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Query: 3qne_A mol:protein length:485 Seryl-tRNA synthetase, cytoplasmic, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLDINAFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVDSQDEENNELVRTWTPENYKKPEQIAAATGAPAKLSHHEVLLRLDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGEDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKYDLEAWFPFQQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYVHCLNSTLSATERTICCILENYQKEDGLVIPEVLRKYIPGEPEFIPYIKELPKNTTSVKKAKGKNPKNTTSVKKAKGKNGSRLast
1 -145.0003qne_A mol:protein length:485 Seryl-tRNA synthetase, cytoplasmic  ali model  100  1MLDINAFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVDSQDEENNELVRTWTPENYKKPEQIAAATGAPAKLSHHEVLLRLDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGEDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKYDLEAWFPFQQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYVHCLNSTLSATERTICCILENYQKEDGLVIPEVLRKYIPGEPEFIPYIKELPKNTTSVKKAKGKNPKNTTSVKKAKGKNGSR 479
2 -118.0003vbb_A mol:protein length:522 Seryl-tRNA synthetase, cytoplasmic  ali model follow..  45  2VLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGD-----------CTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGSYDEKYLIATSEQPIAALHRDEWLRP--EDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQLIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENR 505
3 -116.0002dq3_A mol:protein length:425 Seryl-tRNA synthetase  ali model follow..  35  1MIDINLIRE----KPDYVKERLATRDKELVLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSVPVGEDEKDNVEVRRWGEP----------RKFDFEPKPHWEIGERLGILDFKRGAKLSGSRFTVIAGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKC--ERDNLYLIPTAEVPLTNLYREEILKE--ENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLPYRVVELCTGDLGFSAAKTYDIEVWFPSQNKYREISSCSNCEDFQARRMNTRFK--DSKTGKNRFVHTLNGSGLAVGRTLAAILENYQQEDGVVVPEVLRDYVGTDVIRPE.................................... 425
4 -114.0002dq0_A mol:protein length:455 Seryl-tRNA synthetase  ali model follow..  38  1MLDIKLIRE----NPELVKNDLIKRGEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGKDENDNVPIRFWGKARVWKGHLEEYEILEWKPKLHVDLLEILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKV--EDEDLYLIPTAEHPLAGMHANEILDG--KDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIPYRVVNICTGDLGYVAAKKYDIEAWMPGQGKFREVVSASNCTDWQARRLNIRFR--DRTDEKPRYVHTLNSTAIATSRAIVAILENHQEEDGVRIPKVLWKYTGFKEIVPVEKKE................................ 450
5 -113.0006blj_A mol:protein length:485 Serine-tRNA ligase  ali model follow..  48  3MLDINLFREYKGGNPEIIRESQRRRFADVTLVDKVIELDEVWRATIGKLNHIKSFTGIISKEVGNRMKNKNTNQLKKLSTYITEVHIKNSEEEVKQKEKERDDVLLQIGNIVHETVVVSDNEDNNGIVRMVGNPRPKV-----DPETGYKCLKHIDIMRKLGGLATEEGTQVGGGRGYFLLGDLVRMNLALQNYAIDFLAKKGYMPIYTPFFMTKEQMKKVAQLSQFDEELYTVTGEGEDKYLIATSEQPIAAFHLEKRFDE--SELPIKYCGMSTCFRKEVGAHGKDTLGIFRVHQFEKIEQFVVTSPKDSWEMFDEMIGNSEAFYQSLGIPYRVVNIVSGALNNAAAKKFDLEAWFPGGNEYRELVSCSNCTDYQTRRLEVKYGKSKKQGSEVEFCHMLNSTLTATSRTLCCIVENYQTPEGVNVPEVLQPYMGGTKFIKF.................................... 477
6 -113.0001ser_A mol:protein length:421 PROTEIN (SERYL-TRNA SYNTHETASE (E.C.6.1.1.11))  ali model follow..  29  1MVDLKRLRQ----EPEVFHRAIREKGVALD-LEALLALDREVQELKKRLQEVQTERNQVAKRVPKA--PPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAPVGGEEANREIKRVGGPP------------EFSFPPLDHVALMEKNGWWEPRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAI--AETDLYLTGTAEVVLNALHSGEILPY--EALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEAEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYR---DPEGRVRYAYTLNNTALATPRILAMLLENHQLQDGVRVPQALIPYMGKEVLEPC.................................... 420
7 -109.0003lsq_A mol:protein length:484 Seryl-tRNA synthetase  ali model follow..  43  7VLDIQLFRDET--GANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKECVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVPIAQDEETGNTVVRTFGN----------TTKRAKLNHVSIMERLGMMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTE--LKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSQEESWRHLEDMITTSEEFNKSLGLPYRVVNICSGALNNAAAKKYDLEAWFPASGAFRELVSCSNCTDYQSQSVNCRYGPNLRGQNVKEYCHMLNGTLCAITRTMCCICENYQTEEGVVIPDVLRPYMMGIEMIRFENNAQAEGTTPDKGE..................... 484
8 -104.0003err_A mol:protein length:536 fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA synthetase from Thermus thermophilus  ali model follow..  26  110..QIRSIIM----RENFIPTIVNFSAEEIS-DAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLEALLLQVPLPPWPGAPVGGEEANREIKRVGGPP-----------EFSFPPLDHVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAI--AETDLYLTGTAEVVLNALHSGEILPY--EALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLSDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYR---DPEGRVRYAYTLNNTALATPRILAMLLENHQLQDGVRVPQALIPYMGKEVLEPG.................................... 529
9 -104.0001wle_A mol:protein length:501 Seryl-tRNA synthetase  ali model follow..  24  34LLDMESLCA----YPEDAARALDLRKGELRSLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPDVPVGDESQARVLHVVGD-----------KPAFSFQPRGHLEIAEKLDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDRFEDLNLAGTAEVGLAGYFMDHSVAF--RDLPIRMVCSSTCYRAETD-TGKEPWGLYRVHHFTKVEMFGVTGPEQSSELLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMFQ---TEAGELQFAHTVNATGCAVPRLLIALLESYQQKDGVLVPPALQPYLGTDRITTPTHVPLQYIGPNQPQKPRLPGQPASS........... 495
