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Query: 5c53_B mol:protein length:903 Pol gamma B, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRSRVAVRACHKVCRCLLSGFGGRVDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAPGSGEGSEALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDSAFRKLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELIETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPGYLETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISSAKNVMRSRVAVRACHKVCRCLLSGFGGRVDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAPGSGEGSEALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDSAFRLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELIETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPGYLETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISSAKNVLast
1 -266.0005c53_B mol:protein length:903 Pol gamma B  ali model  100  1MRSRVAVRACHKVCRCLLSGFGGRVDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAPGSGEGSEALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDSAFRKLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELIETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPGYLETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISSAKNVMRSRVAVRACHKVCRCLLSGFGGRVDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAPGSGEGSEALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDSAFRLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELIETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPGYLETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISSAKNV 903
2 -121.0003ikl_A mol:protein length:459 DNA polymerase subunit gamma-2, mitochondrial  ali model follow..  95  4.RVAVRACHKVCRCLLSGF--GGRVDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAPGSGEGSEALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDSARGGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELIETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPGYLETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISSAKNV................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 453
3 -108.0005c51_B mol:protein length:485 DNA polymerase subunit gamma-2, mitochondrial  ali model follow..  100  1MRSRVAVRACHKVCRCLLSGFGGRVDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAPGSGEGSEALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDSAFRKLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELIETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPGYLETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISSAKNV................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 485
4 -105.0002g4c_A mol:protein length:474 DNA polymerase gamma subunit 2  ali model follow..  98  2..................RGSGSTMDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAPGSGEGSEALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDSAFRKLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELIETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPGYLETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISSAKNV................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 468
5 -105.0004ztu_B mol:protein length:472 DNA polymerase subunit gamma-2, mitochondrial  ali model follow..  99  1........................MDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAPGSGEGSEALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDSAFRKLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELIETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPGYLETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISSAKNVAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 464
6 -102.0001g5h_A mol:protein length:454 MITOCHONDRIAL DNA POLYMERASE ACCESSORY SUBUNIT  ali model follow..  71  1................WLSGYAGPADGTQQP--------------------------DAPEHAVAREALVDLCRRRHFLSGTPQQLSTAALLSGCHARFGPLGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRTSSQWLDFWLRHRLLWWRKFAMSPSNFSSADCQDELGRKGSKLYYSFPWGKEPIETLWNLGDQELLHTYPGNVSTIQGRDGRKNVVPCVLSVSGDVDLGTLAYLYDSFQLAENSFARKKSLQRKVLKLHPCLAPIKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSETVHSSLEQLHSKYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKLRDFLVKYLASASNVAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 446
7 -78.9001ati_A mol:protein length:505 GLYCYL-TRNA SYNTHETASE  ali model follow..  18  2........................................................................................................................................................................................................................................................................................................................................................................................................ASSLDELVALCKRRGFIFQSSEIYGGLQGVYDYGPL-------VELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNR--ITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMT---------------AAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPR---NFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQEALGITPETGKWFVPYVIEPSAGVDRGVLALLAEAFTREELP----NGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGR---VLYEDTGNIGKAYRRHDEVGTPFAVTVDYDTIGQSTVTVRDRDTMEQIRLHVDELEGFLRERLR..... 504
