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Query: 1eqr_A mol:protein length:590 ASPARTYL-TRNA SYNTHETASE, from PDB1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQVVKKAENNLast
1 -135.000PF00152.20; SYDND_NEIMB/118-567; tRNA synthetases class II (D, K and N)  ali follow..  59  1....................................................................................................................SENVRLTNRVIDLRRPVMQRNLRLRYQVAMGVRRYLDAQGFIDIETPMLTRSTPEGARDYLVPSRVHPGEFFALPQSPQLFKQLLMVAGFDRYYQITKCFRDEDLRADRQPEFTQIDLETSFLNEDEIMDITEGMAKQVFKDALNVDLGDFPRMPYSEAMFYYGSDKPDMRINLKFTELTDLMKTEEFKVFRGAADMKGGRVVALRVPNGAEFSRKEIDEYTKFVGIYGAKGLAYIKVNDSNGEDSGLQSPIVKYLSENALKEIIARTGAQNGDIIFFGADKAKVVNEAIGALRIKVGLEHGKYFTDEWKPLWVVDFPMFEYDEADRYVAVHHPFTAPKEGHEDLMVSDPANCLARAYDMVLNGWEIGGGSIRIHRADVQEKVFAALKISPEEQQEKFGFLLDNLKFGAPPHGGLAFGLDRLVTLMTGAESIRDVIAFPKTQ................................ 450
2 -10.300PF04076.13; YGIW_ECOLI/25-127; Bacterial OB fold (BOF) protein  ali follow..  18  24....TVESAKSLRDDTWVTLRGNIVERISDDLYVF---KDASGTINVDIDHKRWNG----VTVTPKDTVEIQGEV----------DKDWNSVEIDVKQIR.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 102
3 -9.350PF17659.1; RADX_RAT/2-841; Family of unknown function (DUF5521 topsan)  ali follow..  11  244...............SKLRYYGKPNKKMIEPYQTYLEVADSSGMVSVIMWNALCP--EWYKSLRVGLILLLQDSVKKSYPLRIQPDPVDPQMKLISTMEICLNLRDPLPQRSKKKENSEDFWSYRWIHITDGTSEQPFIVQSTSQPEVFENIYPMTYFVC-TQLKVVRNNSQVPKLLYLTTTNESRVLITGHRGQPYTYDTKAKKIIQWIK------------TKTNLEAKNTVIGGYYPYPPVPETFSKYSRFIKAESLLTTISEVRKVI--EDLQYREQKRIAIQGIITAIKYIPYNHSAKSAPASETLQNASPPSTSQAAAKEGHYHERGSKRSQDDRPMDSLPMVLSLCAKRKILQGPTANPVPVPQPHSSAQMKGNKPNIPSRENSTANATGKSKRIINDRWESQLWRDKKFSLRDHLHYGHVDPESIPRFILGHEKFLTQQFNSQPAPPEGKPPKLDEFQSARSLGHFEVTILG---------LNHEIAIDVAFLPMYSPEDVETSQIDTFLTCMNYSCKAVAGAAADLDHIIGILLGNNKV-EVCL..................................... 836
4 -9.040PF01409.20; SYFA_BACHD/92-341; tRNA synthetases class II core domain (F)  ali follow..  19  20.............................................................................................................................................TATITEVEDLFIGLGFSVAEGPQIETDYYNFEALNL-PARDMQDSFYF-SPVQARTMEKYKGKGPIKIICPGKVFRRDDDDATHSHQFMQIEYVDHGVRMSDLKGVLQAFAKS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FFGEERSIRLRPSFFPFTEPSVE--VDVSCGICHGDGCRVCKQTGWIEILGAGM------VHPRVLEMSGFNPNE--------YSGFAFG--------MGVERLSMLKYGIDDIRHF....................................... 239
5 -8.490PF16100.5; I3IYQ1_ORENI/15-142; RecQ-mediated genome instability protein 2  ali follow..  14  38...............SLVWMQGTVLEVQQDRDTVLLM--DETGTFVVQGVNNIPKG---KPCLSQGKYVMVMGIIQA-----------SPEPVIRAVKMADLSELAALHRRMWKLEVDDLQ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 128
6 -7.830PF13393.6; G2IXI8_PSEUL/10-315; Histidyl-tRNA synthetase  ali follow..  10  2..................................................................................................................................ADILPATARQVESAKAAMLELFRTAGYELVLPPLISEGDSALDIKTFKLDDHLSGRQLGLR--ADITPQVARIDAHLRLCYAGSVVHARPSGLMSSREPLQVGAELGIEADLEIIELMLATLRQV............................................................................................................................................................................................................................................................................................................................................... 143
7 -7.110PF08661.11; Q7Q0T3_ANOGA/1-114; Replication factor A protein 3  ali follow..  16  12......GALMKRHVGQPISIHLKVERADDGCKSFSGKSTDG-VNVQVQLSDPL--------NGVCSGWVEVIGIA-------------APNDTVRGKEIITYFNSGEKTESFDDGHNMLCTLMSVCKEP............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 113
8 -7.020PF16814.5; A1_BPMX1/147-328; Read-through domain  ali follow..  14  5.............................................................................NPDPPLEPPPGTGSYTCPFRIWDLSSIYEAANSSHSWDIYNAVELSPRKFDVTLDDLLGNTDWRGRLRYTTFRGSRGNGYIDLDATSLMQDEYLTSSKYLVREGKRPGAFFVYLKSINAYCSLSDITAYHSDGVVVGFWRDPSSGGAIPFDFSEFD..................................................................................................................................................................................................................................................................................................................................................................... 168
9 -6.920PF10451.9; Q6FM89_CANGA/3-245; Telomere regulation protein Stn1  ali follow..  10  55...............RRLKFVGTVIGVKKGDDYAVIHLDDSSDSSILKCVNQLNSFGININAGFIGSRVEVCGVYNTEFN------------ELEVGFIGVLPST----------LFSEIEHWRKCCLLLRMPDDLTDEELKASGIGDDEMQDGRDSPLDEYFSTPPQNKAQFIEKLVLRDVKDKLEITSPDPVRNESISVV----------------DDTCDNTTLGSNTIDLR................................................................................................................................................................................................................................................................................................................................................................... 243
10 -6.340PF01656.23; P72976_SYNY3/5-270; CobQ/CobB/MinD/ParA nucleotide binding domain  ali follow..  10  10.............VGKTTLTVATCLAKYFQKRVLVLDLDSQISATLSLMAPHDFAAIRKKGKTLSYLLLDIFDIICPEICQIEGLELIPGDIELYDEYLVS-----------EKLHQAAIATENPNFETVWNKFEGTL-----IKEMLAPVLEEYDFVILDCALLTRSGIAASDFYLLPAR-----------------EPLSVVGMQLLERRIEKLKESHKASDDPLNINLIGVVFILSGGGLMSRYYNQVMRRVQTD............................................................................................................................................................................................................................................................................................................................................ 239

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 8 4 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;