10 -58.2003w3s_A mol:protein length:527 Type-2 serine--tRNA ligase  ali model follow..  13  23EPTVEEFVKE--ANEDLLQRGVPTGKEGAKILYDTIYMEITGTRYLRPHEAAMRVRKRLAERLGRKHRVGYDYVGYVPVADDVVVEDGTVRLTFQDVDEERRHVIDRVIRLVAWAVEERSELVERVTKVEPGT----------VVDESGPRRIRFRGDVTEEARRRGWVKEFPGRGQWIYTPPMAALFEVLRDFLLERVTRKGFEPALFPKLIPLETMFRMRYLHGLPDGMYYVCPRDPGYVLAPAQCEPFYELLRDEVVDP--ERLPIKYDCSGWTYRWEGGA----AKGLERVNEFQRIEHVWIAEPEEAYRIRRELLEATKRVAEELELEWKVVLLEDRDIELPDVPSYEFEVYLPFKGERSSEEAWISVGSFNVHGEHFVDGF--NVKEKSGRTLFTGCAGLGVTRWVVGLLAQHGFYPYEPILERIDEKFGGLPEVPKTLT................................. 524
11 -49.4004p3n_A mol:protein length:415 Threonine--tRNA ligase, cytoplasmic  ali model follow..  14  1.................................................................................................................................................MGSSSSGDHRKIGRDQELYFFHE----LSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH--PRSWRELPLRLADFGVLHRNELSGA---LTGLTRVRRFQQDDAHIFCAMEQIEDEIKGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGDIEVWDQAE-NSGDGAFGRYHQCATIQLDFQLPIRFNLTYVSHDGDDKRPVIVHRAILGSVERMIAILTENYGGKWPFWLSPRQVMVVPVGPTCDEYAQKVRQQFHDAKFMADIDDPGCTLNKKIRNAQLAQ 355
12 -49.3001nyq_A mol:protein length:645 threonyl-tRNA synthetase 1  ali model follow..  14  107....................................DFDIDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTFDKKELKAHLQMLEERKERDHRKIGKELELFTNS---QLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMLDETESMVLRPMNCPHHMMIYAN--PHSYRELPIRIAELGTMHRYEASG---AVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWAIGEAAFGKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPKQVQIIPVNVDLYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQK 596
13 -48.9004hwt_A mol:protein length:413 Threonine--tRNA ligase, cytoplasmic  ali model follow..  13  2......................................................................................................................................................ARDHRKIGRDQELYFFHE----LSPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEL-FALKPMNCPGHCLMFDH--PRSWRELPLRLADFGVLHRNELSGA---LTGLTRVRRFQQDDAHIFCAMEQIEDEIKGCLDFLRTVYSVFGFSFKLNLSTRPEKFLGDIEVWDQAE-NSGDGAFGRYHQCATIQLDFQLPIRFNLTYVSHDGDDKRPVIVHRAILGSVERMIAILTENYGGKWPFWLSPRQVMVVPVGPTCDEYAQKVRQQFHDAKFMADIDDPGCTLNKKIRNAQLAQ 351
14 -48.4003a31_A mol:protein length:471 Probable threonyl-tRNA synthetase 1  ali model follow..  10  4.....................................................................................................................................GQDKTHIDYAYELDITVKPDSRVPVFNREFATF------TGAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDIEGHE-FAVKPMNCPYHILLFLNEVAKSKLPLPFKVFEFGRVHRYEPSG---SIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFETFKVRLSMSDKSLIGKEFMGSKEEWLEGEAAFSKEWQMGTIQFDFNLPRRFRLYDVVREFGIEEVYIIHRALLGSIERFLGVYLEHRRGRMPFTLAPIQFAVIAVKTEIEDLASSIAKGLLDKGFRVAVKGSSKTLSSDVRHIESTA 395
15 -47.9004hwo_A mol:protein length:411 Threonine--tRNA ligase  ali model follow..  17  2......................................................................................................................................................ARDHRKIGKQLDLYHMQE----EAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENRE-YCIKPMNCPGHVQIFNQ--LKSYRDLPLRMAEFGSCHRNEPSGS---LHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTR----PEKRIGSDEMWQLGEGAFDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRR 350
16 -47.4001qf6_A mol:protein length:642 THREONYL-TRNA SYNTHETASE  ali model follow..  15  104.YDVDLDRTLTQEDVEALEKRMH----------ELAEKNYDVIKKKVSWHEAR----ETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQE----EAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENRE-YCIKPMNCPGHVQIFNQ--LKSYRDLPLRMAEFGSCHRNEPSGS---LHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTR----PEKRIGSDEMWQLGEGAFDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRR 589
17 -46.7003ugq_A mol:protein length:460 Threonyl-tRNA synthetase, mitochondrial  ali model follow..  13  2.......................................................................................................................GSSSSGLVPRGSHMASATK-----NASSATPATMTSMVSQRQDLFMTDP----LSPGSMFFLPNGAKIFNKLIEFMKLQQKKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVEDEEKEEYGLKPMNCPGHCLIFGK--DRSYNELPLRFSDFSPLHRNEASGA---LSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKGGSGAESNYFINFSTR-DLKVWNPGDGAFRKTHQVATIQLDFQLPERFDLKFKDQDNSYKRPIMIHRATFGSIERFMALLIDSNEGRWPFWLNPYQAVIIPVNTKNVQQLDMCTAPLNDWHFNVDLDIRNEPVGYRIKSAILKN 406
18 -45.9004h2w_A mol:protein length:346 Amino acid--[acyl-carrier-protein] ligase 1  ali model follow..  13  1...........................................................................................................MGSSSSGLVPRGSHMNIAVLPN--------------------SPDTAPQIADPLDHLADKLFHSMGSDGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGSPADLVLSPAACYPVYPIAASRGPL---PKGGLRFDVAADCFRREPS------KHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLGLTFRVDYASLANNQRDQQLKFELLIPLRSEEQPTACMSFNYHREHFGTTWGIQD-------ANGEPAHT-GCVAFGMDRLAVAMFHTH-GTDLSAWPAKVRDILGLQPHVAA.................................... 332
