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Query: 4joi_A mol:protein length:166 CST complex subunit STN1, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst LDPVFLAFAKLYIRDILDMKESRQVPGVFLYNGHPIKQVDVLGTVIGVRERDAFYSYGVDDSTGVINCICWKKLNTESVSAAPSAARELSLTSQLKKLQETIEQKTKIEIGDTIRVRGSIRTYREEREIHATTYYKVDDPVWNIQIARMLELPTIYRKVYDQPFHSLast
1 -86.4004joi_A mol:protein length:166 CST complex subunit STN1  ali model  100  1LDPVFLAFAKLYIRDILDMKESRQVPGVFLYNGHPIKQVDVLGTVIGVRERDAFYSYGVDDSTGVINCICWKKLNTESVSAAPSAARELSLTSQLKKLQETIEQKTKIEIGDTIRVRGSIRTYREEREIHATTYYKVDDPVWNIQIARMLELPTIYRKVYDQPFHS 166
2 -59.0003kf6_A mol:protein length:159 Protein stn1  ali model follow..  17  11QFPTLSRWNPMFISDVHKISFHPHQRYIGFWMGFPIRWIQIVGYIAAIDIYEGKHVLTVDDCSGMVLRVVFIIQDDFSMSKRA----------------------ISMSPGNVVCVFGKINSFRSEVELIAQSFEELRDP--NDEWKAWQKRMRYKKNLTKKNHHS 155
3 -57.1003kf8_A mol:protein length:220 Protein stn1  ali model follow..  12  42QAPTFDKTIPLFISDINNSPNLYGLRHVVLVNNYPVNQINIFGKIVYEQYKESYVILVISDFIGIDSKIRVRLSQEQFKEVG--------------------LTLDKKNYGKIVELEGEIYNWYDSINVSKKPDRELKVSGLHFEFEQWKKRMEFRKNNLVEPWV. 212
4 -53.6004gnx_B mol:protein length:136 Putative uncharacterized protein  ali model follow..  21  3.KAGNNTLRPVTIRQILNAEQP-HPDAEFILDGAELGQLTFVAVVRNISRNATNVAYSVEDGTGQIEVRQWLDSSSDDSSKA-----------------------SEIRNNVYVRVLGTLKSFQNRRSISSGHMRPVIDY--NEVMFHRLEAVHAHLQVTR..... 136
5 -47.9002pi2_A mol:protein length:270 Replication protein A 32 kDa subunit  ali model follow..  17  40.RARAQHIVPCTISQLLSATL---VDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSEN-----------------------TVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLED--MNEFTTHILEVINAHMVLSKAN... 173
6 -40.3003nbh_B mol:protein length:147 RecQ-mediated genome instability protein 2  ali model follow..  12  20.....SPPLKVLAEQLRRDAEGGPGRAAAGRGPLDLAAVWMQGRVVMADRGE----ARLRDPSGDFSVRGLERVPRGR---------------------------PCLVPGKYVMVMGVVQACSPEPCLQAVKMTDLSD-NPIHESMWELEVEDLHRNI....... 146
7 -40.3003mxn_B mol:protein length:150 RecQ-mediated genome instability protein 2  ali model follow..  12  21...PRSPPLKVLAEQLRRDAEGGPGRAAAGRGPLDLAAVWMQGRVVMADRGE----ARLRDPSGDFSVRGLERVPRGR---------------------------PCLVPGKYVMVMGVVQACSPEPCLQAVKMTDLSD-NPIHESMWELEVEDLHRNI....... 149
8 -18.4001nnx_A mol:protein length:109 Protein ygiW  ali model follow..  18  26..........TTVESAKSLRDD--------------TWVTLRGNIVERISDDL---YVFKDASGTINVDI----------------------------DHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKVN............................ 108
9 -15.3004gla_C mol:protein length:109 OBody NL8  ali model follow..  12  21....................................TEVVVAGWVASLGDYGRVKIVKVSDREGGAAVPVYLEAGKTP--------------------DHLFKVFAELSREDVVVIKGIVEA-GRGVEIFPSEIWILNKAKA........................ 109
10 -14.6003e0e_A mol:protein length:97 Replication protein A  ali model follow..  18  12....................................LSGTINAEVVTAYPKKEFKSLFLKDDTGSIRGTLWNELADFE-----------------------------VKKGDIAEVSGYVKQGYSGLEISVDNIGIIE............................ 94
11 -14.6002k5v_A mol:protein length:104 Replication protein A  ali model follow..  18  12....................................LSGTINAEVVAAYPKKEFKSLFLKDDTGSIRGTLWNELADFE-----------------------------VKKGDIAEVSGYVKQGYSGLEISVDNIGIIE............................ 94
