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Query: 4k86_A mol:protein length:535 Proline--tRNA ligase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSSSSGLVPRGSHMASGAGEGQGPKKQTRLGLEAKKEENLADWYSQVITKSEMIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEAETKLQAILEDIQVTLFTRASEDLKTHMVVANTMEDFQKILDSGKIVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELQPGAKCVCGKNPAKYYTLFGRSYLast
1 -175.0004k86_A mol:protein length:535 Proline--tRNA ligase  ali model  100  1MGSSSSGLVPRGSHMASGAGEGQGPKKQTRLGLEAKKEENLADWYSQVITKSEMIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEAETKLQAILEDIQVTLFTRASEDLKTHMVVANTMEDFQKILDSGKIVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELQPGAKCVCGKNPAKYYTLFGRSY 529
2 -163.0004hvc_A mol:protein length:519 Bifunctional glutamate/proline--tRNA ligase  ali model follow..  99  2.................GSGEGQGPKKQTRLGLEAKKEENLADWYSQVITKSEMIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEAETKLQAILEDIQVTLFTRASEDLKTHMVVANTMEDFQKILDSGKIVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELQPGAKCVCGKNPAKYYTLFGRSY 513
3 -151.0004ncx_A mol:protein length:506 Proline--tRNA ligase  ali model follow..  48  1.........................MASNILGITSKKIENFSDWYTQVIVKSELIEYYDISGCYILRPAAYYIWECVQAFFNKEIKKLNVENSYFPLFVTKNLEKEKNHIEGFSPEVAWVTKY-GDSNLPEEIAIRPTSETIMYSVFPKWIRSYRDLPLKLNQWNTVVRWEFKQPTPFIRTREFLWQEGHTAHKNEEEAVKLVFDILDLYRRWYEEYLAVPIIKGIKSEGEKFGGANFTSTAEAFISENGRAIQAATSHYLGTNFAKMFKIEFEDENEVKQ--YVHQTSWGCTTRSIGIMIMTHGDDKGLVLPPNVSKYKVVIVPIFYKTTD----ENAIHSYCKDIEKILKNAQINCVYDDRASYSPGYKFNHWELRGIPIRIEVGPKDLQNNSCVIVRRDNNEKCNVKKESVLLETQQMLVDIHKNLFLKAKKKLDDSIVQVTSFSEVMNALNKKKMVLAPWCEDIATEEEIKKETQRLSLNSETTLSGAMKPLCIPLDQP-PMPPNMKCFWSGKPAKRWCLFGRSY 500
4 -150.0005xif_A mol:protein length:500 Prolyl-tRNA synthetase (ProRS)  ali model follow..  51  2..............................AMVTAKKDENFSEWYTQAIVRSEMIEYYDISGCYIMRPWAFHIWEKVQRFFDDEIKKMGVENSYFPMFVSRHLEKEKDHVEGFSPEVAWVTHY-GDSPLPEKIAIRPTSETIMYPAYAKWIRSHRDLPLKLNQWCSVVRWEFKQPTPFLRTREFLWQEGHTAHATEEEAWELVLDILELYRRWYEECLAVPVIKGEKSEGEKFAGGKKTTTVEAFIPENGRGIQAATSHLLGTNFAKMFEIEFEDEEGHKRLVHQTS--WGCTTRSLGVMIMTHGDDKGLVIPPRVASVQVVIIPILFKDEN----TGEILGKCRELKTMLEKADIRVRIDDRSNYTPGWKYNHWEVKGVPLRLELGPKDLAKGTARVVRRDTGEAYQISWADLAPKLLELMEGIQRSLFEKAKARLHEGIEKISTFDEVMPALNRKHLVLAPWCEDPESEEQIKKETQKEAGDSEQVMTGAMKTLCIPFDQP-PMPEGTKCFYTGKPAKRWTLWGRSY 500
5 -149.0005xip_A mol:protein length:498 Prolyl-tRNA synthetase, putative  ali model follow..  52  1............................GAMGVTAKKSTNFADWYTQVIVRGELVEYYDISGCYIIRPWAYRIWEAVQKFFDDGIKRLGVENCYFPMFVSQALEKEKDHVEGFKPEVAWVTHYGDSE-LPEKVAIRPTSETIMYPAYAKWIRSHRDLPLKLNQWNNVVRWEFKQPTPFLRTREFLWQEGHTAHATEEEAYTLVLEILELYRQWYEDYLAVPVIKGEKSENEKFAGGKKTTTIEGIIPDTGRGIQAATSHLLGQNFSRMFSIEFEDEKGAKQ--LVHQTSWGCTTRSLGVMIMTHGDDKGLVLPPRVVAVQAVIIPIIFKETG----GMEIVAKCRELERLLNAAGVRVKVDDRTNYTPGWKFNDWELKGVPLRLEIGPRDVESCQTRVVRRDTSEARNVPWAEAASTIPAMLETMQKDLFNKAKAKFEASIEQITTFDEVMPALNRRHVVLAPWCEDPETETQIKRETQRLSRENADGMTGAMKPLCIPFDQP-PMPEGTRCFFTGRPAKRWCLFGRSY 498
6 -147.0005f9y_A mol:protein length:511 Aminoacyl-tRNA synthetase  ali model follow..  51  3.......................SKENESLLGITADKITSFADWYSQVIVKSEMIEYYDISGCYILRPWSYFIWETIQSVFDQKIKQHDVQNAYFPIFVTQKLETEKDHVEGFSPEVA-WVTKSGKSDLAEPIAIRPTSETIMYPYFAKWIRSHRDLPLKINQWTSIVRWEFKHPTPFIRTREFLWQEGHTAHSTRKEALEMVDIILNEYASIYEDLLATPVVKGTKSENEKFPGGDITKSIEGFIPEIGRAVQAATSHLLGQNFSKMFGVEFEDEKGNKE--YAHQTSWGLTTRAIGVMIMTHGDNKGLVLPPKVAPVQVIIIPIIFKTVI----TEEQKKICNEVECILKKAGVRVKIDDRSNYTPGWKYNHWEVKGVCLRFEVGPRDIEKRSVRVVVRDNMEKMDIPISELESKIPKLLEEFQNRLLFKAKQRQNESIIRVDTFDKVMDTLNQKKMVIAPWCEDVSCEEEIKKETARLSLDNNQSMTGAMKSLCIPNDQIFKEEGKTKCFFCDKLAKKFTLFGRSY 505
7 -140.0005xil_A mol:protein length:512 Putative prolyl-tRNA synthetase  ali model follow..  56  1............................GAMGIAAKREENFSAWYIDVITKAEMIEYYDVSGCYIIRPWAYYVWKCVQRFLGGKIEKLGVEDCYFPMFVSRSCLEREKDHIEGFAPEVAWVTRAGDTELEQPVAVRPTSETVMYPYYAKWIRSHRDLPVRLNMWNNVIRWEFSHPTPFIRTREFLWQEGHCAWAKAEECAKEVLEILECYASVYEQLLAVPVVRGRKTEKEKFAGGDYTTTVETFIEAVGRGCQGATSHNLGQNFGKMFDIRFQDPENNEQTLIPWQNSWGLSTRVIGVMIMVHGDNRGMVMPPRVASTQVIIIPVGITKDTTEEARQELLASCWRLESELCEGGVRARCDLRDNYSPGWRFNHWEVKGVPLRVELGPRELAERSLAVAVRHSGARHSVAWDAQTPAAAALLEDVHAQMYARAKETMETHRVRVTEWTEFVPTLNRKCLILAPWCGAMECENQVKKDSAEESREDARAPSMGAKTLCIPFEQPEEPAEGHECKGCTKPATTWVLFGRSY 512
8 -137.0003ial_A mol:protein length:518 Prolyl-tRNA synthetase  ali model follow..  27  2........................AMGGDVTFSLTKTRDTFADWFDAIMDAAELVDRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDTIFSDELCFKGQKLRRVCWDRFPGA-DYSEVSDVVMPCGRVLQTAGIHNLGQRFSSTFDILYANKANESVHPYLTCA--GISTRVLACALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLSKLGLRVSIDDDFSKSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQVIPITEVMKVSSDELDAYKARLKEKAFAFHNSMVTNCKSFDEIVACIENKGLARFPFYTTEADGEVWDKKLKDA---------CSAEIRGHNPDENV--LPGEVCALSGKPAVCYMYCAKSY 512
9 -127.0001nj1_A mol:protein length:501 Proline-tRNA Synthetase  ali model follow..  31  1.......MGSSSSGLVPRGSHMQKPIKKDPNRYHGEKMTEFSEWFHNILEEAEIIDQYPVKGMHVWMPHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDLAKEAIHVKGFEDEVY-WVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGI-PYLITRRPPWDKFPGSEYTVAFDTLM-PDGKTLQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQTCY--GLSDRVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKKA-----AEEVMEACRELRSRLEAAGFRVHLDDR-DIRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETLRELMKDILENLRTRAWERMESEIREAETLEEASRIVDEKRIISFMWCGEEECGMDVEEKV-------------RVDILGIQEEGS------GTCINCGREAPYRAYLARTY 495