19 -45.1003mey_A mol:protein length:346 Bll0957 protein  ali model follow..  13  1...........................................................................................................MGSSSSGLVPRGSHMNIAVLPN--------------------SPDTAPQIADPLDHLADKLFHSMGSDGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGSPADLVLSPAACYPVYPIAASRGPL---PKGGLRFDVAADCFRREPS------KHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLGLTFRVDYASKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYHREHFGTTWGIQD-------ANGEPAHT-GCVAFGMDRLAVAMFHTH-GTDLSAWPAKVRDILGLQPHVAA.................................... 332
20 -38.6002cim_A mol:protein length:522 SERYL-TRNA SYNTHETASE  ali model follow..  14  30..DPTPAKDAIAALFEEANSTLLTRGAPEGQGAKVTEWKLGEDRIELTLDAIFRLRKQLAEALGKKYKIGIRGIEVESFIIKVPADHELRMLKVPYIKSMENIEGGIQLELEVGEAEMKNRVPDRILIEAAQYGAKAEHWNLLWQREPMEHPFKEDPTQAM--MKEGWLKRGSSRGQWIHGPQSARIFRTFEKIVLEELLEPGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPAEPIGGMCYAQCPPFWMYVAGETL--PNEEIPVKVFDRGTSHRYESGG----IHGIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDILDIEWRKARVTGLAEENTVGTTDYEACLPPDGEWLEFQNVSINGDKYPKGFNVKL-------QSGDELWS-GCSGVGLERWAAVFLAQKGLDPANW-PEEFRNRV............................................ 506
21 -37.5002i4l_A mol:protein length:458 Proline-tRNA ligase  ali model follow..  11  13..........................................................................................................................SHMRLSRFFLPILKENPK-------EAEIVSHRLMLRA---------LRQEAAGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRAYI-KSYKSLPLNLYHIQWKFRDEQ----RPRFGVMRGREFLMKDAYSFDVDEAGRKSYNKMFVAYLRTFARMGLKAIPMRAETGPIGGDLSH----EFIVLAETGESGVYIDRDVLTKYSDSMKANVTGPDGTDAPI----HGGSYGVGVSRLLGAIIEACHDDNGIIWPEAVAPF-QGDAATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFATADL.. 410
22 -36.1004k86_A mol:protein length:535 Proline--tRNA ligase  ali model follow..  13  2.......................................................................................................................GSSSSGLVPRGSHMASGAGEGQGPKKKEENLADWYSQVITKSEMIEYH-----DISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSAEPIAIRPTSETVMYPAYAKWV-QSHRDLPIKLNQWCNVVRWEF----KHPQPFLRTREFLWQEGHSAATMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFE---DPKIPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACV-EDKEALIAKCNDYRRRLLSVNIRVRADLRNYSPGWKFNHWELK. 378
23 -34.9001nj1_A mol:protein length:501 Proline-tRNA Synthetase  ali model follow..  13  6.................................................................................................................SGLVPRGSHMQKPIKKDPNRYHGEKMT-------EFSEWFHNILEE-AEIIDQ----RYPVKGMHVWMPHGFMIRKNTLKI-LRRILDRDHEEVLFPLLVEDELAKEAIHVKGFEDEVYWVTSKLQRKLALRPTSETVMYPMFALWV-RSHTDLPMRFYQVVNTFRYETKHT---RPLIRVREITTFKEAHIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGSEYTVAFDTLMPDGKTL-QIGTVHNLGQTFARTFEIKFETPEGDHE-----YVHQTCYGLSDRVIASVIAIHGDESGLCLPPDVAAH-KAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWEMRG 363
24 -34.8005xil_A mol:protein length:512 Putative prolyl-tRNA synthetase  ali model follow..  12  1...............................................................................................................................................GAMGIAAKREENFSAWYIDVITKAEMIEYDVSGCYIIRPWAYYVWKCVQRFLGGKIEKLGVEDCYFPMFVSRSLEREKDHIEGFAPEVAWVTTELEQPVAVRPTSETVMYPYYAKWI-RSHRDLPVRLNMWNNVIRWEF----SHPTPFIRTREFLWQEGHCAAKAEECAKEVLEILECYASVYEQLLAVPVVRGRKTEEKFAGGDYTTTVETFIEAVGRGCQGATSHNLGQNFGKMFDIRFQ---DPENNEQTLIPWQNSWGLSTRVIGVMIMVHGDNRGMVMPPRVAST-EARQELLASCWRLESELCEGGVRARCDLRDNSPGWRFNHWEVKG 351
25 -34.5004hvc_A mol:protein length:519 Bifunctional glutamate/proline--tRNA ligase  ali model follow..  13  3......................................................................................................................SGEGQGPKKQTRLGLEAKKEENL---------ADWYSQVITKSEMIEYH-----DISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRAEPIAIRPTSETVMYPAYAKWV--QSHRDLPIKLNQWCNVVRWEF----KHPQPFLRTREFLWQEGHSAATMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFE---DPKIPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACV-EDKEALIAKCNDYRRRLLSVNIRVRADLRNYSPGWKFNHWELK. 362
26 -32.9005f9y_A mol:protein length:511 Aminoacyl-tRNA synthetase  ali model follow..  14  2..........................................................................................................................ASKENESLLGITADKI---------TSFADWYSQVIVKSEMIEYY-----DISGCYILRPWSYFIWETIQSVFDQKIKQHDVQNAYFPIFVTQKLETEKDHVEGFSPEVAWVTSDLAEPIAIRPTSETIMYPYFAKWI-RSHRDLPLKINQWTSIVRWEF----KHPTPFIRTREFLWQEGHTAHSTRKALEMVDIILNEYASIYEDLLATPVVKGTKSEEKFPGGDITKSIEGFIPEIGRAVQAATSHLLGQNFSKMFGVEFEDEKGNKE-----YAHQTSWGLTTRAIGVMIMTHGDNKGLVLPPKVAPV-VITEEQKKICNEVECILKKAGVRVKIDDRNYTPGWKYNHWEVK. 351
27 -32.3004ncx_A mol:protein length:506 Proline--tRNA ligase  ali model follow..  12  11................................................................................................................................................KKIENFSDWYTQVIVKSELIE-----YYDISGCYILRPAAYYIWECVQAFFNKEIKKLNVENSYFPLFVKNKLEKEKNHIEGFSPEVAWVTKYPEEIAIRPTSETIMYSVFPKWI--RSYRDLPLKLNQWNTVVRWEF----KQPTPFIRTREFLWQEGHTAKNEEEAVKLVFDILDLYRRWYEEYLAVPIIKIKSEGEKFGGANFTSTAEAFISENGRAIQAATSHYLGTNFAKMFKIEFEDENEVKQ-----YVHQTSWGCTTRSIGIMIMTHGDDKGLVLPPNVSKY-TDENAIHSYCKDIEKILKNAQINCVYDDRSYSPGYKFNHWELR. 347