12 -14.4004glv_B mol:protein length:107 OBody AM3L09  ali model follow..  13  19....................................SEVVVAGWVAHLGDYGRVKIVKVSDREGGAAVPVYLERGKTP--------------------DHLFKVFAELSREDVVVIKGIVEATTVTREIFPSEIWILNKA.......................... 107
13 -14.1002kbn_A mol:protein length:109 Conserved protein  ali model follow..  16  16....................................QWANLKAKVIQLWENTHEQVGLLGDETGIIKFTIWKNAELPL-----------------------------LEQGESYLLRSVVGEYNDRFQVQVNKNSSIEKLSEPIEV.................... 100
14 -14.0004gn4_B mol:protein length:108 OBody AM2EP06  ali model follow..  12  20....................................SEVVVAGWVAHLGDYGRVKIVKVSDREGGAAVPVYLERGKTP--------------------DHLFKVFAELSREDVVVIKGIVEASEQYGEIFPSEIWILNKA.......................... 108
15 -14.0004gn5_A mol:protein length:113 OBody AM3L15  ali model follow..  12  19....................................SEVVVAGWVAHLGDYGRVKIVKVSDREGGAAVPVYLERGKTP--------------------DHLFKVFAELSREDVVVIKGIVEA-DTGVEIFPSEIWILNKAK......................... 108
16 -14.0004jbm_A mol:protein length:193 Interferon-inducible protein AIM2  ali model follow..  17  112......................................VNGLFKVQKITEEKDRVLYGIHDKTGTMEVLVLGNPSKTK-----------------------------CEEGDKIRLTFEVSKNGVKIQLKSSFFKVIKAAKPKTD..................... 193
17 -13.5003dm3_A mol:protein length:105 Replication factor A  ali model follow..  23  15....................................MTATFEGEVISALPIKEFKRFIVRDETGSIRVTLWDNLTDID-----------------------------VGRGDYVRVRGIREGYYGGLECTANYVEILK............................ 98
18 -13.1004gn3_B mol:protein length:113 OBody AM1L10  ali model follow..  12  23....................................TEVVVAGWVASLGDYGRVKIVKVSDREGGAAVSVYLEYGKTP--------------------DHLFKVFAELSREDVVVIKGIVEAMHNGVEIFPSEIWILNKAK......................... 113
19 -13.1004jbj_A mol:protein length:198 Interferon-activable protein 202  ali model follow..  13  124....................................TLIYGVFAVEKKKVNDKSITFKIKDNEDNIKVVWDKEQHNIN-----------------------------YEKGDKLQLFSHLRKGNGKPILHSGNHSFIK............................ 197
20 -13.0003rn2_A mol:protein length:208 Interferon-inducible protein AIM2  ali model follow..  18  125......................................VNGLFVVQKVTEKKKNILFDLSDNTGKMEVLGVRNEDTMK-----------------------------CKEGDKVRLTFTLSKNGEKLQLTSGVHSTIK............................ 196
21 -12.9004l5t_A mol:protein length:203 Interferon-activable protein 202  ali model follow..  26  126......................................VDGEFKVYRKSSGNNCICYGIWDDTGAMKVVVSGQLTSVN-----------------------------CEIGNTIRLVCELTSNADEWFLRATRYSYME............................ 197
22 -12.8005gro_A mol:protein length:115 Aspartate--tRNA(Asp/Asn) ligase  ali model follow..  14  21....................................KIVKVAGWCNTYRDHGGVVFIDLRDKSGLVQLVC-------------------------DPSSKAYEKALEVRSEFVLVAKGKVRL-TGKIEIVLEELIIENKS.......................... 109
23 -12.6005d8e_A mol:protein length:115 SOSS complex subunit B1  ali model follow..  18  15....................................KNLNLIFIVLETGRVTKTRTCKVADKTGSINISVWDDV------------------------------GNLIQPGDIIRMTGYASVFKGCLTLYTGRGGDLQ............................ 93