10 -127.0001h4q_A mol:protein length:477 PROLYL-TRNA SYNTHETASE  ali model follow..  41  1...........................MAKEKGLTPQSQDFSEWYLEVIQKAELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSLRKEAEHVEGFSPELA-VVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTR-PFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKDG-KALQAGTSHYLGENFARAFDIKFQDRDLQVK--YVHTTSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDES-----RERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRLGGKE-TLPLAALPEALPGKLDAFHEELYRRALAFREDHTRKVDTYEAFKEAVQEG-FALAFHCGDKACERLIQEET-------------TATTRCVPFEAE---PEEGFCVRCGRPSAKRVVFAKAY 477
11 -122.0001nj8_A mol:protein length:459 Proline-tRNA Synthetase  ali model follow..  33  1..................................GSHMLEFSEWYSDILEKAEIYDVYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMFKEAHTAHSTKEEAENQVKEAISIYKKFFDTLGIPYLISKRPEWDKF--PGAEYTMAFDTIFPDGRTMQIATVHNLGQNFSKTFEIIFETPTGDKDYAYQTCY--GISDRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGK------EDIVMEKAKEIYEKLKGKFRVHIDDR-DIRPGRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEKTLNNIMENIKNRAWEKFENFITILEDIDEIKNILEKRGVILVPFKEEIYNEELEEKV--------------EATILGETEYK------GNKYIAI----------AKTY 459
12 -94.6002j3l_A mol:protein length:572 PROLYL-TRNA SYNTHETASE  ali model follow..  17  1.........................MKQSKMLIPTLRENDAEVLSHQILLRAGYIR-QVAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRN-----DRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERCGLEFRAIIGDGGAMGGKDSKEFMAISEIGEDTIKGIEIGHIFKLGTRYSDAMGATVLDENGREKSVIMGCYGIGVS-RLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKD-------EYQTKLSQEVEAMMTEAGYEVLVDDR-NERAGVKFADADLIGCPIRITVGKKAVD-GVVEVKIKRTGEMLEVRKEELESTLSILMNTTSEV..................................................................................................... 571
13 -86.9002i4l_A mol:protein length:458 Proline-tRNA ligase  ali model follow..  17  13.......................SHMRLSRFFLPILKEKEAEIVSHRLMLRAGMLR-QEAAGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRH-----KRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVRGIEVGQIFYFGTKYSDSMKANVTGPDGTDAPIHGGSYGVGVS-RLLGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGD-------AATDAACDQLYRELSAKGVDVLYDDT-DQRAGAKFATADLIGIPWQIHVGPRGLAEGKVELKRRSDGARENLALADVVARLT.............................................................................................................. 452
14 -84.6005ucm_A mol:protein length:579 Proline--tRNA ligase  ali model follow..  17  3.........................MRTSQYLLSTLKEADAVVISHQLLLRAGMIR-RLASGLYTWLPMGLRVLRKVETIVREEMNAAGALEVLMPAVQPAELWQESGRWEQYGPELLRLKDRHE-----REFCVGPTHEEVITDLARNELNSYKQLPINFYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHLSQDSLQQTYDGMYQAYSKIFSRLGLDFRPVQADNGSIGGSGSHEFHVLANSGEDDIRGIEVGHIFQLGTKYSEAMKLSVLSEQGKPVNLIMGCYGIGVS-RVVAAAIEQNHDERGILWPSALAPFQIALVPLKYET-------ESVKQATDKLYAELTAAGFEVLLDDRDKKSPGVKFADMELIGIPHRIVISDRGLSEGVLEYKGRRDSESQNLPIGELMSFITEKLSR......................................................................................................... 573
15 -72.3004p3n_A mol:protein length:415 Threonine--tRNA ligase, cytoplasmic  ali model follow..  16  2.....................................GSSSSGDHRKIGRDQELYFFHESPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSF------EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGATGLTRVRRFQQDDAHIFC-AMEQIEDEIKGCLDFLRTVYSVFGFSFKLNGEKWELNSGDGAFYGPKIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTYVSHDGDDRPVIVHRAILGSVERMIAILTENYGGK----WPFWLSPRQVMVVPV----------GPTCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETIERLQQLKEFRSKQAEEE................................................................................................. 408
16 -70.6004hwt_A mol:protein length:413 Threonine--tRNA ligase, cytoplasmic  ali model follow..  16  1........................................MARDHRKIGRDQELYFFHESPGSCFFLPKGAYIYNALIEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSF------EVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRLADFGVLHRNELSGATGLTRVRRFQQDDAHIFC-AMEQIEDEIKGCLDFLRTVYSVFGFSFKLFGEKWELNSGDGAFYGPKIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTYVSHDGDDRPVIVHRAILGSVERMIAILTENYGGK----WPFWLSPRQVMVVPV----------GPTCDEYAQKVRQQFHDAKFMADIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETIERLQQLKEFRSKQAEEEFLE.............................................................................................. 407
17 -68.5003a31_A mol:protein length:471 Probable threonyl-tRNA synthetase 1  ali model follow..  13  1..............MASGQDKTHIDYAYEL-------DITVKPDSRVPVFNREFATFT-GAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLF------DIEGHEFAVKPMNCPYHILLFLNEVASKLPLPFKVFEFGRVHRYEPSGSYGLLRVRGFTQDDAHIIV-PGGRVIDVVYDVFEEMKLVLERLFKL-EKYGIDIVELEGEAAFYGPKLDFIEESGVSKEWQMGTIQFDFNLPRRFRLYDVVREEIEEVYIIHRALLGSIERFLGVYLEHRRGR----MPFTLAPIQFAVIAV----KTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSKTGLSSDVRHIESTAKPAVVFIGAKEVREKVLDVRVFDLESMKRRRLAIAYGDAADAVENLAAVAEELESPVRSLSGQAPRIPADFSFML........................................................................... 471
18 -67.2003ugq_A mol:protein length:460 Threonyl-tRNA synthetase, mitochondrial  ali model follow..  19  1MGSSSSGLVPRGSHMASATKNAS--------------SATPATMTSMVSQRQDLFMTDPSPGSMFFLPNGAKIFNKLIEFMKLQQKKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVET---TDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGASGLTRLRKFHQDDGHIFC-TPSQVKSEIFNSLKLIDIVYNKIFPFVKGGGKPWKLNPGDGAFYGPKLDIMVTDHLRKTHQVATIQLDFQLPERFDLKFKDQDNSYKRPIMIHRAFGSIERFMALLIDSNEGR----WPFWLNPYQAVIIPVNTKNVQQLDMCTALQKADDMEPVPLNDWHFNVDLDIR-NEPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRERDNRKSEKLTMSQIWEKFIELEKNYK....................................................................................................... 454