28 -31.7001h4q_A mol:protein length:477 PROLYL-TRNA SYNTHETASE  ali model follow..  12  1..............................................................................................................................MAKEKGLTPQSQDFS----------EWYLEVIQKAELADYGPV-----RGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSLRKEAEHVEGFSPELAVVTEELEEPLAVRPTSETVIGYMWSKWI-RSWRDLPQLLNQWGNVVRWEM-----RTRPFLRTSEFLWQEGHTAATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVK-----YVHTTSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPI-ESRERVLEAAQGLRQALLAQGLRVHLDDRQHTPGYKFHEWELKG 343
29 -31.2001nj8_A mol:protein length:459 Proline-tRNA Synthetase  ali model follow..  15  1...............................................................................................................................................GSHMLEFSEWYSDILEKAEIYDVRYPI----KGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAHIKGFEDEVYWVTTQLDVKLALRPTSETPIYYMMKLWV-KVHTDLPIKIYQIVNTFRYET----KHTRPLIRLREITFKEAHTASTKEEAENQVKEAISIYKKFFDTLGIPYLISKRPEWDKFPGAEYTMAFDTIFPDGRTM-QIATVHNLGQNFSKTFEIIFETPTGDKD-----YAYQTCYGISDRVIASIIAIHGDEKGLILPPIVAPIFKGKEDIVMEKAKEIYEKLKGKFRVHIDDRDIRPGRKFNDWEIK. 335
30 -30.8005xip_A mol:protein length:498 Prolyl-tRNA synthetase, putative  ali model follow..  14  8................................................................................................................................................KKSTNFADWYTQVIVRGELVE-----YYDISGCYIIRPWAYRIWEAVQKFFDDGIKRLGVENCYFPMFVQAKLEKEKDHVEGFKPEVAWVTHYPEKVAIRPTSETIMYPAYAKWI--RSHRDLPLKLNQWNNVVRWEF----KQPTPFLRTREFLWQEGHTAATEEEAYTLVLEILELYRQWYEDYLAVPVIKGEKSENEKFAGKKTTTIEGIIPDTGRGIQAATSHLLGQNFSRMFSIEFEDEKGAKQ-----LVHQTSWGCTTRSLGVMIMTHGDDKGLVLPPRVVAV-TGGMEIVAKCRELERLLNAAGVRVKVDDRNYTPGWKFNDWELK. 344
31 -30.7003ial_A mol:protein length:518 Prolyl-tRNA synthetase  ali model follow..  10  2.....................................................................................................................................AMGGDVTFSLTKTRDTFADWFDAIMDAAELVDRRYPV----KGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKESDHIKGFEAECFWVEQPLEERLALRPTSETAIYSMFSKWV-RSYKDLPLKIHQTCTIFRHET----KNTKPLIRVREIHWNEAHCCHATAEAVSQLSDYWKVIDTIFSDELCFKGQKLRRVCWDRFPGADYSEVSDVVMPCGRVLQTAGIHNLGQRFSSTFDILYANKANESV-----HPYLTCAGISTRVLACALSIHGDSGGLVLPPLIAPI-SDQQVLGKVNEIADTLKSKLGLRVSIDDDSKSMGDKLYYYELKG 355
32 -29.9005xif_A mol:protein length:500 Prolyl-tRNA synthetase (ProRS)  ali model follow..  13  5.............................................................................................................................................TAKKDENFSEWYTQAIVRS-EMIE-----YYDISGCYIMRPWAFHIWEKVQRFFDDEIKKMGVENSYFPMFVSRHLEKEKDHVEGFSPEVAWVTHYPEKIAIRPTSETIMYPAYAKWI--RSHRDLPLKLNQWCSVVRWEF----KQPTPFLRTREFLWQEGHTAATEEEAWELVLDILELYRRWYEECLAVPVIKGEKSEEKFAGGKKTTTVEAFIPENGRGIQAATSHLLGTNFAKMFEIEFEDEEGHKR-----LVHQTSWGCTTRSLGVMIMTHGDDKGLVIPPRVASV-ENTGEILGKCRELKTMLEKADIRVRIDDRNYTPGWKYNHWEVK. 343
33 -27.6001b76_A mol:protein length:442 Glycine--tRNA ligase  ali model follow..  14  9..........................................................................................................................................................VALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVRDDMEGLDASVLTHRLVLHYSGHEATFADPMVDPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPR----NFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWWQEMGLSLVPYQQPPESSAHYAKATVDILYRFP---GSLELEGIAQRTDFRNEHSTQRLAYRDPETGKWFVPYVIEPSA-GVDRGVLALLERIVLKLKPQLAPIVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDTGNIGKAYRRHD... 385
34 -26.1002j3l_A mol:protein length:572 PROLYL-TRNA SYNTHETASE  ali model follow..  13  17...................................................................................................................................................DAEVLSH-QILLRAGYI------RQVAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILPTHEETFTELIRDEI--NSYKRLPLNLYQIQTKYRDEK----RSRSGLLRGREFIMKDGYSFADEASLDQSYRDYEKAYSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTIC-EIGHIFKLGTRYSDAMGATVLDENGREKSV----IMGCYGIGVSRLLSAIVEQNADERGINWPTGIAPF-VKDEYQTKLSQEVEAMMTEAGYEVLVDDRNERAGVKFADADL.. 521
35 -23.8005ucm_A mol:protein length:579 Proline--tRNA ligase  ali model follow..  14  19...................................................................................................................................................DAVVISHQLLLRA---------IRRLASGLYTWLPMGLRVLRKVETIVREEMNAAGALEVLMPAVQPAELWQESGRWEQYGPELLRLKDRHEREFCVGTHEEVITDLARNEL--NSYKQLPINFYQIQTKFRDEI----RPRFGLMRGREFIMKDAYSFLSQDSLQQTYDGMYQAYSKIFSRLGLDFRPVQADNGSIGGSGSHEFHVLA---GEDDIVFSDSSDYAANIEKAEAVPRESARGSATEDMRLVDTMGCYGIGVSRVVAAAIEQNHDERGILWPSALAPF-YETESVKQATDKLYAELTAAGFEVLLDDRDKKTGVKFADMEL.. 526
36 -22.2001ati_A mol:protein length:505 GLYCYL-TRNA SYNTHETASE  ali model follow..  13  81...........................................................................................................................................ATFADPMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPR----NFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWWQEMGLSLVPYQQPPESSAHYAKATVDILYRFP---GSLELEGIAQRTDFRNEHSTQRLAYRDPETGKWFVPYVIEPSAGVDRGVLALLAEAFTREE-LKLKPQLAPIVKNRPEITEYAKRLKARLLALGLGRVLYEDTGNIGKAYRRHD... 448
