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Query: 5YM9 Entity 1(prereleased), from PDB1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst KLESPGFMVHKKLKSMSQSYGVMMTGVPAEVLGQMQAERSIPSINKTGNLKQQIAKEVSKVCHMMTEPTQSCGQASNDVCELLLGKIEAEKFHFTKYEALSADGDNLKNVLENTAPSSTNLLIRFEIDREDPPIVLVKTKNENFNPETAVKNKIYLLENKLYFIDKMGNLFNLGPGKKKCTQLFNAIGDSAEYSLCDPFVLEEPEKPEDFAISEIVDIFNEQKERFDFWIGSHSFTIYIPQTLGESPRQFYPYQAYFGSHTLQDWFVSDKDEYLSRIGIDKYIEKLAVLGKTTNTKERSDIYAEFFSKRGREAFFCAHLNEKRQPLRVKFKITEINPELALKNLQETQEFIDTHPGENPSDKVENYRNRAKLAMTEHLESLLDILast
1 -6.970PF03076.14; GP3_EAVBU/1-160; Equine arteritis virus GP3  ali follow..  21  25.....................................................................................................................................................................................................................................VGSNNTTICMHTTSDTSVHLFYAANVTFPSH-FQRHFAAAQDFVVEYAGVTMLVHLFANLVLTFPSLVNCSRPVNVFANASCVQVVCSHTNSTTGLGQLSFSFVDEDLRLHIR.......................................... 140
2 -5.600PF05774.11; HEPA_HHV8P/539-669; Herpesvirus helicase-primase complex component  ali follow..  12  12......................................................................................................................................................................................................ALNMPPDTSWLQLIEEVIPLYFHRRRQTSFWLIPLSHCEGIPVCPPLPFDCLAPRLFIVTKSGPMCYRAG------VDVNYLFYLEQTLKAVRQVSPQEHNPQDAK................................................................................ 115
3 -4.950PF04159.13; VNB_INBLE/1-100; NB glycoprotein  ali follow..  18  10..............................................................................................................................................NINPITHIRGSIIIT-SLIVILIVFGCIAKIFINKNNCTNNVIRVHKRIKCPDCEPFCNKRDDISTPRAGVDIPSFI..................................................................................................................................................................... 88
4 -4.930PF14465.6; H3BF97_LATCH/376-475; NFRKB Winged Helix-like  ali follow..  17  2................................................................................................................................................................................................FSLLQEIFLMEGPATLSVIEEKVLEWQSSPASTLNCWYSSHSALQFLTAGMAALTPGFTPYVDYREKTQQWKWIGPDAEKDISAL........................................................................................................... 96
5 -4.910PF04234.12; E9T7U6_RHOHA/32-125; CopC domain  ali follow..  14  1.........HSAVIASTPDNGAQIATAPERVSLQFNEAL------------QEKFASLTVVGPDGNLWSKGDPTIQGDTASVPLEGLGPVGEYTIAFRVTSADGHPVSGTRV................................................................................................................................................................................................................................................................................ 91
6 -4.740PF09418.10; G8JUI1_ERECY/132-590; Protein of unknown function (DUF2009 topsan)  ali follow..  16  88......FEIGRRYKRMRDTFGKLCYMVMDSRLPQIEEQLEFHLYKPIKTVQSYLSDP-DKLLLYATSNIDPKGKSRAEINRLVRQKELSVEELVSKYCTSVFSREDIRQVLYSIGDYNAYINA-----NRKPIVSMLKRLDRFCEPEIISKYPIYVQQSLMLWSVIQRKMIQLWYIADK-------LFDGSSYKLVSTGQGLNRVKPCPALYEEMYNILSECRAKCGGWVGSHLGDDAVPNAL-----------FFLDKYTQVPNILIPFEQTLSNIALKNYIDQKYGSIEDLKLTILQDAFAHMFDGSGADNFYMSG.................................................................. 423
7 -4.730PF05215.13; Q60193_9MOLU/2-236; Spiralin  ali follow..  11  1..........KRLLSILAVFGVSAVGTTSVIACNKTESNNLSRVTDAIDAAKVTKEEIKNGLNPNVLKAVQGVVKTAQATDFVYEVYADNQGKALDTVNLKAGNVDVYVQITPAKDKSGYIKVTLPKAKAD----ISDVTVPEKTVGIKVGNPQAVTKNELEAVNKDADLAQ---------AVLNAIKAKVSDVEASEFAITNNGEVGDYSAPKTVEVTVKANDSSAKITGQFKFNAKVTATTA............................................................................................................................................ 235
8 -4.730PF05323.12; Q9Q8J0_MYXVL/1-111; Poxvirus A21 Protein  ali follow..  17  16............................................................................NIIVPAISEKMRKEYDAYLKYAHLKKDAVCVDDRLFTYDFKTSGVVAKMFIDSNGKPLPCSRTRDIRSNNAIYCDNDENVLDFRKSCSKAYLDLF..................................................................................................................................................................................................................... 110
9 -4.610PF02988.15; PLIA_ELAQU/20-103; Phospholipase A2 inhibitor  ali follow..  16  1...........................................................RSCEICHNVGNDCGYDYVEECH------SPEDQCGKVLLEISSAPLSIRSSHRNCFSSSL......................................................................................................................................................................................................................................................................... 54
10 -4.130PF12542.8; M7XE83_RHOT1/65-160; Pre-mRNA splicing factor  ali follow..  18  3..........................................................ERVDWMYAAPAEGNGPNPDELEAYLLGKKRVDKLLKGNEEKLLAQPTEEVPGGSFQSLQNANTSRDTASKIREDPMLAIKRQEQL-DP.............................................................................................................................................................................................................................................. 96

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Database searching by flexible protein structure alignment. Protein Sci. 2004 Jul;13(7):1841-50.