24 -12.6002k75_A mol:protein length:106 uncharacterized protein Ta0387  ali model follow..  15  14....................................PYVSVIGKITGIHKKESVYQGYIEDDTARIRISSFGKQ---------------------------------LQDSDVVRIDARVAQFNGYLSLSVGDSSRIESVNVNIPL.................... 99
25 -12.3001o7i_A mol:protein length:119 SINGLE STRANDED DNA BINDING PROTEIN  ali model follow..  17  13....................................ESVNVTVRVLEASEARQISEAIVGDETGRVKLTLWGKH------------------------------AGSIKEGQVVKIEAWTTAFKGQVQLNAGSKTKIA............................ 94
26 -12.1003k81_C mol:protein length:164 MP18 RNA editing complex protein  ali model follow..  12  2...............LALTSRRLLLQQTFMRCCKSVNSVTLVGVVHDIQSGFV-------YEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNGRLRL-PSCNKHFYFPYIQVQPPHGQVAVI................... 130
27 -12.1002mna_A mol:protein length:117 Single-stranded DNA binding protein (SSB)  ali model follow..  17  13....................................ESVNVTVRVLEASEARQISEAIVGDETGRVKLTLWGKH------------------------------AGSIKEGQVVKIEAWTTAFKGQVQLNAGSKTKIA............................ 94
28 -11.9004lnq_A mol:protein length:197 Interferon-activable protein 202  ali model follow..  13  120....................................TLIYGVFAVEKKKVNDKSITFKIKDNEDNIKVVWDKEQHNIN-----------------------------YEKGDKLQLFSHLRKGNGKPILHSGNHSFIK............................ 193
29 -11.7004l5q_A mol:protein length:199 Interferon-activable protein 202  ali model follow..  13  124....................................TLIYGVFAVEKKKVNDKSITFKIKDNEDNIKVVWDKEQHNIN-----------------------------YEKGDKLQLFSHLRKGNGKPILHSGNHSFIK............................ 197
30 -11.6001wjj_A mol:protein length:145 hypothetical protein F20O9.120  ali model follow..  17..........VKVEQLKP-----------------TTGHTLTVKVIEANQPSRIVECLIGDETGCILFTARNDQ------------------------------VDLMKPGATVILRSRIDMFKGTMRLGVDKWGRIE............................ 118
31 -11.6002oq0_A mol:protein length:206 Gamma-interferon-inducible protein Ifi-16  ali model follow..  12  127......................................NIVYGVFMLHKVNQKTTIYEIQDDRGKMDVVGTGQCHNIP-----------------------------CEEGDKLQLFCRLRKKNQMSKLISEMHSFIQ............................ 200
32 -11.4004owt_B mol:protein length:211 SOSS complex subunit B1  ali model follow..  18  5..........TFVKDIKP-----------------LKNLNLIFIVLETGRVTKTRTCKVADKTGSINISVWDDV------------------------------GNLIQPGDIIRLTGYASVFKGCLTLYTGRGGDLQKIG......................... 96
33 -11.3002k50_A mol:protein length:115 Replication factor A related protein  ali model follow..  20  17....................................AETPVTGRVMKISSPRTFTTVIIADDTGELRAVFW---------------------------TENIKLLKKFREGDVIRIKD--GGFGGRKEAHLMPRSTVE............................ 103
34 -11.3003k7u_C mol:protein length:148 MP18 RNA editing complex protein  ali model follow..  13  6...................................VNSVTLVGVVHDIQSGFV-------YEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNGRLRL-PSCNKHFYFPYIQVQPPHGQVAVI................... 114
35 -11.3004joi_D mol:protein length:122 CST complex subunit TEN1  ali model follow..  1MLPKPGTY--YLPWEVSAGQVPDG------------STLRTFGRLCLYDMIQSRVTLMAQHGSDQHQVLV----------------------------CTKLVEPFHAQVGSLYIVLGELQHQQDRGVVKARVLTCVEGMNLPL----LEQAIREQRLYKQE.... 117
36 -11.2003f1z_A mol:protein length:133 putative nucleic acid-binding lipoprotein  ali model follow..  12  18.DDAVASMQTYSVAQFLQPFTLNPAKASSDYLG---KWVKVRGVIVDIRRKS--------GIAGSYYFIV----------TMRDEQNKTDKRLTFNFGSHNSADVEALSNGSVATIVGQVHQVQDSTIPTLQNPKVVK............................ 133