19 -67.1001nyq_A mol:protein length:645 threonyl-tRNA synthetase 1  ali model follow..  15  207.GDSNNKMLQRIYGTAFFDKKELKAHLQM-------LEERKERDHRKIGKELELFTNSQGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPM----QLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGASGLQRVRGMTLNDSHIFV-RPDQIKEEFKRVVNMIIDVYKDFGFEDYSFGLSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVSTMERFVAFLTEETKGA----FPTWLAPKQVQIIPVN---------VDLHYDYARQLQDELKSQGVRVSIDDR-NEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIRLKKHR..................................................................................................... 645
20 -65.5004hwo_A mol:protein length:411 Threonine--tRNA ligase  ali model follow..  17  1........................................MARDHRKIGKQLDLYHMQEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTT------SSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSHGLMRVRGFTQDDAHIFC-TEEQIRDEVNGCIRLVYDMYSTFGFEKIVVNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRALGSMERFIGILTEEFAGF----FPTWLAPVQVVIMNI----------TDSQSEYVNELTQKLSNAGIRVKADLR-NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSRSLKQLEE................................................................................................. 403
21 -62.8001qf6_A mol:protein length:642 THREONYL-TRNA SYNTHETASE  ali model follow..  17  208.GDSNNKMLQRIYGTAWADKKALNAYLQRL-------EEAAKRDHRKIGKQLDLYHMQEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTT------SSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSHGLMRVRGFTQDDAHIFC-TEEQIRDEVNGCIRLVYDMYSTFGFEKIVVNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRALGSMERFIGILTEEFAGF----FPTWLAPVQVVIMNI----------TDSQSEYVNELTQKLSNAGIRVKADLR-NEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSRSLKQLEE................................................................................................. 642
22 -50.8001b76_A mol:protein length:442 Glycine--tRNA ligase  ali model follow..  13  1.................................AASSLDELVALCKRRGFIFQSSEIYGLQGVYDYGPLGVELKNNLKQAWWRRNERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNAKARYRGGRGLLAYLRPETAQGIFVNFKNVLDATSKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYF-VRPGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRLELEGIAQRTDFDLGSHTKDQEAAYRDPETGKWFVPYVIEPSAGVDRGVLALLAEAFTREE-LKLKPQLAPIKVAVIPL-------VKNRPEITEYAKRLKARLLALGLGRVLYEDTG-NIGKAYRRHDEVGTPFAVTVDYDTIGQSTVTVRDRDTMEQIRLHVDELEGFLRERLR.......................................................................................................... 441
23 -42.1002cim_A mol:protein length:522 SERYL-TRNA SYNTHETASE  ali model follow..  14  156.NRVPDRILTLLEEKIEAAQYGAKAEHWNLLWQREPMEHPFKEDPTQAMMKEGWLKRGSSRGQWIHGPQSARIFRTFEKIVLEELEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRGTSHRYESGGIHGIERVDEFHRIEIVWI-GTKEEVLKCAEELHDRYMHIFNDILDIEWRKQEGLLGLAEENTVGTTDYEACLPPDGEWLEFQNVSINGDKYPKGFNVKLQSGD----ELWSGCSGVGL-ERWAAVFLAQKGLDPA-NWP---EEFRNRVGEM........................................................................................................................................................................................................... 509
24 -41.2002pme_A mol:protein length:693 Glycyl-tRNA synthetase  ali model follow..  12  28..KEDKAPQVDVDKAVAELKARKRVLEAKELALQPKDDIVDRAKMEDTLKRRFFY-YGGVSGLYDFGPVGCALKNNIIQTWRQHFQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVMFKTFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAKAYKKDAKLVMEYLAICDECYITEMEMLLNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVREGFSFPAVVAPFKCSVLPL--------SQNQEFMPFVKELSEALTRHGVSHKVDDSSG-SIGRRYARTDEIGVAFGVTIDFDTVNKTTATLRDRDSMRQIRAEISELPSIVQDLANG--ADVEARYPLFEGQETGKKETIEELE.............................................................................. 687
25 -39.6001ati_A mol:protein length:505 GLYCYL-TRNA SYNTHETASE  ali model follow..  12  1.....................................AASSLDELVALCKRRGFI-YGGLQGVYDYGPLGVELKNNLKQAWWRRNERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNRITKKRGGRGLLAYLRPETAQGIFVNFKNVLDATSKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYF-VRPGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLEEGIAQRTDFDLGSHTKDQRDPETGKWFVPYVIEPSAGVDRGVLALLAEAFTREE-LKLKPQLAPIKVAVIPL-------VKNRPEITEYAKRLKARLLALGLGRVLYEDTG-NIGKAYRRHDEVGTPFAVTVDYDTIGQSTVTVRDRDTMEQIRLHVDELEGFLRERLR.......................................................................................................... 504
26 -36.1003qne_A mol:protein length:485 Seryl-tRNA synthetase, cytoplasmic  ali model follow..  13  120.QDEENNELVRTWTPENYKKPEQIAA---------ATGAPAKLSHHEVLLRLDGYDPEVGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGE-----DEKYLIATSEQPISAYHAGEWFSPAEQLPVRYAGYSSCFRREAKDAWGIFRVHAFEKIEQFVL-TEPEKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSG-ELNNAAAKKYDLEAWFPFQQEYKELVSCSNCTDYQSRNLEIRCGQNQQEKKYVHCLNSTLSATERTICCILENYQKEDGLVIPEVLRKY---------------PGEPEFIPYIKELPKNTTSVKKAKGKNPK-NTTSVKKAKGKNGS....................................................................................................................................................... 478
27 -34.0005c51_B mol:protein length:485 DNA polymerase subunit gamma-2, mitochondrial  ali model follow..  10  28...GQPELLTERSSPKGGHVKSHAELEGNGEHPEAPGSGEGSEALLEICQRRHFLSGSKQGCHPGFGPLGVELRKNLAAEWWTSVFREQVFPVDALHHKPGPLLPGDSAFRLVSAETLREILQDKENVLKTSGKLRENLLHGALEHYVNCLDLVNRLPYGLAQIGVCFHPVFDTKQIVKSIGEKTEASLVWF-TPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNF--KELIETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENLKLHPCLAPIKVALDVGRGPT-------LELRQVCQGLFNELLENGISVGYLETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISSAKN...................................................................................................... 484