8 -76.8002pme_A mol:protein length:693 Glycyl-tRNA synthetase  ali model follow..  14  5...................................................................................................................................................................................................................................................................................................................................................GAEEVLAPLRLAVRQQGDLVRKLKE-VDKAVAELKARKRVLEAKELALQPKDDIVDRAKMEDTLKRRFFYDQAFAIYGGVSGLYD-GCALK-----NNIIQTWRQHF-----IQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVKDV--KNGECFRADHLLKAHLQKLMSDKKCSVEKK-----------SEMESVLAQLDNYGQ---------QELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRS---GLIRVREFTMAEIEHFVDPSEKNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMECYITEMEMLLNEKGEFTIETEGKTFQLTKDMINV-----KRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVRE------GDEQRTFFSFPAVVAPFKCSVLPLSQN-QEFMPFVKELSEALTRHGVSH---KVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTTATLRDRDSMRQIRAEISELPSIVQDLANGNIT. 661
9 -75.5001b76_A mol:protein length:442 Glycine--tRNA ligase  ali model follow..  26  1.............................................................AASSLDELVALCKRRGFIFQSSEIYGG----LQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPR---NFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQEALGITPETGKWFVPYVIEPSAGVDRGVLALLAEAFTREEL----PNGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGR---VLYEDTGNIGKAYRRHDEVGTPFAVTVDYDTIGQSTVTVRDRDTMEQIRLHVDELEGFLRERLR........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 441
10 -25.9002i4l_A mol:protein length:458 Proline-tRNA ligase  ali model follow..  10  15..................................................................................................................................................................................................................................................................................................................................................................................MRLSRFFLPILKENPKEAEIVSHRLMLRAGML----------RQEAAGIYAWLPLGHRV-----LKKIEQIVREEQN------RAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRH------------------------------------------------------------------------------------------------------KRELLYGPTNEEMITEIFRAYIKSYK-SLPLNLYHIQWKFRDEQRPR---FGVMRGREFLMKDAYSFDVDEAARKSYNKMFVAYLRTFARMGLKAIPMRA-ETGPIGGDLSHEFIVLAETGESGVRGIEVGQIFYFGTKYSDSMKANVTGPDGTDAPIHGGSYGVGVSRLLGAIIEACHDDNG-------------IIWPEAVAPFRVTILNLKQGDAATDAACDQLYRELSAKGVDVL---YDDTDQRAGAKFATADLIGIPWQIHVGPRGLAEGKVELKRRSDGARENLALADVVARLT......... 452
11 -24.2004k86_A mol:protein length:535 Proline--tRNA ligase  ali model follow..  11  1.........................................................................................................................................................................................................................................................................................................................................................................MGSSSSGLVPRGSHMASGAGEGQGPKKQTRLGLEAKKEENLADWYSQVITKSEMISGCYILRPWAYAI-----WEAIKDFFDAEIK------KLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIR-------------------------------------------------PTSETVMYPAYAKWVQS--------------------------------------------------RDLPIKLNQWCNVVRWEFKHPQ---PFLRTREFLWQEGHSAATMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKFAGGDYTTTIEAF--SASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMG------------LVLPPRVACVQVVIIPCEEDKEALIAKCNDYRRRLLSVNIRVRAD--LRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEAETKLQAILEDIQV. 427
12 -23.6001nj1_A mol:protein length:501 Proline-tRNA Synthetase  ali model follow..  11  13..............................................................................................................................................................................................................................................................................................................................................................................SHMQKPIKKDPNRYHGEKMTEFSEWFHNILEEAE--------IIDQRYPVKGMHVWMPHGFMIRKN-----TLKILRRILDRDHEEVLFPLL------VPEDELAKEAIHVKGFEDEV--------------------------------------------------------------------------------------------------YWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHT-DLPMRFYQVVNTFRYETKHTR--PLIRVREITTFKEATIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGSEYTVAFDTL----PDGKTLQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQT--CYGLSDRVIASVIAIHGDESG------------LCLPPDVAAHQVVIVPIKKAAEEVMEACRELRSRLEAAGFRV---HLDDRDIRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETLRELMKDILE. 411