37 -11.1003stb_C mol:protein length:148 RNA-editing complex protein MP42  ali model follow..  12  10.VHGQETILPQAPQYHLDVAPNAPEEGEVAAHWRCVNHCVMLGVVQNIQEG-------FVFEDKVLQFTLITDFEGPSPGDPDKD-----HTVRVFDSDYSSRVKEQLRDGEWFLVTGRLRM-GSMRKYYHYPVIQVHPGCGSVLKV................... 148
38 -10.8003fhw_A mol:protein length:115 Primosomal replication protein n  ali model follow..  10  1...................................MNTLELSARVLECGAMR-----HTPAGLPALELLL----VHESEVVEAGHPRRVELTISAVALGDLALLLADTPLGTEMQVQGFLAP-SVKVKLHLQQARRIAGSMGRD...................... 103
39 -10.6001v1q_A mol:protein length:134 PRIMOSOMAL REPLICATION PROTEIN N  ali model follow..  14  19...................................TNRLVLSGTVCRAPLRK-----VSPSGIPHCQFVL---EHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISC-LSKMVLHAEQIELIDSVDKLAA..................... 125
40 -10.4001x54_A mol:protein length:434 Asparaginyl-tRNA synthetase  ali model follow..  18  17....................................KKVRLAGWVYTNMRVGKKIFLWIRDSTGIVQAVVAKNVVGEET-----------------------EKAKKLGRESSVIVEGIVKA-PGGAEVHVEKLEVIQAVS......................... 102
41 -10.3004apv_A mol:protein length:112 PRIMOSOMAL REPLICATION PROTEIN N  ali model follow..  12  2...................................TNRLELSGIICRTPLRK-----VSPSGIPHCQFVL---EHRSVQEEAGFHRQAWCQMPVIISGHENQAITHSITVGSAVTVRGFISC-LSKMVLHAEQIELIDSGDLE....................... 106
42 -10.2002pi2_E mol:protein length:142 Replication protein A 14 kDa subunit  ali model follow..  13  34....................................KPVCFVGRLEKIHPTGKMFILSDGEG-KNGTIEL--------------------------------MEPLDEEISGIVEVVGRVT---AKATILCTSYVQFKEDSHPFDLGLYNEAVKIIHDF....... 120
43 -10.1002pnh_A mol:protein length:107 Primosomal replication protein n  ali model follow..  15  5...................................TNRLVLSGTVCRAPLRK-----VSPSGIPHCQFVL---EHRSVQEAAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISC-LSKMVLHAEQIELIDSGD......................... 107
44 -10.0004j15_A mol:protein length:521 Aspartate--tRNA ligase, cytoplasmic  ali model follow..  11  72....................................EVVWVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASK---------------------QMVKFAANINKESIVDVEGVVRKVNQDVELHVQKIYVISLAE......................... 163
45 -10.0005wqv_A mol:protein length:104 Primosomal replication protein N  ali model follow..  14  2...................................TNRLVLSGTVCRAPLRK-----VSPSGIPHCQFVL---EHRSVQEEAGFHRQAWCQMPVIVAGHENQAITHSITVGSRITVQGFISC-LSKMVLHAEQIELIDSGD......................... 104
46 -9.9805xix_A mol:protein length:472 Asparagine--tRNA ligase, cytoplasmic  ali model follow..  10  44....................................QRVKVFGWVHRLRRQGKNLMFVLRDGTGYLQCVL-------------------------ADELCQCYNGVLLSTESSVAVYGMLNLTPKGKELSCDFWELIGNEESDVDVQLNNRHMMIRGENMSKILK. 165
47 -9.8101b8a_A mol:protein length:438 PROTEIN (ASPARTYL-TRNA SYNTHETASE)  ali model follow..  17  17....................................QKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPEL-----------------------KLIPKLRSEDVVAVEGVVNFTPKAKEILPEKIVVLNRAE......................... 102