28 -33.2002g4c_A mol:protein length:474 DNA polymerase gamma subunit 2  ali model follow..  10  8MDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAPGSGEGSEALLEICQRRHFLSGSKSGCHPGFGPLGVELRKNLAAEWWTSVFREQVFPVDALHHKPGPLLPGDSAFRLVSAETLREILQDKENVLKTSGKLRENLLHGALEHYVNCLDLVNRLPYGLAQIGVCFHPVFDTKQGVKSIGEKTEASLVWF-TPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFP-KELIETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENLKLHPCLAPIKVALDVGRGPT-------LELRQVCQGLFNELLENGISVGYLETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISSAKN...................................................................................................... 467
29 -33.1004ztu_B mol:protein length:472 DNA polymerase subunit gamma-2, mitochondrial  ali model follow..  10  1MDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAPGSGEGSEALLEICQRRHFLSGSKSGCHPGFGPLGVELRKNLAAEWWTSVFREQVFPVDALHHKPGPLLPGDSAFRLVSAETLREILQDKENVLKTSGKLRENLLHGALEHYVNCLDLVNRLPYGLAQIGVCFHPVFDTKNGVKSIGEKTEASLVWF-TPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFP-KELIETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENLKLHPCLAPIKVALDVGRGPT-------LELRQVCQGLFNELLENGISVGYLETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISSAKN...................................................................................................... 460
30 -29.7004h2w_A mol:protein length:346 Amino acid--[acyl-carrier-protein] ligase 1  ali model follow..  15  1MGSSSSGLVPR------------GSHMNIAVLPNSPDTAPQIADPLDHLADKLFHS-MGSDGVYARTALYESIVERLAALIT-SHREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREPADLVLSPAACYPVYPIAASRGPL-PKGGLRFDVAADCFRRE--PSKHLDRLQSFRMRE-YVCIGTPDDVSDFRERWMVRAQAIARDLGLTFRVDYAKMLANNQRDQQLKFELLIPLRSEEQPTACMSFNYHREHFGTTWGIQDAN----GEPAHTGCVAFGM-DRLAVAMFHTHGTDLS-AWPAKVRDI.................................................................................................................................................................................................................. 323
31 -29.7001g5h_A mol:protein length:454 MITOCHONDRIAL DNA POLYMERASE ACCESSORY SUBUNIT  ali model follow..  10  16.................................DAPEHAVAREALVDLCRRRHFLSAALLSGCHAFGPLGVELRKNLASQWWSSMFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDRENLLKTSGKLRATLLHGALEHYVNCLDLVNKLPFGLAQIGVCFHNSNQTPSSVTRVGEKTEASLVWF-TPTRTSSQWLDFWLRHRLLWWRKFAMSPSNFSSADCQDELGRKGSKLYYSFP-KEPIETLWNLGDQELLHTYPGNVSTIQGRDGRKNVVPCVLSVSGDVDLGTLAYLYDSFQLAENLKLHPCLAPIKVALDVG-------KGPTVELRQVCQGLLNELLENGISVGYSETVHSSLEQLHSKYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKLRDFLVKYLASASN...................................................................................................... 442
32 -29.1003mey_A mol:protein length:346 Bll0957 protein  ali model follow..  15  1MGSSSSGLVPR------------GSHMNIAVLPNSPDTAPQIADPLDHLADKLFHS-MGSDGVYARTALYESIVERLAALI-TSHREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREPADLVLSPAACYPVYPIAASRGPL-PKGGLRFDVAADCFRRE--PSKHLDRLQSFRMRE-YVCIGTPDDVSDFRERWMVRAQAIARDLGLTFRVDYAQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYHREHFGTTWGIQDAN----GEPAHTGCVAFGM-DRLAVAMFHTHGTDLS-AWPAKVRDI.................................................................................................................................................................................................................. 323
33 -27.5003ikl_A mol:protein length:459 DNA polymerase subunit gamma-2, mitochondrial  ali model follow..  9  25VDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAPGSGEGSEALLEICQRRHFLSGSKSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALHHKP-------------------GPLLPGDSAFRGGLRENLLHGALEHYVNCLDLVNRLPYGLAQIGVCFHPVFDTKQIVKSIGEKTEASLVWF-TPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNF--KELIETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENLKLHPCLAPIKVALDVG-------RGPTLELRQVCQGLFNELLENGISVWPGETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISSAKN...................................................................................................... 452
34 -24.8003vbb_A mol:protein length:522 Seryl-tRNA synthetase, cytoplasmic  ali model follow..  14  167.........................................KYSHVDLVVMVDGFEGEVVAGSYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVRDTRGIFRVHQFEKIEQFVYSSPHNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSG-SLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHMLNAATTRTICAILENYQTEKGITVPEKLKEFLQELIPSKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDALE........................................................................................................................................................................ 516
35 -24.7001qe0_A mol:protein length:420 Histidine--tRNA ligase  ali model follow..  11  2........................................................IKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGDSTDVVQKEMYTFKDKGD-----RSITLRPEGTAAVVRSYEHKMQGNPNQPIKLYYNGPMFRYE-RKQKG--RYRQFNQFGVEAIGAENPSVDAE---VLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEALVKHFEPVIHEFCSDCQSRLHTDPMRILDTDFLNEESKAYYEQVKAYPYTEDPNLVHTAFELMMDNPNYIELDIEENLDLFIVTMG----------DQADRYAVKLLNHLRHNGIKADKD--LQRKIKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK............................................................................................................. 420