13 -23.4005xip_A mol:protein length:498 Prolyl-tRNA synthetase, putative  ali model follow..  11  1.....................................................................................................................................................................................................................................................................................................................................................................................................GAMGVTAKKSTNFADWYTQVIVRGELISGCYIIRPWAYRI-----WEAVQKFFDDGIK------RLGVENCYFPMFVSAKLEKEKDHVEGFKPEVAWVTHYGDSEL--------------------------------------------------------------------------------------------------PEKVAIRPTSETIMYPAYAKWIRSHR-DLPLKLNQWNNVVRWEFKQPT---PFLRTREFLWQEGHTAATEEEAYTLVLEILELYRQWYEDYLAVPV-IKGEKSENEKFAGGKKTTTIEGIIPDTGRGIQAATSHLLGQNFSRMFSIEFEDEKGAKQL--VHQTSWGCTTRSLGVMIMTHGDDKG------------LVLPPRVVAVQAVIIPIIFKETGIVAKCRELERLLNAAGVRVKVD--DRTNYTPGWKFNDWELKGVPLRLEIGPRDVESCQTRVVRRDTSEARNVPWAEAASTIPAMLETMQK. 393
14 -23.3004hvc_A mol:protein length:519 Bifunctional glutamate/proline--tRNA ligase  ali model follow..  1.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MGSGEGQGPKKQTRLGLEAKKEENLADWYSQVITKSEMIEYHDISLRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSSGKTELAEPIAIRPTSETVMYPAYAKWVQSHR-DLPIKLNQWCNVVRWEFKHPQ---PFLRTREFLWQEGHSAATMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKFAGGDYTTTIEA-FISASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMG------------LVLPPRVACVQVVIIPCEEDKEALIAKCNDYRRRLLSVNIRVRAD--LRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEAETKLQAILEDIQV. 411
15 -23.0004ncx_A mol:protein length:506 Proline--tRNA ligase  ali model follow..  1.................................................MASNILGITSKKIENFSDWYTQVIVKSELIEYYD---------ISGCYILRPAAYYIWECVQA-FFNKEIKKLNVENSYFPLFVTKNKLEKEKNHIEGFSPETSETIMYSVFPKWIRSYRDLPLKLNQWNTVVRWEFKQPTP---FIRTREFLWQEGHTAKNEEEAVKLVFDILDLYRRWYEEYLAVPIIKGIKSEGEKFGGANFTSTAEAFIS-ENGRAIQAATSHYLTNFAKMFKIEFEDENEVKQY---VHQTSWGCTTRSIGIMIMTHGDDKG------------LVLPPNVSKYKVVIVPITTDENAIHSYCKDIEKILKNAQINCVYD--DRASYSPGYKFNHWELRGIPIRIEVGPKDLQNNSCVIVRRDNNEKCNVKKESVLLETQQMLVDIHKNLFLKAKKKLDDSIVQVTSF------SEVMNALNKCEDIATEEEIKKETQRLSLNQTNSETTLSGAMKPL.............................................................................................................................................................................................................................................................................................................................................................................................. 468
16 -22.9005f9y_A mol:protein length:511 Aminoacyl-tRNA synthetase  ali model follow..  13  1....................................................................................................................................................................................................................................................................................................................................................................................MASKENESLLGITADKITSFADWYSQ---------VIVKSEMIESGCYILRPWSYFI-----WETIQSVFDQKIK------QHDVQNAYFPIFVTKKLETEKDHVEGFSPEVAWVTKSGKSD---------------------------------------------------------------------------------------------------AEPIAIRPTSETIMYPYFAKWIRSHR-DLPLKINQWTSIVRWEFKHPT---PFIRTREFLWQEGHTASTRKEALEMVDIILNEYASIYEDLLATPVVKGTKSENEKFPGGDITKSIEG---PEIGRAVQAATSHLLGQNFSKMFGVEFEDEKGNKEY--AHQTSWGLTTRAIGVMIMTHGDNKG------------LVLPPKVAPVQVIIIPITVITEEQKKICNEVECILKKAGVRVKID--DRSNYTPGWKYNHWEVKGVCLRFEVGPRDIEKRSVRVVVRDNMEKMDIPISELESKIPKLLEEFQN. 400
17 -22.8005xif_A mol:protein length:500 Prolyl-tRNA synthetase (ProRS)  ali model follow..  13  1......................................................................................................................................................................................................................................................................................................................................................................................................GAMVTAKKDENFSEWYTQAIVRSEMISGCYIMRPWAFHI-----WEKVQRFFDDEIK------KMGVENSYFPMFVSHKLEKEKDHVEGFSPEVAWVTHYGDSPL--------------------------------------------------------------------------------------------------PEKIAIRPTSETIMYPAYAKWIRSHR-DLPLKLNQWCSVVRWEFKQPT---PFLRTREFLWQEGHTAATEEEAWELVLDILELYRRWYEECLAVPVIKG-EKSEGEKFAGGKKTTTVEAFIPENGRGIQAATSHLLGTNFAKMFEIEFEDEEGHKRL--VHQTSWGCTTRSLGVMIMTHGDDKG------------LVIPPRVASVQVVIIPIDENTGEILGKCRELKTMLEKADIRVRID--DRSNYTPGWKYNHWEVKGVPLRLELGPKDLAKGTARVVRRDTGEAYQISWADLAPKLLELMEGIQR. 392