37 -18.4004cs2_A mol:protein length:274 PYRROLYSINE--TRNA LIGASE  ali model follow..  15  48..................................................................................................................................................................................IYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMG---DNDTELSKQIFRVDKNFCLRPMLAPNLANYLRKLDRALPD--PIKIFEIGPCYRKESDGKE-------HLEEFTMLNFCQM----GSGCTRENLESIITDFLNHLGIDFKIV.............................................................................................................................................. 191
38 -17.5004bw9_A mol:protein length:291 PYRROLYSINE--TRNA LIGASE  ali model follow..  14  65..................................................................................................................................................................................IYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMG--IDNDTELSKQIFRVDKNFCLRPMLAPNLGNYLRKLDRALPD--PIKIFEIGPCYRKESDGKE-------HLEEFTMLNFCQM----GSGCTRENLESIITDFLNHLGIDFKI............................................................................................................................................... 207
39 -16.9003qtc_A mol:protein length:290 Pyrrolysyl-tRNA synthetase  ali model follow..  15  62..................................................................................................................................................................................IYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMG--IDNDTELSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPD--PIKIFEIGPCYRKESDGKE-------HLEEFTMLVFWQM----GSGCTRENLESIITDFLNHLGIDFKIV.............................................................................................................................................. 205
40 -16.9004q6g_A mol:protein length:267 Pyrrolysine--tRNA ligase  ali model follow..  17  59..............................................................................................................................................................................................LEREITRFFVDRGFLEIKSPILIPLEYIERMG---DNDTELSKQIFRVDKNFCLRPMVAPNIFNYARKLDRALPD--PIKIFEIGPCYRKESDGKE-------HLEEFTMLNFFQM----GSGCTRENLESIITDFLNHLGIDFKIVGDSCSVYGDTLDVM----------HGDLELSSAVVGPIPLDREWGIDKP----------------GAGFGLERLLKV................................................................. 243
41 -16.5005k1p_A mol:protein length:274 Pyrrolysine--tRNA ligase  ali model follow..  15  48..................................................................................................................................................................................IYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMG---DNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPD--PIKIFEIGPCYRKESDGKE-------HLEEFTMLAFAQM----GSGCTRENLESIITDFLNHLGIDFKIVGDSCMVYGDTLDVM----------HGDLELSSAVVGPIPLDREWGIDKPWI--------------GAGFGLERLLKV................................................................. 244
42 -15.5004tqd_A mol:protein length:291 Pyrrolysine--tRNA ligase  ali model follow..  15  65..................................................................................................................................................................................IYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMG---DNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPD--PIKIFEIGPCYRKESDGKE-------HLEEFTMLSFIQM----GSGCTRENLESIITDFLNHLGIDFKIVGDSCMVYGDTLDVM----------HGDLELSSAVVGPIPLDREWGIDKPWI--------------GAGFGLERLLKV................................................................. 261
43 -15.5002e3c_A mol:protein length:291 Pyrrolysyl-tRNA synthetase  ali model follow..  15  65..................................................................................................................................................................................IYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMG--IDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPD--PIKIFEIGPCYRKESDGKE-------HLEEFTMLNFCQM----GSGCTRENLESIITDFLNHLGIDFKIVGDSCMVYGDTLDVM----------HGDLELSSAVVGPIPLDREWGIDKPWI--------------GAGFGLERLLKVKHD.............................................................. 264
44 -15.0002zni_A mol:protein length:308 Pyrrolysyl-tRNA synthetase  ali model follow..  15  78..................................................................................................................................................................................LRTVKHRPALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMT---GEDHPLFSQVFWLDGKKCLRPMLAP--NLYTLWRELERLWDKPIRIFEIGTCYRKESQGAQ-------HLNEFTMLNLTEL---TPLEERHQRLEDMARWVLEAAGIR---------EFELVTESSVVYGDTVDVMKGDLELASGAMGPHFLDEKWEIFDPWV--------------GLGFGLERLLMIREGT............................................................. 281
