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Query: 5YTA Entity 1(prereleased), from PDB1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ATLKEKLIAPVAEEETTIPNNKITVVGVGQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGVHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVQGMYGIENEVFLSLPCVLNARGLTSVINQKLKDDEVAQLKNSADTLWGIQKDLKDLast
1 -52.500PF00056.23; MDH_CHLAA/3-142; lactate/malate dehydrogenase, NAD binding domain  ali follow..  37  1....................KKISIIGAGFVGSTTAHWLAAKELGDIV-LLDFVEGVPQGKALDLYEASPIEGFDVRVGTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSGFPKERVIG............................................................................................................................................................................ 140
2 -48.000PF02866.18; MDHC_MOUSE/156-331; lactate/malate dehydrogenase, alpha/beta C-terminal domain  ali follow..  18  1..................................................................................................................................................................TRLDHNRAKSQIALKLGVTADDVKNVIIGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAIADHIRDIWFGTPEGEFVSMGVISDYGVPDDLLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELTEEKETAFE 174
3 -28.900PF02056.16; CHBF_ECOLI/6-188; Family 4 glycosyl hydrolase  ali follow..  17  1.....................KVVTIGGGSSYTPELLEGFIKRYHEELWLVDVEGGKPKLDIIFDLCQRMIVPMKLYKTLDRREALKDADFVTTQLRVGQLPARELDERIPRTIPVIFDIVKDVEELCPNAWVINFTNPAGMVTEAVYRHTGFK--RFIGVCNI--PIGMKMFIRDVLML........................................................................................................................................................ 183
4 -11.800PF03721.14; UGDH_CAEEL/10-205; UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain  ali follow..  11  1....................SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPVFAARGRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKG--APDLKYVESVSRTIAQYAGGPKIVVEKSTVESIGCILREAQKNNENLKFQVLSNPEFLAEGTAMKDLANPD------VLIGGESSPE....................................................................................................................................... 185
5 -9.120PF02737.18; Q2YR99_BRUA2/5-183; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain  ali follow..  14  1.....................TVGIIGAGQMGSGIAHVCALAGY--NVLLHDAAPDRLEKGIATINGNMARQVASGKLQEESMEDLAGVDLAI--------------EAATEDETIKRKIFAQLCPVLNPEAIL-ATNTSSISITRLASTTDRP-ERFIGI........................................................................................................................................................................... 135
6 -8.830PF00670.21; SAHH_DICDI/191-351; S-adenosyl-L-homocysteine hydrolase, NAD binding domain  ali follow..  13  4GCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSL--SKMGARVLVTEIDPINAETAAPLSNIFVTTTGCRDIVRGEHFAVMKEDAIVCNIGHFDCEIDVAWLNANAKKDTVKPQVDRYTLANGVHIILLAEGRLVNLGC............................................................................................................................................................................................ 158
7 -8.640PF03435.18; Q94BZ0_ARATH/41-165; Saccharopine dehydrogenase NADP binding domain  ali follow..  21  1......................VLVLGGGRVGGSTATALSKLCPELKIVVGGRNREKGEAMVAKLGENSEFSQVDINDAKMLETSLRDVDLVVHAAGPFQQAPRCTV................................................................................................................................................................................................................................. 86
8 -8.390PF01113.20; DAPB_VIBCH/2-125; Dihydrodipicolinate reductase, N-terminus  ali follow..  14  2.....................RIAIAGAGRMGRNLVKATHQNPLSELGAGSERPESSLVGV--DIGELCGIGKQGIVLVDNLEQAVEQFDVIISTLANLALCEQHGKKLVIGTTGFTDAQRQTIEQAAKKIPIVMAPN.................................................................................................................................................................................................. 123
9 -8.200PF03807.17; Q21544_CAEEL/2-98; NADP oxidoreductase coenzyme F420-dependent  ali follow..  14  1.....................KIGFIGAGKMAQALARGLINSGRIDNIIASSPKRDEVFLDQCK--------ALGLNTTHDNAEVVQKSDVVFLAV----------------KPVHVSKVASEIAPALSKEHLVV..................................................................................................................................................................................................... 92
10 -8.170PF07991.12; ILVC_METAC/15-178; Acetohydroxy acid isomeroreductase, NADPH-binding domain  ali follow..  11  1.................LKDKTIAIMGYGSQGHAHARNLHESGL--NVVVGLRKGSSSWAKA----------ESDGLKVMTVEEAAKAADVIMILLP---------------DEKQASVYYSQIEPSLEAGNALVFAHGFNIH............................................................................................................................................................................................. 99

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24