18 -22.3005xil_A mol:protein length:512 Putative prolyl-tRNA synthetase  ali model follow..  5........................................................IAAKREENFSAWYIDVITKAEMIE---------YYDVSGCYIIRPWAYYVWKCVQR-FLGGKIEKLGVEDCYFPMFVSRSCLEREKDHIEGFAPETSETVMYPYYAKWIRSHRDLPVRLNMWNNVIRWEFSHPTP---FIRTREFLWQEGHCAAKAEECAKEVLEILECYASVYEQLLAVPVVRGRKTEKEKFAGGDYTTTVET---EAVGRGCQGATSHNLGQNFGKMFDIRFQDPENNEQTLIPWQNSWGLSTRVIGVMIMVHGDNRG------------MVMPPRVASTQVIIIPVEEARQELLASCWRLESELCEGGVRARCD--LRDNYSPGWRFNHWEVKGVPLRVELGPRELAERSLAVAVRHSGARHSVAWDAQTPAAVAALLEDAQMYARAKETMETHRVRVTEWTEFVPTLNRKCLILA-CGAMECENQVKKDSAEESKVAQAQETREDARAPSM.............................................................................................................................................................................................................................................................................................................................................................................................. 472
19 -21.0001h4q_A mol:protein length:477 PROLYL-TRNA SYNTHETASE  ali model follow..  13  39......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VRPYGYAIWENIQQVLDRMFEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWR-DLPQLLNQWGNVVRWEMRTR----PFLRTSEFLWQEGHTAATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEA----KDGKALQAGTSHYLGENFARAFDIKFQDRDLQVKY--VHTTSWGLSWRFIGAIIMTHGDDRG------------LVLPPRLAPIQVVIVPIDESRERVLEAAQGLRQALLAQGLRVHLD--DRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASRLGG-KETLPLAALPEALPGKLDAFHE. 390
20 -20.4001nyq_A mol:protein length:645 threonyl-tRNA synthetase 1  ali model follow..  11  25............................................................................................................................................................................................................................................................................................................................IAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEG--------GFYYDFDIDQNISSDDFEQIEKTMKQIRKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGHVPSTAKIKEFKLLSTAGAYWRGDSLQRIYGTAFFDKKELKAHLQMLEERKERDHIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYR-ELPIRIAELGTMHRYEASGAV--SGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADESTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVTMER-FVAFLTEETK-----------------AFPTWLAPKQVQIIPVNVDLHY--DYARQLQDELKSQGVRV---SIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIRLKK.. 643
21 -20.3001nj8_A mol:protein length:459 Proline-tRNA Synthetase  ali model follow..  10  1..........................................................GSHMLEFSEWYSDILEKAEIYD--------VRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHT-DLPIKIYQIVNTFRYETKHTRP---LIRLREIMTFK-TAHSTKEEAENQVKEAISIYKKFFDTLGIP---YLISKRPEWDKFPGAEYTMAFDTIFPDGRTMQIATVHNLGQNFSKTFEIIFETPTGDK---YAYQTCYGISDRVIASIIAIHGDEKG------------LILPPIVAPIQVVIVPLIFKGKEVMEKAKEIYEKLKGK----FRVHIDDRDIRPGRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEKTLNNIMENIKNRAWEKFENFITILEDINPDEIKNILSE..................................................................................................................................................................................................................................................................................................................................................................................................................................... 415
22 -20.2003ial_A mol:protein length:518 Prolyl-tRNA synthetase  ali model follow..  10  1.......................................................MAMGGDVTFSLTKTRDTFADWFDAIMDAAELVDRRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYK-DLPLKIHQTCTIFRHETKNTKP---LIRVREIHWNEAHCCATAEDAVSQLSDYWKVIDTIFSDELCFKGQKLRRVCWDRFPGADYSEVSD----MPCGRVLQTAGIHNLGQRFSSTFDILYANKANESVHPYLT--CAGISTRVLACALSIHGDSGG------------LVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNESKLGLRVSIDDDFSKSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKIPITEVMKVSSHTTENHELVVKNVIKDE--DAYKARLKEKAFAFHNS........................................................................................................................................................................................................................................................................................................................................................................................................................................ 432
23 -20.0005ucm_A mol:protein length:579 Proline--tRNA ligase  ali model follow..  11  29..............................................................................................................................................................................................................................................................................................................................................................................................................................LRAGM--IRRLASGLYTWLPMGRVLRKVETIVR--EEMNAAGALEVLMPAVQPAELWQESGRWEQYGPELLRLKDRH-----EREFCVGPTHEEVITDLARNELNSYKQL-KFRDEIRPRFGLMRGREFIMKDAYSFHLSQDSLQQTYDGMYQAYSKIFSRLGLDFRPVQADNGSIGSGSHEFHVLANSGEDDIVFSDSSDYAANIEKAEAVPDMRLVDTPNTKTIAALVDGFQLPIEKTIKTLVVHGAEEGTLVALIVRGDHELNEIKAALGPVNLPIACIVDRSVALMSDFAAGANIEDKHYFGVNWERDLPLPEVADLRNVVEGDPSPDGK---GTLVIKRGIEVGHIFQLGTKYSEAMKLSVLSEQGKPVNLIMPSALAPFQIALVPLKYETESVKQATDKLYAELTAAGFEVLLD---DKKTSPGVKFADMELIGIPHRIVISDRGLSEGVLEYKGRRDSESQNLPIGELMSFITEKLS..... 572