45 -13.7002pme_A mol:protein length:693 Glycyl-tRNA synthetase  ali model follow..  14  4.......................................................................................AGAEEVLAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQPKDDIVDRAKMEDTLKRRFFY---QAFAIYGSGLYDFGPVGCALKNNIIQTWRQFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKGNMPGYLRPETAQGI--LNFKRLLEFNQGKLPFAAAQIGNSFRNEI----SPRSGLIRVREFTMAEIEHFVDPSEKNTVLGYFIGRIYLYLTKVGISLRFRQHMENEMAHYACDCWDAESKTS-GEFTIETEGKTFQLTKDMI----NVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVREFSFPAVVAPFLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTD... 608
46 -11.9002g4c_A mol:protein length:474 DNA polymerase gamma subunit 2  ali model follow..  53..........................................................................................................................................................LEICQRRHFLQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVREQVFPVDALHHKPGPLLPGDSAFRLVSAETLRLENVLKTSGKLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTK-QIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSFSSSDCQDEEGRKGNKLYYNFP-------GKELIETLWNLGDHELLHMY-VSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENLKLHPCLAPIRGPTLELRQVCQGLFNELLENGISVETTLENGLIHLRSRDTTMKE 447
47 -11.9005c51_B mol:protein length:485 DNA polymerase subunit gamma-2, mitochondrial  ali model follow..  10  70..........................................................................................................................................................LEICQRRHFLQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVREQVFPVDALHHKPGPLLPGDSAFRLVSAETLRLENVLKTSGKLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTK-QIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSS-SDCQDEEGRKGNKLYYNFPWGKELIETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENLKLHPCLAPIRGPTLELRQVCQGLFNELLENGISVETTLENGLIHLRSRDTTMKE 464
48 -11.2003rac_A mol:protein length:373 Histidine-tRNA ligase  ali model follow..  13  32...................................................................................................................................................................................GYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLR-ARSPESSRDWIRLFDGGGDAVALPEMTPSIARMAAPRVAAGR---TPIRWCYCERVYRRTDPASLSWASG--KAAESTQVGIERIGEEASVDVDMD-VLRLLHEASAAAGVRHHRIVVSHARLVPRLLDALGISA........................................................................................................................... 203
49 -11.1005c53_B mol:protein length:903 Pol gamma B  ali model follow..  278......LLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENSFTRKKN------LHRKVLKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPGYLETMQSSLEQLY--------------------SKYDEMSILFTVLVTETTLE---NGLIHLRSRDTTMKEMLKDFLIKYISRSRVAVRACHKVCRCLLSGFGGRVDAGQPELLTERSPGDSAFRLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTK-QIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSS-SDCQDEEGRKGNKLYYNFPWGKELIETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENLKLHPCLAPIRGPTLELRQVCQGLFNELLENGISVYLETMQSSLEQLYSK..... 849
50 -11.1004ztu_B mol:protein length:472 DNA polymerase subunit gamma-2, mitochondrial  ali model follow..  10  24....................................................................................................................................AELEGNGEHPEAPGSGEGSEALLEICQRRHFLQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVREQVFPVDALHHKPGPLLPGDSAFRLVSAETLRLENVLKTSGKLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTK-QIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSS-SDCQDEEGRKGNKLYYNFPWGKELIETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENLKLHPCLAPIRGPTLELRQVCQGLFNELLENGISVETTLENGLIHLRSRDTTMKE 440
51 -10.9003hrk_A mol:protein length:456 Histidyl-tRNA synthetase  ali model follow..  18  32...................................................................................................................................................................................FPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKA--EEITEQMFNFITKGGHVALRPEMTPSLARLLLGKGRSLL---LPAKWYSIPQCWRYEAITRG-------RRREHYQWNMDIVGVKSVSAEV--ELVCAACWAMRSLGLSSKDVGIKVNSRK...................................................................................................................................... 185
52 -10.7001qe0_A mol:protein length:420 Histidine--tRNA ligase  ali model follow..  12  11...................................................................................................................................................................................ILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGDSTDVVQKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKG-------RYRQFNQFGVEAIGAENPSVDA--EVLAMVMHIYQSFGLKHLKLVI--NSVGDMASRKEYNEALVKHFEPVIHIKTAPRITDFLNEESKAYYEQVKAYLDDLGIPYTEDGFALSIERLLLALEEEGIELDIEENLDLFIVTMG--DQADRYAVKLLNHLRHNGIKADKDYLQRKIKGQMKQAD... 376
53 -10.7003net_A mol:protein length:465 Histidyl-tRNA synthetase  ali model follow..  18  21...................................................................................................................................................................................FLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKG--PNRQAEKDKSGDTGSERALKFDQTVPLAAYIARHLNDLT---FPFARYQMDVVFRGERAKDG-------RFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAVNIGDFVIRINNRKV....................................................................................................................................... 189
