current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: 1v7o_A mol:protein length:165 alanyl-tRNA synthetase, from PDB1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .
# Score Template Links and tools%idFirst MYSIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIEDWNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFELLELENPSLELast
1 -14.200PF07973.14; SYT2_BACSU/172-221; Threonyl and Alanyl tRNA synthetase second additional domain  ali follow..  23  1......................................................................................................ITLYQQGEF-VDLCRGPHLPSTGMIKAFKLTRVSGAYWRG................. 39
2 -7.860PF14591.6; F2KTB1_ARCVS/1-139; AF0941-like  ali follow..  20  24...............................................AKTVDEAMDDIKRVSKDLRDPERVAEIFRMDSEYIVHVFMAGGMTEEEAEDCLKKLKVYALSQLQ------EHYNLVIQLLKDTEKKVSEAIEKTIEEIQFELPESTKDEIK 129
3 -6.300PF05337.11; CSF1_HUMAN/41-180; Macrophage colony stimulating factor-1 (CSF-1)  ali follow..  10  1...............................................HMIGSGHLQSLQRLIDSQMETSCQITFEFVDQEQLKD........................................................................... 37
4 -5.820PF00416.22; RS18_RAT/14-142; Ribosomal protein S13/S18  ali follow..  12  13..............IAFAITAIKG--VGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHR--RVRGQHTKTTGR................................. 128
5 -5.740PF16437.5; R6KJF4_9BACE/34-172; Domain of unknown function (DUF5034 topsan)  ali follow..  12  2....................................................TGIGKVEHLDNAVAPVGGVVSRQAYMLREYEKEIVEGTYYEYILTDTIANIQIISLTAYDESHPAGTDVNE.................................... 81
6 -5.640PF04199.13; B9JI03_AGRRK/6-186; Putative cyclase  ali follow..  54VERVTLTTHNGTHLHSTMDHGLPALKIDEIPLEWCFQPGVKLDFRHFEDVTAADVEAELERIGHTLKPLEIVVVNTMGYEATMYLLE-------------RGVKVTGTDGWSWDA............................................ 181
7 -5.500PF06438.12; Q4K5N8_PSEF5/1-205; Heme-binding protein A (HasA)  ali follow..  79........SNPSHTLWGSVDTILGDTLAGGSGSNYNLVSQEVSFTLNSLKEEGRAGEVHKVVYGLMSGDSSALAGEIDALLKAIDPSLGVAHVNPAAAAAADVGLVGVQD................................................. 196
8 -5.430PF10567.9; G8ZNI9_TORDC/169-480; RNA-recognition motif  ali follow..  10  2..........................................................................................YRVLPKGNDEFRTRSLLFENVDGSI---TNFTNYGPVESVYLFKSEGD--HVSILLSFFSKAICLDFYN 71
9 -5.400PF16549.5; F7YLC1_VIBA7/23-126; Type II secretion system (T2SS) pilotin, S protein  ali follow..  1..................................................QQKYLEAVASNRANVISAELPLEFGPLSVMRASAKGSTVEIMMIYNEDQKGAKPIDQVKTSINTYCSDSTTRANLDLGLTYRIKMRNTRGQLVVDQFIS.......... 100
10 -5.350PF09275.10; TOX4_BORPE/43-152; Pertussis toxin S4 subunit  ali follow..  7VKTNMVVTSVAMKPYEVTPTRMLVCGIAAKLGAAASSPDAHVPFCFGKDLKRPGSSPMEVMLRAVFMQQRPLRMFLGPKQLTFE------------KPALELIRMVE--------CSGKQ....................................... 107

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 2 5 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Jaroszewski L, Godzik A. Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics. 2003 Oct 10;4(1):46.