24 -19.6002j3l_A mol:protein length:572 PROLYL-TRNA SYNTHETASE  ali model follow..  10  1..............................................................................................................................................................................................................................MKQSKMLIPTLREVPNDAEVLSHQILLRAGYIRIYSYLPLANRVLEKLKTIMREEFE--------------------------KIDAVEMLMPALLPAELWKESGRYETYGPN--LYRLKDRLGP---------THEETFTELIRDEINSYKRLPLNLY---------QIQTKYR--DEKRSRSGL-------------LRGREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERCGLEFR---AIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSLYTPKKSHETQLDLEKIATPEVGTIAEVANFF---------------EVEPQRIIKSVLFIADEEPVMVLVRGDHDVNDVKLKNFLGADFLDEATEE--------------DARRVLGAGFGSIGPVNVSEDVKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDAFTKGIEIGHIFKLGTRYSDAM-----------------GATVLDENGREKSVIMGCGIGVSRLLSAIVEQNADERG-------------INWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVL---VDDRNERAGVKFADADLIGCPIRITVGKKAVD-GVVEVKIKRTGEMLEVRKEELESTLSILMNTTSE. 570
25 -18.1001qf6_A mol:protein length:642 THREONYL-TRNA SYNTHETASE  ali model follow..  11  23............................................................................................................................................................................................................................................................................................................................VALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDN--------GFYYDVDLDRTLTQEDVEALEKRHELAEKNYDVIKKWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVD-----MCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYR-DLPLRMAEFGSCHRNEPSGSL--HGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSEADLAVALEENNIPFEYQLGYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAISMER-FIGILTEEFA-----------------FFPTWLAPVQVVIMNI---TDSQSEYVNELTQKLSNAGIRV---KADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSRS.. 636
26 -17.6004p3n_A mol:protein length:415 Threonine--tRNA ligase, cytoplasmic  ali model follow..  14  1....................................................................MGSSSSGDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNALIEFIRS--EYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKELFALKPMNRELPLRLADFGVLHRNELSGAL--TGLTRVRRFQQDDAHIFCAMEQIEDEIKGCLDFLRTVYSVFGTRPEKFLGDIEVWDQAEKQLE-EFGEKWELNSGDGAFYGPKIDIQQLPIRFNLTYVSHDGDDKKRPVIVHRAISVER-MIAILTENYG-----------------KWPFWLSPRQVMVVPVGPTCDEY---AQKVRQQFHDAKFMA--DIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETIERLQQLKEFRSKQAEEE............................................................................................................................................................................................................................................................................................................................................................................................................................................................... 408
27 -17.6004hwo_A mol:protein length:411 Threonine--tRNA ligase  ali model follow..  12  2.............................................................................................................................................................................................................................................................................................................................................................................................................ARDKIGKQLDL-YHMQEEAPGMVFWHNDGWTIF-----RELEVFVRSKLK------EYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMF-------------------------------------------------------------------------------------------------------TTSSENREYCIKPMNCPGHVQIFNQGLKSYR-DLPLRMAEFGSCHRNEPSGSL--HGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGS---------------DEMWDRAEADLAVALEENNIPFEYQLGEGAFYPKILYDCLDRAWQCGTVQLDFSLPSSASYVGEDNERKVPVMIHRALAPVQVVIMNI---TDSQSEYVNELTQKLSNAGIRV---KADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSRS.. 397
28 -17.4003a31_A mol:protein length:471 Probable threonyl-tRNA synthetase 1  ali model follow..  10  5..........................................................QDKTHIDYAYELDITVKPDSRVPVFN-REFATFTGAGVPLFSLGGGPIRYALAEVLAK--FHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDIEGHEFAVKPMNLPLPFKVFEFGRVHRYEPSGSI--YGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFKSKEEWEGAEEALREAASRINEKYGIDIVELEGEAAFYGPKLDFINLPRRFRLYDVVREEFGIEEVYIIHRALSIER-FLGVYLEHRR-----------------RMPFTLAPIQFAVIAVKTGGREIEDLASSIAKGLLDKGFRV--AVKGSSKTGLSSDVRHIESTAKPANVFIGAKEVREKVLDVRVFDLESMKRRRLAIAYGDAADAVENLAAVAEE................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 448