36 -24.7001wu7_A mol:protein length:434 Histidyl-tRNA synthetase  ali model follow..  13  4......................................................LQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKS--EELLQQTYSFVDKGG-----REVTLIPEATPSTVRMVTS--RKDLQRPLRWYSFPKVWRYE-EPQAG--RYREHYQFNADIFGSDSPEADAE---VIALASSILDRLGLGIDEMARITGKSSEEIARMAAVEDLLASYGVKNVRYDFSIVRGLSYYTGIVFEAYDRSGQFRAILGGGRYDNLASLMSGESVPAVGFGMGDAVISLLLKRENVQIPREKKSVYICRVGKINSSIMNEYSRKLRERGMNVTVE--MERGLSAQLKYASAIGADFAVIFGERDLERGVVTIRNMYTGSQENVGLDSVVEHLISQATL......................................................................................................... 427
37 -24.5005e3i_A mol:protein length:438 Histidine--tRNA ligase  ali model follow..  13  1...................................................MAMSSIVAIKGFNDVLPTQTAAWRRLEQHLASLMDAYGYQQIRLPIVEQTGLFKRADATDIVEKEMYTFFDKGNPP---ESLTLRPEGTAGCVRALVEH-NLLRGATPRVWYMGPMFRYE-KPQKG--RYRQFHQFGVETFGVATPDIDAE---LIMLTARLWKRMGVDHMVQDERTEYRNALVAFLNEHKDALDEDSQRRLTTNPLRILDSKIESTQKIDFLKEDSLSHFQQLQDYALGSQGTVCAGLVGQLKGKADQSVPLLLLLEQVEQAEIVRDCEAFLVAEPAYQSKALVLAEQLRDQLEAANSNIRSQGSMKSQMKKADQAGAVYAIILGEREWEAQQLAVKELATAEQSQVALAELVPFLIEKFTK......................................................................................................... 432
38 -24.2003w3s_A mol:protein length:527 Type-2 serine--tRNA ligase  ali model follow..  18  147LRRHVIDRVIRLVAWAVEERSELVERVTKVEPGTVVDESGPRRIRFRGARRRGWVKEFPGRGQWIYTPPMAALFEVLRDFLLERVRKLGFEPALFPKLIPLETMFRMRYLHGLPDGMYYVCPPKRDPELDPGYVLAPAQCEPFYELLRDEVVDPERLPIKLYDCGWTYRWEGGAAKGLERVNEFQRIE-HVWIAEPEEAYRIRRELLEATKRVAEELELEWKVVVSDEDRDIELPDVPSYEFEVYLPFKGERSSEEAWISVGSHFVDGFNV----KEKSGRTLFTGCAGLGV-TRWVVGLLAQHGFYPY-EWPEPI..................................................................................................................................................................................................................... 505
39 -24.2005c53_B mol:protein length:903 Pol gamma B  ali model follow..  11  362LRQVCQGLFNELLENGISVWPGYLETMQSSLEQLYSKYDEMSILFTVLVTETTL-----ENGLIHLRSRDTTMISKLKDFLIKYISRSRVAVRACHKVCRCLLSGFGGRVDAGQPELLTERSSPKGGHVKSHAELEPLGVELRKNLAAEWWTS-KRLPYGLAQIGVCFHPVFDTKQGVKSIGEKTEASLVWF-TPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFP-KELIETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENLKLHPCLAPIKVALDVG-------RGPTLELRQVCQGLFNELLENGISVWPGETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISSAKN...................................................................................................... 902
40 -24.1004g85_A mol:protein length:517 Histidine-tRNA ligase, cytoplasmic  ali model follow..  12  1.GPGSEFELRRQMAERAALEELVKLQGERVRGLKQQKASAEEEVAKLLKLKAQLFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETL--MGKYGEDSKLIYDLKDQGG-----ELLSLRY-----LTVPFARYLAMNKLTNIKRYHIAKVYRRD-NPAMTRGRYREFYQCDFDIAGNFDPMIPDA--ECLKIMCEILSSLQIGDFLVKQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARIYEAVLLQTPAQAGEEPLGVGSVAAGGRLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQ......................................................................................................... 515
41 -24.0001ser_A mol:protein length:421 PROTEIN (SERYL-TRNA SYNTHETASE (E.C.6.1.1.11))  ali model follow..  14  127....................................PEFSFPPLDHVALMEKNGWWEPRISRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAI--------AETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAKDVRGLMRVHQFHKVEQYVLTESLEASDRAFQELLENAEEILRLLELPYRLVEVATG-DMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRILAMLLENHQLQDGVRVPQALIPY.................................................................................................................................................................................................................. 411
42 -23.9003hrk_A mol:protein length:456 Histidyl-tRNA synthetase  ali model follow..  13  1..................................MAMGTLEAQTQGPGSMQKNMVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKA--EEITEQMFNFITKGG-----HRVALRPEMTPSLARLLLGKGRSLL-LPAKWYSIPQCWRYE-AITRG--RRREHYQWNMDIVGVKSVSAEVE---LVCAACWAMRSLGLSLSLKSIDEIAQRVGEEHEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYNLLTTYGSPTPIPCAGFGFGD-CVIVELL------QEKRLLPDIPHVVDDVVIPFD----------ESMRPHALAVLRRLRDAGRSADII--DKKKVVQAFNYADRVGAVRAVLVAPEEWERGEVQVKMLREGTGKEEGGAERGFAVPL............................................................................................................. 446
43 -23.4002dq3_A mol:protein length:425 Seryl-tRNA synthetase  ali model follow..  15  104.......WIPNLPHPSVPVGEDEKDNVEVRRWGEPRKFDFEPKPHWEIGERLGILDFKRGSRFTVIAGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKC--------ERDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAKDIRGIIRQHQFDKVELVKI-VHPDTSYDELEKLVKDAEEVLQLLGLPYRVVELCTG-DLGFSAAKTYDIEVWFPSQNKYREISSCSNCEDFQARRMNTRFKDSKTGKNRFVHTLNGSGLAVRTLAAILENYQQEDGVVVPEVLRDY.................................................................................................................................................................................................................. 416
44 -23.3003hri_A mol:protein length:456 Histidyl-tRNA synthetase  ali model follow..  13  1..................................MAMGTLEAQTQGPGSMQMNMVETEPVQGCRDFPPETMRLRKYLFDVFHSTARKFGFEEYDSPVLESEELYIRKA--EEITEQMFNFITKGG-----HRVALRPEMTPSLARQLLAKGRSLL-LPAKWYSIPQCWRYE-AITRG--RRREHYQWNMDIIGVKSVSSEVELVCAAGLESNVVDAITSTLSLKTIDEIAQRIGEEHEAVRELRDFITQIEAYGFGDWVIFDASVVRGLAYNLLTTYGSPTAVPCVGFGFGD-CVIVELL------NEKKLLPELHHVVDDLVIPFD----------ETMRPHALSILRRLRDAGRSADIV--DKKKVVQAFNYADRIGALRAVLVAPDEWARGEVRVKMLREGAGREEGANERGIVLPV............................................................................................................. 446