54 -10.5003hri_A mol:protein length:456 Histidyl-tRNA synthetase  ali model follow..  11  32...................................................................................................................................................................................FPPETMRLRKYLFDVFHSTARKFGFEEYDSPVLESEELYIRKA--EEITEQMFNFITKGGHVALRPEMTPSLARQLLAKGRSLL---LPAKWYSIPQCWRYEAITRG-------RRREHYQWNMDIIGVKSVSSEV--ELVCAACTAMQSLGLS-KILQTVVEQAGVSADKFAPVCVIVDKMEKLPREEVVAQLAAFEGFDRDGNFRALCGGGRYDNLLTTYGGFGFGDCVIVELLNEKKLLPELHHVVDDLVIPFD--ETMRPHALSILRRLRDAGRSADIVFDKKKVVQAFNYAD... 402
55 -10.4003od1_A mol:protein length:400 ATP phosphoribosyltransferase regulatory subunit  ali model follow..  16  19...................................................................................................................................................................................TLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVS--AILDQQLFKLLDQQGNTLVLPDMTAPIARLVASSLKDRA---YPLRLAYQSNVYRAQQNEGG-------KPAEFEQLGVELIGDGTASADG--EVIALMIAALKRAGLSEFKVAIGHVGYVNALLMDVVGN............................................................................................................................ 181
56 -10.4004g85_A mol:protein length:517 Histidine-tRNA ligase, cytoplasmic  ali model follow..  13  76...................................................................................................................................................................................YSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETL--MGKYGEDSKLIYDLKDQGGELSLRYDLTVPFARYLAMN------KLTNIKRYHIAKVYRRDNPAMTR---G--RYREFYQCDFDIAGNFDPMIPDAE-CLKIMCEILSSLQIGDFLVKVNDRRI....................................................................................................................................... 227
57 -10.4006FTT Entity 1(prereleased)  ali follow..  10  10...................................................................................................................................................................................VLFEDAHKQEVLRHQLTQQLITHGYQLVSPPMIEFTESLLS-GASEDLKRQTFKIIDQLTGRLMGIRADITPQIL---RIDAHHGGDGIARYCYAGDVIHTLPSGLF-------GSRTPLQLGAEIFGCESIAADI--ELIDVLFSMINSLDMS-AVLHVDLGHVT...................................................................................................................................... 161
58 -10.4005m8h_A mol:protein length:388 ATP phosphoribosyltransferase regulatory subunit  ali model follow..  10  10...................................................................................................................................................................................VLFEDAHKQEVLRHQLTQQLITHGYQLVSPPMIEFTESLLS-GASEDLKRQTFKIIDQLTGRLMGIRADITPQIL---RIDAHHGGDGIARYCYAGDVIHTLPSGLF-------GSRTPLQLGAEIFGCESIAADI--ELIDVLFSMINSLDMS-AVLHVDLGHVT...................................................................................................................................... 161
59 -10.3001z7m_A mol:protein length:344 ATP phosphoribosyltransferase regulatory subunit  ali model follow..  15  25...................................................................................................................................................................................MTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALNGKTFNQEKMFQFIKHEGQSITLRYDFTLPLV----RLYSQIKDSTSARYSYFGKIFRKEKRHKG-------RSTENYQIGIELFGESADKSEL--EILSLALQVIEQLGLNKTVFEI............................................................................................................................................ 173
60 -10.3001wu7_A mol:protein length:434 Histidyl-tRNA synthetase  ali model follow..  11  1...................................................................................................................................................................MYRLQIEKIRGFR---FYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKS--EELLQQTYSFVDKGGREVTLIPE---ATPSTVRMVTSRKDLQRPLRWYSFPKVWRYEEPQAG-------RYREHYQFNADIFGSDSPEADA--EVIALASSILDRLGLQ.................................................................................................................................................. 155
61 -10.2001g5h_A mol:protein length:454 MITOCHONDRIAL DNA POLYMERASE ACCESSORY SUBUNIT  ali model follow..  11  6....................................................................................................................................AGPADGTQQPDAPEHAVAREALVDLCRRRHFLQLSTAALLSGCHARF--PLGVELRKNLASQWWSSMVREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTP-SSVTRVGEKTEASLVWFTPTRTSSQWLDFWLRHRLLWWRKFAMSPSNFSS-ADCQDELGRKGSKLYYSFPWGKEPIETLWNLGDQELLHTYPGNVSTIQGRDGRKNVVPCVLSVSGDVDLGTLAYLYDSFQLAENLKLHPCLAPIKGPTVELRQVCQGLLNELLENGISVETTLENGLIQLRSRDTTMKE 422
62 -10.2005e3i_A mol:protein length:438 Histidine--tRNA ligase  ali model follow..  12  1...................................................................................................................................................................MAMSSIVAIKGFN---VLPTQTAAWRRLEQHLASLMDAYGYQQIRLPIVEQTGLFKRADATDIVEKEMYTFFDKGNPPESLTLRPEGTAGCVRALVEHNLLRGATPRVWYMGPMFRYEKPQKG-------RYRQFHQFGVETFGVATPDIDA--ELIMLTARLWKRMGVD-HMVQLELNTLGETDERT................................................................................................................................ 178