29 -17.4002lw7_A mol:protein length:170 Histidine--tRNA ligase, cytoplasmic  ali model follow..  19  78.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QKKLLEERLKLVSELQDAGIKA--ELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQPLSI 169
30 -17.3004hwt_A mol:protein length:413 Threonine--tRNA ligase, cytoplasmic  ali model follow..  13  29....................................................................................................PKGAYIYNALIEFIRS--EYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKELFALKPMNRELPLRLADFGVLHRNELSGAL--TGLTRVRRFQQDDAHIFCAMEQIEDEIKGCLDFLRTVYSVFGTRPEKFLGDIEVWDQAEKQLE-EFGEKWELNSGDGAFYGPKIDIQQLPIRFNLTYVSHDGDDKKRPVIVHRAISVER-MIAILTENYG-----------------KWPFWLSPRQVMVVPVGPTCDEY---AQKVRQQFHDAKFMA--DIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKISGTVNIRTRDNKVHGERTISETIERLQQLKEFRSKQAEEE............................................................................................................................................................................................................................................................................................................................................................................................................................................................... 404
31 -16.2003ugq_A mol:protein length:460 Threonyl-tRNA synthetase, mitochondrial  ali model follow..  5.....................................................................................................................................................................................................................................................................................................................................................................................SSGLVPRGSHMASATKNASSATPATTSMVSQRQDL-FMTDPLSPGSMFFLPNGAKIF-----NKLIEFMKLQQKFKFGFNE-----VVTPLIYKKTLWEKSGHWENYADDMFKVETTD----------------------------------------------------------------------------------------------------EEKEEYGLKPMNCPGHCLIFGKKDRSYN-ELPLRFSDFSPLHRNEASGAL--SGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKGGSGAESNYFINFST-------PDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAFYPKLVTDHLRKTHQVATIQLDFQLPEDLKFKDQDNSYKRPIMIHRALNPYQAVIIPVNTKNVQQLDMCTAEPVPLNDWHFNV---DLDIRNEPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRERDNRKSFKLTMSQIWEKFIELEKNYK.. 454
32 -14.2001v95_A mol:protein length:130 Nuclear receptor coactivator 5  ali model follow..  13  8..........................................................................................................................................................................................................................................................................................................................................................PVDCSVIVVNKQTKDY---AESVGRKVRDLGMVV--LIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGTPQENMPQADAMVLVARNYER....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 107
33 -11.1004g85_A mol:protein length:517 Histidine-tRNA ligase, cytoplasmic  ali model follow..  13  3...........................................................................................................................................................................................................................................................................................GSEFELRRQMAERAALEELVKLQGERVR--------GLKQQKASAELIEEEVAKLLKLKAQLGPDESKQKFVLKTPKGTRDVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKL------IYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNIKRYHIA--------------KVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAE-CLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEY--------LTLFGIDDKISFDLSLARG------------LDYYTGV------------------------------------YEAVLLQTPAQAGEEPLGVGSVAAGGRYD---------GLVGMFDPKGRKVPCV---SIGVERIFSIV----------------EQRLEALEEKIRTTETQVLVASA---QKKLLEERLKLVSELWDAGIKA--ELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQP... 516
34 -11.0003qne_A mol:protein length:485 Seryl-tRNA synthetase, cytoplasmic  ali model follow..  7.....................................................................................................................................................................................................................................................................................FLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVDSQDEENNELVRTWLSHHEVLLRLDGYDPERGVRHRGYFLRNYGVFLNQA-----LINYGLSFLS------SKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVID------------------------------------------------------------------------------------------------------GEDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHKDAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSLGLPYRVVGISGELNNAAAKKYDLEAWFPFQQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYVHCLNSTLSATERTICCILENYQKEDG------------LVIPEVLRKY-------IPGEPEFIPYIKELPKNTTSVKKAK---GKNPKNTTSVKKAKG...................................................... 474
