current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: 5Y8X Entity 1(prereleased), from PDB1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .
# Score Template Links and tools%idFirst MRRLAFLVVAFCLAVGCFFSPVSKAEGVMSGGDGDKVAVGKDGMVATAHPLASKIGAEVLKKGGNAIDAAIAIQYALNVTEPMMSGIGGGGFMMVYDGETRETSIINSRERAPEGAKPDMFLDEDGKVIPFSERSRHGNAVGVPGTLKGLEAAHKKWGTKKMEDLISPSIKLTEEGFPIDSVLADAIKDHQDKLSKTAAKDIFLPDGEPLKEGDILVQKDLAKTFKLIRKEGSKAFYDGEIGRAIADVVQDFGGSMTPDDLSRYEVTTDKPIWGEYHGYDIASMPPPSSGGVFMLQVLKLIDDFHLSQYDPKSFEKYHLLAETMHLSYADRAAYAGDPEFVDVPLRGLLDPDYIKERQKLISLDSMNRDVKEGDPWKYEEGEPNYEIVPQPEDKTIGELast
1 -86.000PF01019.21; YWRD_BACSU/24-520; Gamma-glutamyltranspeptidase  ali follow..  29  2.........................................................RILDKGGNAFDAAVAVSACLAVVYPHMTGLGGDSFWLTFHQETKAVKVYNGSGRSGKNVTRDVYKGKSAIPLRG-----IDSAITVPGMVDSWDAVLKEYGRLSLADVLEPARDYAQNGFPVSADQCRHTEKNIELLSTPYTADIFTRRGKAPVPGERFVQKELADSLNLIAEKGRSAFYEGDLAQRIVSHLQNNGSYMTIDDFKAHRGEWAAPVSSDYRGYSVYQAPPNSQ-GFTGLLTLNILENYDFTQIEHGSFEYYHVLVEALKKSFLDRDAVLTDPAFADIPLERLLDKRYAKQLAEEIGYLAIPAESRP------VGSDTAYAAVIDADGNAVS. 330
2 -5.990PF12681.7; Q8TUF9_METAC/12-132; Glyoxalase-like domain  ali follow..  5......................................................................................................................................................................................................................LIVANNMEISRN---------FYEKVL------------DQKVQYDFGENVSFEGGFHLKSHFSDLININKDIAQKSNNSELYFEE-ADLDSFLQKLKDIDSIEYVHGLKEQPWGQRVIRFYDPDMHIVEIGEPME................................................ 118
3 -5.960PF01512.17; A1U014_MARHV/14-154; Respiratory-chain NADH dehydrogenase 51 Kd subunit  ali follow..  17  1..............................................................................VRNAGVVGAGGAGFPSVKIQARADVLIANGAECEPLLYKDQTVIQRFSAEL-------------LQGMALLMEQTGASRGVIAIKEKHQDSISHIEPNIELKQMRNTYPAGDEYELVYEITGNRIPAGGLPKDIGVLVQN---VETLVNIAR........................................................................................................................................................................ 141
4 -5.670PF01795.19; RSMH_BACSU/1-310; MraW methylase family  ali follow..  14  6.................................................TVLLRETVDGLKPDGTYVDCTL--------------GGAGHSTYLLQQSEKGRLIAFDQDDTALQHAKEVL-------------SDYKGQLILIKSNFRYLKEYLNEQGVTEVDGILSPQLDTPERGFS---------------YHHDAPLDMRMDQSATLSAKEVVNEWRYEDLVRIFFKYGEEKFSK-QIARKIEEA-RMKSPIQTTGQLVDARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQAIEVLKP------GRVSVITFHSLEDICKTTFKEKSSLPELPPGLPVPELKLITRKPITASQEELEENNRARSAK........................... 303
5 -5.670PF00811.18; W5KU48_ASTMX/69-194; Ependymin  ali follow..  6...............................................................................................................................................................................................................................RADVLLLYKEGVMYT----------INREEKTCAKSELKDTFHPMEIPDNATLLGQVVLGSFSAPGEGLLVNSWMGEMPLLEGIHTHTLAHLRVDQVSLINQFYFFNIVVGIKDPSSLTPP...................................................... 123
6 -5.550PF17330.2; G8ZUS9_TORDC/26-123; SWR1 chromatin-remodelling complex, sub-unit Swc7  ali follow..  12  4...............................................................................................................................................................................................................................................................LDLAALLK-EPIVDKEVLTQFQNHKLVKMYAPELCNVHLRLLKSLVADIFMTGTPGDETHDDTTVITLANYYYNQRIEELTQDQLPRI....................................................... 90
7 -5.270PF07900.11; Q8TH36_METAC/30-238; Protein of unknown function (DUF1670 topsan)  ali follow..  10  2.............................................................................................................................................................................MQDYSFPRAVCRSLSELFISYIDLYFSSIFHGVSKDVPPGVPVNEMNLVSIITIYDPEDCKVKNQRELLDRISNEAHTQGALLTQADIAILLGESTKTISRHIEALEENGELVPTRGGPGVSHKKRILELYEIERKTQHSGEAIRYVKDFARILVLTEEGFEDEELRIITGLSEKTIQEYKE........................................... 208
8 -5.150PF03574.15; K9PVK6_9CYAN/56-204; Peptidase family S48  ali follow..  18  1..........................................................................................................................................................................................................YQEQDGNLRMTGHLHHIE-PKRVKVIVREIESALREGQLLKMLGSQEPSYLIELPYVWLEHYPLKAGKSLSPEHRDYFEQRLPQPQAQVISSLQFSDLIEFLHQRSQEKFPSDRRMPLSEALAEHIKRRLLHAETVMRLDNP...................................................... 149
9 -5.130PF18100.1; A0A0N4VSL4_HAEPC/24-140; Phosphodiesterase 4 upstream conserved regions (UCR)  ali follow..  47...............................................................................................................................................................................................................................................................................................................................................LPENVVTCAQETLEELDWCLDQLETIQTHRSVSEMASSKFRKMLNKELSHFAESSKSGTQVSK 109
10 -4.830PF10115.9; Q169D0_ROSDO/2-92; Transcriptional activator HlyU  ali follow..  13  23..................................................................................................................................................................................................................................................................................THEGFLITATPMAEGPSYRICAIIEKEIDGETRSHKLIRSDMVQGLEDAQAASFRKAKQVIGDRIF.......................................................... 91

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 9 1 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Database searching by flexible protein structure alignment. Protein Sci. 2004 Jul;13(7):1841-50.