63 -10.1004g84_A mol:protein length:464 Histidine--tRNA ligase, cytoplasmic  ali model follow..  13  23...................................................................................................................................................................................YSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETL--MGKYGEDSKLIYDLKDQGGELSLRYDLTVPFARYLAMN------KLTNIKRYHIAKVYRRDNPAM---TRG--RYREFYQCDFDIAGNFDPMIPDAE-CLKIMCEILSSLQIGDFLVKVNDRRI....................................................................................................................................... 174
64 -10.0003p8t_A mol:protein length:294 AsnS-like asparaginyl-tRNA synthetase related protein  ali model follow..  10  15........................................................................................................................................................................................IDIQTKILDYMTKFFTDRGFKWLLPI-MLSPITDPLWPDPAGEGIRPAEVDVYGVRMRLTHSMI-----LHKQLAIAMGLE----KIFVLSPNIRLESRRKDDGRH----SYEFTQLDF------EIEGAKMKDVMRLIEELIYGL----KAEEWTGREF--PRARHFKVYDYKDILEEFGEVSS-GGEREWEYEKIVAKIRAAGLKEDSFRPLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPR.................................................. 286
65 -9.9804rdx_A mol:protein length:423 Histidine--tRNA ligase  ali model follow..  16  14...................................................................................................................................................................................LFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEGVGAATDIVRKEMFTFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKG-------RYRQFHQVNYEALGSENPILDA--EAVVLLYECLKELGLRRLKVKLSS.......................................................................................................................................... 167
66 -9.8104e51_A mol:protein length:467 Histidine--tRNA ligase  ali model follow..  16  22....................................................................................................................................................................KLEKLTGVKGMN---ILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGEVTDIVEKEMYSFVDALNGENLTLRPENT-AAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRG-------RYRQFHQVGVEALGFAGPDADA--EIVMMCQRLWEDLGLTGIKLEINS.......................................................................................................................................... 188
67 -9.7502el9_A mol:protein length:431 Histidyl-tRNA synthetase  ali model follow..  11  21...................................................................................................................................................................................YLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGT-AGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKG-------RYRQFHQLGCEVFGLQGPDIDA--ELIMLTARWWRALGISEHV-TLELNSIGSLEARANYRDALVAFLEQHKELNDAPALGDYLDEESREHFAGLCKLLESAGIAYTVNGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMTNHGGGNFKKQFARAD... 384
68 -9.6501nnh_A mol:protein length:294 asparaginyl-tRNA synthetase-related peptide  ali model follow..  10  15........................................................................................................................................................................................LDIQTKILEYMTDFFVKEGFKWLLPV-IISPITDPLWPDPAGEGMEPAEVEIYGVKMRLTHSMI-----LHKQLAIAMGLK----KIFVLSPNIRLESRQKDDGRH----AYEFTQLDF------EVERAKMEDIMRLIERLVYGL-FEYEVLEEFGSDEKASQEMEEPFWI-IPRE-GYGEVAS-GGEREWEYEKIVAKIRKAGLNEDSFRPLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPR.................................................. 286
69 -9.5403ikl_A mol:protein length:459 DNA polymerase subunit gamma-2, mitochondrial  ali model follow..  10  103.......................................................................................................................................................................................GVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPG--------------DSAFRGGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDT-KQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSS-SDCQDEEGRKGNKLYYNFPWGKELIETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENLKLHPCLAPIRGPTLELRQVCQGLFNELLENGISVETTLENGLIHLRSRDTTMKE 432
70 -9.4101usy_A mol:protein length:275 ATP PHOSPHORIBOSYLTRANSFERASE REGULATORY SUBUNIT  ali model follow..  11  3.........................................................................................................................................................................................FLDFEKVFSFYSKATKKGFSPFFVPALEKAEEP-----------AGNFFLDRKGNLFSIREDFTKTVL----NHRKRYSPDSQIKVWYADFVYRYSGS----------DLVAEYQLGLEKVPRNSLDDSL--EVLEIIVESASEFFEGPVIVEIGHTGVYEDLLKEIPKD............................................................................................................................ 145

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.