35 -10.9001qe0_A mol:protein length:420 Histidine--tRNA ligase  ali model follow..  15  70...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQK-------RYRQFNQFGVEAIGAENPSVD--AEVLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYTEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLRLLLALEEEGIELDIEENLDDQADRYAVKLLNHLRHNGIKA---DKDYLQRKIKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK........ 420
36 -10.4001wu7_A mol:protein length:434 Histidyl-tRNA synthetase  ali model follow..  10  27.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FKTAEEAAEAFGFRRIDFPSLEYLDLYR------IKSGEELLQQTYS-------------------------VDKGGREVTLIPEATPSTV---RMVTSRKDLQRPLRWYSFPKVWRYEEPQA-------RYREHYQFNADIFGSDSPEAD--AEVIALASSILDRLGLQDI--IIDRYHKISREEFVDQLRSAGIGEDGVSMIADLGTRGIDEMARITGKSSEEIARMAAVEDLLVRYDFSIVRGLTGIVFEAYDRSGQFRAILGGGR-LLLKRENVQIPREKKSVYICRVGKINSSIMNEYSRKLRERGMNV---TVEIMERGLSAQLKYASAIGADFAVIFGERDLERGVVTIRNMYTGSQENVGLDSVVEHLISQATLE... 428
37 -10.2003net_A mol:protein length:465 Histidyl-tRNA synthetase  ali model follow..  10  33.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGD----------------TGSEARALKFDQTVPLAAYI--ARHLNDLTFPFARYQMDVVFRGERAKD-------RFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAVNIGDFVIRINNLEKIGEAKVKLELEKEGINPEQTQKIIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELFCIDLAIARGLNYYTGTVYETTLIGHEALGS-TRLISRLLKA-TPAQVVVVNM---QDELMPTYLKVSQQLRQAGLNV---ITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRRLT..... 465
38 -10.1004g84_A mol:protein length:464 Histidine--tRNA ligase, cytoplasmic  ali model follow..  18  330.....................................................................................................................................................................................................................................................................................................PKGRKVPCV---SIGVERIFSIV----------------EQRLEALEEKIRTTETQVLVASA---QKKLLEERLKLVSELWDAGIKA--ELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 462
39 -9.9503hrk_A mol:protein length:456 Histidyl-tRNA synthetase  ali model follow..  44.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FDVFHATAKTFGFEEYDAPVLESEELYI------RKAGEEITEQMFN-------------------------ITKGGHRVALRPEMTPSLARLL--LGKGRSLLLPAKWYSIPQCWRYEAITR-------RRREHYQWNMDIVGVKSVSAE--VELVCAACWAMRSLGLSSKDVGIKIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEIAQRVGEEHEAVKELRQFYGDWVLFDASVVGIVFEGFDREGKFRALCGGGRYDNLVIVELLQEKRLLPDIPHVVDESMRPHALAVLRRLRDAGRSA---DIILDKKKVVQAFNYADRVGAVRAVLVAPEEWERGEVQVKMLREGTGKEEGGAERGFAVPL........ 446
40 -9.8803hri_A mol:protein length:456 Histidyl-tRNA synthetase  ali model follow..  44.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FDVFHSTARKFGFEEYDSPVLESEELYI------RKAGEEITEQMFN-------------------------ITKGGHRVALRPEMTPSLARQL--LAKGRSLLLPAKWYSIPQCWRYEAITR-------RRREHYQWNMDIIGVKSVSSE--VELVCAACTAMQSLGLSSKDVGVKKMEKLPREEVVAQLAAIGLESNVVDAISLKTIDEIAQRIGEEHEAVRELRDFITQIEAYFGDWVIFDASVVGIVFEGFDRDGNFRALCGGGRYDNL--PTAVPCVGFGFDLVIPFDETMRPHALSILRRLRDAGRSA---DIVFDKKKVVQAFNYADRIGALRAVLVAPDEWARGEVRVKMLREGAGREEGANERGIVLPV........ 446
41 -9.8104e51_A mol:protein length:467 Histidine--tRNA ligase  ali model follow..  95...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LNGENLTLRPENTAAVVRAA--IEHNMLYDGPKRLWYIGPMFRHERPQR-------RYRQFHQVGVEALGFAGPDAD--AEIVMMCQRLWEDLGLTGIKLEINSLEQHADKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGDVSRAHTINPRLVRGLDYYNLTVFEWVTDKLGAQGTGWAMGIERILELLKEEHLVPEQEGVDVYVVHQGDAAREQAFIVAERLRDTGLDVLHCSADGAGASFKSQMKRADASGAAFAVIFGEDEVTNGTASVKPGEKSVQQSVPVESLTEFLINAMVATAE. 457
42 -9.6404h2w_A mol:protein length:346 Amino acid--[acyl-carrier-protein] ligase 1  ali model follow..  1....................................................................................................................................................................................................................................................................................................................................................................................MGSSSSGLVPRGSHMNIAVLPNSPDTAPQIADPLDHLADKLFHSDGVYARTA---------LYESIVERLAALIT---SHREAGTEALRFPPVMSRAQLEKSGYLKSFPNLL-----------GCVCGLHGTEREINAAVSRFDAGGDWTTSLSPADLV-------------------------------------------------------------------LSPAACYPVYPIAAS--RGPLPKGGLRFDVAADCFRRE-----PSKHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLGLTFRVDYASDNNQRDQQLKFELLIPLRSEEQPTA-----MSFNYHREHFGTTWGIQDANGEPAHTGCV---AFGMDRLAVAMF----HTHGTDLSAWPAKVRDILGLQPHVAAGAHG..................................................................................................... 336