45 -23.2004rdx_A mol:protein length:423 Histidine--tRNA ligase  ali model follow..  14  1....................................................GPMTARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGAATDIVRKEMFTFQDRGG-----RSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAE-RPQKG--RYRQFHQVNYEALGSENPILDAE---AVVLLYECLKELGLRRLKVKLSSVGDPEDRARYNAYLREVLSPHREALSEDSKERLELNPMRILDLDFLGEEARAHLKEVERHEIGAQSALGGGLSELLGGPRGVGFAFGVERVALALEAEGFGLPEEKGPDEEAVAEAFYLAEALRP-RLRAEYA--APRKPAKGLEEALKRGAAFAGFLGEDELRAGEVTLKRLATGEQVRLSREEVPGYLLQALG.......................................................................................................... 423
46 -23.1004g84_A mol:protein length:464 Histidine--tRNA ligase, cytoplasmic  ali model follow..  12  12......................................................FVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETL--MGKYGEDSKLIYDLKDQGG-----ELLSLRY-----LTVPFARYLAMNKLTNIKRYHIAKVYRRD-NPAMTRGRYREFYQCDFDIAGNFDPMIPDA--ECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKV-LDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQ......................................................................................................... 462
47 -23.0003err_A mol:protein length:536 fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA synthetase from Thermus thermophilus  ali model follow..  14  243..........................................LDHVALMEKNGWWEPRISSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAI--------AETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAKDVRGLMRVHQFHKVEQYVLTEASLESDRAFQELLENAEEILRLLELPYRLVEVATG-DMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRILAMLLENHQLQDGVRVPQALIPY.................................................................................................................................................................................................................. 520
48 -22.9002dq0_A mol:protein length:455 Seryl-tRNA synthetase  ali model follow..  15  118.KDENDNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILEWKKLHVDLLEILGGADFARASRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKV--------EDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAKDTKGIFRVHQFHKVEQFVY-SRPEESWEWHEKIIRNAEELFQELEIPYRVVNICTG-DLGYVAAKKYDIEAWMPGQGKFREVVSASNCTDWQARRLNIRFRDRTDEKPRYVHTLNSTAIATRAIVAILENHQEEDGVRIPKVLWKY.................................................................................................................................................................................................................. 437
49 -22.9001wle_A mol:protein length:501 Seryl-tRNA synthetase  ali model follow..  16  180..........................................RGHLEIAEKLDIIRQKHVSGSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNID----PSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETKEPWGLYRVHHFTKVEMFGVTGGLEQSSELLEEFLSLQMEILTELGLHFRVLDMPTQ-ELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMFQTEAGELQFAHTVNATGCAVPRLLIALLESYQQKDGVLVPPALQPY.................................................................................................................................................................................................................. 461
50 -22.4003lsq_A mol:protein length:484 Seryl-tRNA synthetase  ali model follow..  12  140.......NVGNILHESVPIAQDEETGNTVVRTFGNTTKRAKLNHVSIMERLGMMDTSKSMAGSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQV------SGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEARDTLGIFRVHQFDKIEQFVVCSPREESWRHLEDMITTSEEFNKSLGLPYRVVNICSG-ALNNAAAKKYDLEAWFPASGAFRELVSCSNCTDYQSQSVNCRYGPNLRVKEYCHMLNGTLCAITRTMCCICENYQTEEGVVIPDVLRPY.................................................................................................................................................................................................................. 460
51 -21.9003net_A mol:protein length:465 Histidyl-tRNA synthetase  ali model follow..  13  1.............................................SNAMAKNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKG--PNRQAEKDKSGDTGS-----EARALKFDQTVPLAAYIARHLNDLT-FPFARYQMDVVFRGE-RAKDG--RFRQFRQCDIDVVGREKLSLLYDAQ-MPAIITEIFEAVNIGDFVIRINNDGSVDDVLDKLKHLSQTLPESEQFNLGVSELELNYYTGTVYETTLIGHEALGSICSGGRYGVGISTRLISRL-----LKAGILNTLPPTPAQVVVVNMQ----------DELMPTYLKVSQQLRQAGLNVITN--EKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRRLT.......................................................................................................... 465
52 -21.7004e51_A mol:protein length:467 Histidine--tRNA ligase  ali model follow..  10  6....................................LEAQTQGPGSMTEQKRKLEKLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGEVTDIVEKEMYSFVDALN----GENLTLRPENTAAVVRAAIEH-NMLYDGPKRLWYIGPMFRHE-RPQRG--RYRQFHQVGVEALGFAGPDADAE---IVMMCQRLWEDLGLTGIKLEINSLGLAEERAAHRVELIKYLEQHADKLDDDAQRRLYTNPLRVLDTKFLGDVSRAHFEGLQRLKLGAQGTVAAGLIEQLGGKPACGWAMGIERILELLKEEHLVPEQEGVDGDAAREQAFIVAERLRDTGLDVILHCSADASFKSQMKRADASGAAFAVIFGEDEVTNGTASVKPGEKSVQQSVPVESLTEFLINAMVATAED..................................................................................................... 458
53 -21.4006blj_A mol:protein length:485 Serine-tRNA ligase  ali model follow..  13  174.................................VDPETGYKCLKHIDIMRKLGGLATEQVGGGYFLLGDLVRMNLALQNYAIDFLAKKGYMPIYTPFFMTKEQMKKVAQLSQFDEELYTVTGE------GEDKYLIATSEQPIAAFHLEKRFDESELPIKYCGMSTCFRKEVKDTLGIFRVHQFEKIEQFVVTSPKDNSWEMFDEMIGNSEAFYQSLGIPYRVVNIVSG-ALNNAAAKKFDLEAWFPGADEG-ELVSCSNCTDYQTRRLEVKYKKQGSEVEFCHMLNSTLTATSRTLCCIVENYQTPEGVNVPEVLQPY.................................................................................................................................................................................................................. 468
