPIVLGGDHSLSMGSVAGAARRVGVVWVDAHADFNTPESPSGNVHGMPLAVLSGLVDPKDVVLVGVRSLDPGEKRLLKEAGVRVYTMHEVDRLGVARIAEEVLKQGLPLHVSLDADVLDPTLAPGVGTPVPGGLTYREAHLLMEILAERVQSLDLVEVNPILDRNRTAEMLVGLALSLLGKRI......... 290
18 -63.1004q3p_A mol:protein length:385 Arginase  ali model follow..  20  1MGSSSSGLVPRGSHMMLKSVATPYYPDEKPKLLYTSANFLGIPTNRG-QPKIGTYQGPELIRKSNFFQLVAEDGIQLDCGDIIPVELNEAEDPERVEELMKQSNKHTVELSGSKSTPVIVGGDHSMATGTILGHKPDLCVLWIDAHGDINTPLNSSGNMHGMPLSFLVKCLNASNIAYIGLRDLDAHETHDIRKHGIAYFTMLDVDRMGIEAVIKEALLLEKAIHLSFDIDALDPLVAPSTGTAVPGGLTLREGLRICEEVSAKLSVVELAELNPLLGSQKTQSSAVHILRACLGHCRSGHLPFK.. 359
19 -63.1006dkt_A mol:protein length:296 Arginase  ali model follow..  25  2.................................DKTISVIGMPMDLGQA-RRGVDMGPSAIRYAHLIERLSDM-------GYTVEDLGDIPINNSVLAGNEKLAQKVNKVIEEKKFPLVLGGDHSIAIGTLAGTAKNLGVIWYDAHGDLNTLESPSGNIHGMPLAVSLGKIKPENVVIIGARSLDEGERKYIKESGMKVYTMHEIDRLGMTKVIEETLDACDGVHLSLDLDGLDPNDAPGVGTPVVGGISYRESHLAMEMLYDIITSAEFVEVNPILDKNKTGKTAVELVESLLGKKL......... 295
20 -63.0001cev_A mol:protein length:299 PROTEIN (ARGINASE)  ali model follow..  25  3...................................PISIIGVPMDLGQT-RRGVDMGPSAMRYAGVIERLERLHYDIEGKAERLHEQGDSRLRKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKRLGVIWYDAHGDVNTAESPSGNIHGMPLAASLGKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEELKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEIITSAEFVEVNPILDRNKTASVAVALMGSLFGEKL......... 298
21 -62.9001xfk_A mol:protein length:336 Formimidoylglutamase  ali model follow..  18  19.....DGQAGRRVHHIACPIQVG-----ELANQEPGVALIGFECDAGVKGRTGAKHAPSLIKQALANLAWHH--------PIPIYDLGNIRCEGELEQAQQECAQVIQQALPHA-RAIVLGGGHEIAWATFQGLAQRIGIINFDAHFDLRSELAPVRPSSGTPFNQIHHFCQQQHYACLGVSRATPALFERADKLGVWYVEDKAFSPLSLKDHLTQLQHDCDYLYLTIDLDVFPAASAPGVSAPAARGVSLEALAPYFDRIKNKLMIADIAEYNPSFDDQHTARLAARLCWDIANAMAEQVQSIRH. 335
22 -61.9004ity_A mol:protein length:330 Arginase  ali model follow..  24  1...........................MRGSGMAKKMSIVLAPFSGGQP-HSGVELGPDYLLKQGLQQDMEKLGWDTRVEARKASDNGDRIGRRLTAECTEKIYKCVRRVAEQGRFPLTIGGDHSIALGTVAGVHPDAGVIWVDAHADINTMSGTSGNLHGCPLSILLGVLKPNKIAYIGLRAVDDEEKKILHDLNIAAFSMHHVDRYGIDKVVSMAIEGTEPVMVSYDVDTIDPLYVPATGTPVRGGLSFREALFLCERICGRLVALDVVECNPLLATESHVNDTISVGCAIARCMMGETL..... 314
23 -60.5004g3h_A mol:protein length:330 Arginase (RocF)  ali model follow..  16  1....................................MILVGLEAELGAS-KRGTDKGVRRLREALSATHGDVIKGMQTITQERCVLYKEFRFEDYYLFCKENLIPCMKEVFEKKEFPLILSSEHANMFGIFQAFRSKIGILYLDAHADIHTAYDSSKHIHGMPLGMVLNRIDPKCLVYFGVRSTEQSERDVIRELQIPLFSVDAIRE-NMQEVVQKTKEAVDIIYLSLDLDIMDGKLFTSTGVRENNGLSFDELKQLLGLLLERLKAVEVTEYNPTVSIKEEEKQVLEILDLIINSCKIKDKKHS.. 317
24 -55.9003mmr_A mol:protein length:413 Arginase  ali model follow..  18  78............................TNNYINNNDNNNDNNNDNNNDNNNNCYIPNGVIKEKKHDLSNNKMNGYVNHNENNVISTNDKYKNNEIGIFSKNLFDTMSNELRKKNFVLNIGGDHGVAFSSILSSYQNLRVIWIDAHGDINIPESPSGNYHGMTLAHTLGLLKPENTAIIGIRDIDAYEKIILKKCNINYYTIFDIEKNGIYNTICTALESNCPIHISLDIDSVDNVFAPGTGTVAKGGLNYREINLLMKILTKRVVSMDLVEYNPSLDVDKKVHGDSLPILDNATKTGKLCLE.... 396

FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 0 8 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.