43 -9.5403err_A mol:protein length:536 fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA synthetase from Thermus thermophilus  ali model follow..  10  9............................................................................................................................................................................................................................................................................................QEPEVFHRAIREKGVALDLEALLAVDEQL-------HKQQEVIADKQMSVKEDLDKVEPAVIEAQNAV----------KSIKKQHLVEVRSMA----PAAVKLALESIALLLGESTTDWKQIRSIIMRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLEALVPLPPWPGAPVGGEEANREIKRVGGPPEFSFPPLDHVALMEKNGWWEPRISQVLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGDQVWAIAETTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFKDVRGLMRVHQFHKVEQYVLTEASASDRAFQELLENAEEILRLLELPYRLVEVTGDMGPGKWRQVDIEVYLP-RYRETHSCSALLDWQARRAN----LRYRDPEGRVRYAYTLNNTALATPRILAMLLENHQLQDGR------------VRVPQALIPY........................................................................................................ 520
44 -9.4702cim_A mol:protein length:522 SERYL-TRNA SYNTHETASE  ali model follow..  55.........................................................................................................................................................................................................................................................................................PEGQGAKVTEWKLGEDRIELTLQSGRYVRVHDAIFLAEALGKKYKIGIRGIEVESFIIKVPADHVPYGIQLELEVGEAEMKNRVPDRILTLLEEK----IEAAQYGAKAEHWNLLWQREPMEHPFKEDPTQAMMKEGWLKRGSSRGQWIHGPQSARIFRTFEKIVLEE--LEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEK-------------------------------------------------------------------------AEPIGGMCYAQCPPFWMYVAG-ETLPNEEIPVKVFDRGTSHRYESGGIH---GIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDILDIEWRKARVTLAEENTVGTTDYEACLPYRGPDGEWLEF-QNVSINGDKYPKGFNVKLQSGDELWSGCS---GVGLERWAAVFL----------AQKGLDPANWPEEFRNRVGEMPKGIRFL................................................................................................. 516
45 -9.2803mey_A mol:protein length:346 Bll0957 protein  ali model follow..  1....................................................................................................................................................................................................................................................................................................................................................................................MGSSSSGLVPRGSHMNIAVLPNSPDTAPQIADPLDHLADKLFHSDGVYARTA---------LYESIVERLAALIT---SHREAGTEALRFPPVMSRAQLEKSGYLKSFPNLL-----------GCVCGLHGTEREINAAVSRFDAGGDWTTSLSPADLV-------------------------------------------------------------------LSPAACYPVYPIAAS--RGPLPKGGLRFDVAADCFRRE-----PSKHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLGLTFRVDYASDVSQKQQQLKFELLIPLRSEEQPTA-----MSFNYHREHFGTTWGIQDANGEPAHTGCV---AFGMDRLAVAMF----HTHGTDLSAWPAKVRDILGLQPHVAA......................................................................................................... 332
46 -9.2602dq0_A mol:protein length:455 Seryl-tRNA synthetase  ali model follow..  10  3........................................................................................................................................................................................................................................................................................................................................................................................DIKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTETKLKEINRLRHERNKIAVEIG-EPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITDENDNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILEWKPKLHVDLLEILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRLIEKYMVRRFVEEGSTSFEDFEDVIYKVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIPYRVVNITGDLGYVAAKKYDIEAWMP-KFREVVSASNCTDWQARRLN----IRFRDRTDEKPRYVHTLNTAIATSRAIVAILENHQEEDGT------------VRIPKVLWKY........................................................................................................ 437
47 -9.2205e3i_A mol:protein length:438 Histidine--tRNA ligase  ali model follow..  10  75..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GNPPESLTLRPEGTAGCVRAL--VEHNLLRGATPRVWYMGPMFRYEKPQK-------RYRQFHQFGVETFLNTLGETDERTEYRNALVAFLNQRRLTTNPLRILDSKIESTQKILE----------NAPKLHDFLKEDSLSHFQQLQDYLTAAGIKFVINQKLVRGLDYYNKTVFEWTTTALGSQGTVCAGGRYDERLLLLLEQVQAEIVRDCEAFLVAEPAYQSKALVLAEQLRDQLEAA-IRIKTGSQGSMKSQMKKADQAGAVYAIILGEREWEAQQLAVKELATAEQSQVALAELVPFLIEKFT..... 431
48 -9.0704rdx_A mol:protein length:423 Histidine--tRNA ligase  ali model follow..  12  73...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RGGRSLTLRPEGTAAMVRAYLE--GMKVWPQPVRLWMAGPMFRAERPQK-------RYRQFHQVNYEALGSENPILD--AEAVVLLYECLKELGLRRLKVKLSSVGDPEDREALSEDSKERLELNPMRILDSKSERDQALLKELGVRPMLDFLGEEARVPYELEPALGLDRTAFEVHHEEIGAQSALGGGGRYDERVALALEAE-KGPDLYLIPL---TEEAVAEAFYLAEALRPR----LRAEYALAPRKPAKGLEEALKRGAAFAGFLGEDELRAGEVTLKRLATGEQVRLSREEVPGYLLQALG..... 423

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Awobuluyi M, Yang J, Ye Y, Chatterton JE, Godzik A, Lipton SA, Zhang D. Subunit-specific roles of glycine-binding domains in activation of NR1/NR3N-methyl-D-aspartate receptors. Mol Pharmacol. 2007 Jan;71(1):112-22. Epub 2006 Oct 17.