54 -20.9002el9_A mol:protein length:431 Histidyl-tRNA synthetase  ali model follow..  12  11.......................................................NIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAEVTDVVEKEMYTFEDRNG-----DSLTLRPEGTAGCVRAGIEH-GLLYNQEQRLWYIGPMFRHE-RPQKG--RYRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISHVTLELNSIGSLEARANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDGDYLDEESREHFAGLCKLSLGSQGTVCAGLVEQLGGRAAVGFAMGLERLVLLVQAVNPEFKADPVVDADTQSAAMALAERLRDELPGVKLMTNGGGNFKKQFARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTLLG.......................................................................................................... 431
55 -20.5001v95_A mol:protein length:130 Nuclear receptor coactivator 5  ali model follow..  9  8.............................................................................................................................................................................................................................................................................................................................PVDCSVIVV----------NKQTKDYAESVGRKVRDLGMVVDLI-NTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGTEHRNMPQADAMVLVARNYERYKNECREKERE.............................................................................................. 118
56 -19.4004cs2_A mol:protein length:274 PYRROLYSINE--TRNA LIGASE  ali model follow..  8  3.............ALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRR-------KKDLQQIYAEEREYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMG--IDNDTELSKQIFR-----VDKNFCLRPMLAPNLANYLRKLDRALPD-PIKIFEIGPCYRKESDGK----HLEEFTMLNFCQM-----GSGCTRENLESIITDFLNHLGIDFKIV................................................................................................................................................................................................................................................................................................................. 191
57 -18.7002lw7_A mol:protein length:170 Histidine--tRNA ligase, cytoplasmic  ali model follow..  13  68............................................................................................................................................................................................................................................................................................................................TETQVLVASAQ----------KKLLEERLKLVSELQDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQ......................................................................................................... 165
58 -18.7005k1p_A mol:protein length:274 Pyrrolysine--tRNA ligase  ali model follow..  10  2...................PALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEEREYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDT-------ELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPD-PIKIFEIGPCYRKESDGKE---HLEEFTMLAFAQM-----GSGCTRENLESIITDFLNHLGIDFKIV................................................................................................................................................................................................................................................................................................................. 191
59 -18.4003qtc_A mol:protein length:290 Pyrrolysyl-tRNA synthetase  ali model follow..  9  7...PRGSHGASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRR-------KKDLQQIYAEEREYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMG--IDNDTELSKQIFR-----VDKNFCLRPMLTPNLYNYLRKLDRALPD-PIKIFEIGPCYRKESDGK----HLEEFTMLVFWQM-----GSGCTRENLESIITDFLNHLGIDFKIV................................................................................................................................................................................................................................................................................................................. 205
60 -18.2004bw9_A mol:protein length:291 PYRROLYSINE--TRNA LIGASE  ali model follow..  8  10...PRGSHMASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESEL-------LSRRKKDLQQIYAEEREYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMG--IDNDTELSKQIFR-----VDKNFCLRPMLAPNLGNYLRKLDRALPD-PIKIFEIGPCYRKESDGK----HLEEFTMLNFCQM-----GSGCTRENLESIITDFLNHLGIDFKIV................................................................................................................................................................................................................................................................................................................. 208
61 -18.0002zni_A mol:protein length:308 Pyrrolysyl-tRNA synthetase  ali model follow..  19  1MGSSSSGLVPRGSHMFLTRRDPPLSSFWTKVQYQRLKELNASGEQLEMGFSDALSRDRAFQGIQLRTVKHRPALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMT--IGEDHPLFSQVFW-----LDGKKCLRPMLAPNLYTLWRELERLWDK-PIRIFEIGTCYRKESQGAQ---HLNEFTMLNLTELGTPLEERHQRLEDMAR---WVLEAAGIREFELVTE.............................................................................................................................................................................................................................................................................................................. 226