48 -9.7904fdb_A mol:protein length:101 Probable primosomal replication protein n  ali model follow..  2...................................INRLQLVATLVEREVMR-----YTPAGVPIVNCLL----SYSGQAMEAQTARQVEFSIEALGAGKMASVLDRIAPGTVLDCVGFLARKHRSSKALVFHISGLE............................ 95
49 -9.7703en2_A mol:protein length:101 Probable primosomal replication protein n  ali model follow..  10  2...................................INRLQLVATLVEREVMR-----YTPAGVPIVNCLL----SYSGQAMEAQAARQVEFSIEALGAGKMASVLDRIAPGTVLECVGFLARKHRSSKALVFHISGLE............................ 95
50 -9.5301x3e_A mol:protein length:165 Single-strand binding protein  ali model follow..  11  5....................................TTITVVGNLTADPELR-----FTPSGAAVANFTVASTPRMFDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGSRVIVTGRLKQ-RTVVEVEVDEI................................ 106
51 -9.5201wyd_A mol:protein length:429 hypothetical aspartyl-tRNA synthetase  ali model follow..  19  17....................................KEVIWAGWVHLLRDLGGKKFIILRDKTGLGQVVV-------------------------DKNSSAFGISQELTQESVIQVRGIVKA-PRGIELHAEEITLLSKAK......................... 99
52 -9.4901asy_A mol:protein length:490 ASPARTYL-tRNA SYNTHETASE  ali model follow..  14  40....................................KEVLFRARVHNTRQQGATLAFTLRQQASLIQGLVKANKEGTISKNM--------------------KWAGSLNLESIVLVRGIVKKVDQNLEIHITKIYTISETP......................... 134
53 -9.4901ue1_A mol:protein length:164 Single-strand binding protein  ali model follow..  10  5....................................TTITIVGNLTADPELR-----FTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVSGRLKQ-RTVIEVEVDEI................................ 106
54 -9.4103afp_A mol:protein length:168 Single-stranded DNA-binding protein  ali model follow..  10  5....................................TTITIVGNLTADPELR-----FTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVTGRLKQ-RTVVEVEVDEI................................ 106
55 -9.3803m4p_A mol:protein length:456 Asparaginyl-tRNA synthetase, putative  ali model follow..  13  31....................................KLVTFKGWAYHIRKARKTLIFELRDGSGYCQCVI------------------------FGKELCEPEKVKLLTRECSLEITGRLNAYAGKNEMQVTEWKVIGESP......................... 123
56 -9.3402xti_A mol:protein length:437 ASPARAGINYL-TRNA SYNTHETASE, CYTOPLASMIC, PUTATIVE  ali model follow..  15  1........TGVKIRDLVKHRN---------------ERVCIKGWIHRMRRQGKSLMFILRDGTGFLQVLL-------------------------MDKLCQTYDALTVNTECTVEIYGAIKEVPEGKELIADFWKIIGNAP......................... 100
57 -9.2903i7f_A mol:protein length:548 Aspartyl-tRNA synthetase  ali model follow..  16  63....................................KTVTIRARVQAVRGKGNMVFLFLRKGIYTCQALVMKSETISK---------------------EFVQFCQKISAESICDITGIVKAVEQDVEIHVTSIAVVSLAE......................... 154
58 -9.1901n9w_A mol:protein length:422 aspartyl-tRNA synthetase 2  ali model follow..  16  1........MRVLVRDLKAHVG---------------QEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVT--------------------------------GGLKLPLPESALRVRGLVVE-PGGLEVQAKEVEVLSPAL......................... 89
59 -9.0104dk3_C mol:protein length:105 RNA-editing complex protein MP81  ali model follow..  15  1.................................RAGSNALMIGRIADVQHGFL-------GAMTVTQYVL-------EVDGGASGEKEFIVIRCMGDNFPASLLKDQVKLGSRVLVQGTLRM-DVSKRLHAYPFIQVVPPL......................... 98

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.