62 -17.9004q6g_A mol:protein length:267 Pyrrolysine--tRNA ligase  ali model follow..  8  7..................QTDRLEVLLNPKDEISLNSGKPFRELESELLSRR-------KKDLQQIYAEEREYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDT-------ELSKQIFRVDKNFCLRPMVAPNIFNYARKLDRALPD-PIKIFEIGPCYRKESDGKE---HLEEFTMLNFFQM-----GSGCTRENLESIITDFLNHLGIDFKIV................................................................................................................................................................................................................................................................................................................. 190
63 -17.3002e3c_A mol:protein length:291 Pyrrolysyl-tRNA synthetase  ali model follow..  19  1MGSSSSGLVPRGSHMASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMG--IDNDTELSKQIFR-----VDKNFCLRPMLAPNLYNYLRKLDRALPD-PIKIFEIGPCYRKESDGKE---HLEEFTMLNFCQM-----GSGCTRENLESIITDFLNHLGIDFKIVGDSC............................................................................................................................................................................................................................................................................................................. 212
64 -16.6004tqd_A mol:protein length:291 Pyrrolysine--tRNA ligase  ali model follow..  19  1MGSSSSGLVPRGSHMASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMG--IDNDTELSKQIFR-----VDKNFCLRPMLAPNLYNYLRKLDRALPD-PIKIFEIGPCYRKESDGKE---HLEEFTMLSFIQM-----GSGCTRENLESIITDFLNHLGIDFKIVGDSC............................................................................................................................................................................................................................................................................................................. 212
65 -16.1003od1_A mol:protein length:400 ATP phosphoribosyltransferase regulatory subunit  ali model follow..  10  8......................................................FMFEKPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILD--QQLFKLLDQQG-----NTLVLRPDMTAPIARLVASSLKD-RAYPLRLAYQSNVYRAQQNEG----KPAEFEQLGVELIGDGTASADGE---VIALMIAALKRAGLSEFKVAIGHVGYVNALLMDVVGNEQRADRLRRFLYEKNYVGYREHVKSL--YEVLESYGASEYVKFDLTLVLHMSYYTGVVFEGYGNRSGGRYDELLSKFDLLVEALNGEIISNGHESNERRFEAIELARKKRANGEAVVLQDLAG-VTDVDAMSSNYQDVIYCIGTAGRGGEDA....................................................................................................................................... 400
66 -14.7003rac_A mol:protein length:373 Histidine-tRNA ligase  ali model follow..  10  1..................................SNAMNGTRSAWGARAWEAVRGFADRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTL-LRARSPESSRDWIRLFDGGG-----DAVALRPEMTPSIARMAAPRVAA-GRTPIRWCYCERVYRRTLSWASG--KAAESTQVGIERIGEEASVDVDM--DVLRLLHEASAAAGVR--------------------HHRIVVSHARLVPRLLDALGISASLSRAFLACLTSGNYVQFRELWQLHAAKDVDLLANLLTWSPAERDAAKRSREASDRELEALLRDAVDPRAAADVRDAWRYLCRLAEALHDSGLVVTFDLALHRELDY-VFEMFAPGVGAPIAQGGR-------ELLAQFGAGAPAVGFAFEVERVMAVLEA......................................................................................................... 365
67 -12.3006FTT Entity 1(prereleased)  ali follow..  10  5............................................................DGVADVLFEDAHKQEVLRHQLTQQLITHGYQLVSPPMIEFTESL-LSGASEDLKRQTFKIIDQLT----GRLMGIRA---DITPQILRIDAHHGGDGIARYCYAGDVIHTLPSGL----GSRTPLQLGAEIFGCESIAADIE---LIDVLFSMINSLDMS--------------------VLHVDLGHVTIFKRLAELAALSASDTEQLMQLYANKNLPELKQVCQVLPMGSDFYTLARFGHDIAN----------------LLGRLSENAQQDTKIVTAIDELQRLKAHLQVQWCAVSIDVTEHYHTGIVF-NGYINSETQPLVRGGR---DGMKSNQLATNQPRQATGFSMDVSRLLAHTQLDAPFIVLIDYDAFNNDSAQRQLLLQQVASLRQQGYRVTMPLTAEDMPVGLTHRLS.................................................. 377
68 -12.3005m8h_A mol:protein length:388 ATP phosphoribosyltransferase regulatory subunit  ali model follow..  10  5............................................................DGVADVLFEDAHKQEVLRHQLTQQLITHGYQLVSPPMIEFTESL-LSGASEDLKRQTFKIIDQLT----GRLMGIRA---DITPQILRIDAHHGGDGIARYCYAGDVIHTLPSGL----GSRTPLQLGAEIFGCESIAADIE---LIDVLFSMINSLDMS--------------------VLHVDLGHVTIFKRLAELAALSASDTEQLMQLYANKNLPELKQVCQVLPMGSDFYTLARFGHDIAN----------------LLGRLSENAQQDTKIVTAIDELQRLKAHLQVQWCAVSIDVTEHYHTGIVF-NGYINSETQPLVRGGR---DGMKSNQLATNQPRQATGFSMDVSRLLAHTQLDAPFIVLIDYDAFNNDSAQRQLLLQQVASLRQQGYRVTMPLTAEDMPVGLTHRLS.................................................. 377
69 -12.0001z7m_A mol:protein length:344 ATP phosphoribosyltransferase regulatory subunit  ali model follow..  11  2..........................................RGSGSIEGRMEKINYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTASNGKTFNQEKMFQFIKHEG-----QSITLRY---DFTLPLVRLYSQIKDSTSARYSYFGKIFRKEKRHK----RSTENYQIGIELFGESADKSELE---ILSLALQVIEQLGLNKTVFEIGS--------------------------FQRLCQLADGSTELLTELLLKKDLSGLNAFIEKNNFSKELRGLLKEIFITNE-------------------SRLENLVTNTKDDVLISSFDQLKEFSEKLSMIKPIIIDLGMVPKMDYYKAYSSAANQPILSGGR-------QLLSNFQEEAFAIGFCCHMDTILKALER......................................................................................................... 330
70 -9.5503g1z_A mol:protein length:326 Putative lysyl-tRNA synthetase  ali model follow..  11  17......................................................................LLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLF--------FETRFVGPGHSQGINLYLMTSPEYHMKRLLAAGCG-------PVFQLCRSFRNE---EMGRHHNPEFTMLEWYRPHYDMYRLMNEVDDLLQ--------------------------------QVLDCQPAESLSYQQAFQRHLEIDPLSADKTQLREAAAKLDLSNIADTEEDRDTLLQLLFTMGVEPHIGKEKPTFIYHFPASQASLAQISTEDHRVAERFEVYYKGIEQRFEQDNRKRAARGLPQQPIDQNLLDALAAGLPVMLALGAESLAD........................................................................................................................................ 317
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;