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Query: 4gn4_B mol:protein length:108 OBody AM2EP06, from PDB1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst AVYPKKTHWTAEITPNLHGSEVVVAGWVAHLGDYGRVKIVKVSDREGGAAVPVYLERGKTPDHLFKVFAELSREDVVVIKGIVEASEQYGSATGVEIFPSEIWILNKALast
1 -57.700d3nema1 b.40.4.0 (A:1-102) automated matches {Thermococcus kodakarensis [TaxId: 311400]}  ali model 3D-neighbors follow..  38  2....YRTHYSSEITEELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITA--PKKKVDPELFKLIPKLRSEDVVAVEGVVNFTPKA--KLGFEILPEKIVVLNRA 101
2 -57.600d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}  ali model 3D-neighbors follow..  25  2....RRTHYAGSLRETHVGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVAHPA-----SPAYATAERVRPEWVVRAKGLVRLRPEPNATGRVEVELSALEVLAEA 103
3 -55.100d1x54a1 b.40.4.0 (A:1-104) automated matches {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  25  2....IEKVYCQEVKPELDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGIVQAVV--AKNVVGEETFEKAKKLGRESSVIVEGIVKADERA--PGGAEVHVEKLEVIQAV 101
4 -47.900d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  16  22....KRVKFVDLDEAKDSDKEVLFRARVHNTRQQGALAFLTLRQQASLIQGLVKANKGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPITVQNLEIHITKIYTISET 130
5 -42.500d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}  ali model 3D-neighbors follow..  22  4........LVRDLK-AHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGL------------KLPLPESALRVRGLVVENAKA--PGGLEVQAKEVEVLSPA 88
6 -28.100d3a74a1 b.40.4.1 (A:4-145) Lysyl-tRNA synthetase (LysRS) {Geobacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  20  22DPFGKRTHKAEELFELYQQIEVAVAGRIMTKRGMGKAGFAHIQDVTGQIQIYV--RQDDVGEQQYELFKISDLGDIVGVRGTMFKTK----VGELSIKVSSYEFLTKA 136
7 -27.200d4ycub1 b.40.4.0 (B:72-216) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  29....HVDISLTDFIQKYTDITLKVAGRIHAKRASGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTK----KGELSIIPYEITLLSPC 138
8 -24.100d6aqga1 b.40.4.0 (A:9-153) automated matches {Mycobacterium ulcerans [TaxId: 362242]}  ali model 3D-neighbors follow..  22  27....ERTHTLAEIRASATEDIVGVAGRVVFARNTGKLCFATLQDGDGTQLQAMISLDEVGRESLDRWKADVDIGDVVYVHGTVISSR----RGELSVLADSWRMAAKA 134
9 -23.800d5elna1 b.40.4.0 (A:46-193) automated matches {Cryptosporidium parvum [TaxId: 353152]}  ali model 3D-neighbors follow..  14  26....KISMSLPAYALKYKDTTLSLSGRVTSIRSSSSLIFYDIFCEEQKVQIIANIMEHDISTGEFSVSSEIRRGDVVGFTGFPGKSK----RGELSLFSKSVVLLSPC 136
10 -14.200d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  18  26........TVESAKSLRDDTWVTLRGNIVERISDDLYVF---KDASGTINVDIDHKRWN---------VTVTPKDTVEIQGEV-----DKDWNSVEIDVKQIRKV... 106
11 -12.500d2pi2a_ b.40.4.3 (A:) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  32...................SQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTS---SENTVVPPETYVKVAGHLRSFQNKK-----SLVAFKIMPLED. 111
12 -11.100d2pi2e_ b.40.4.3 (E:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13..........AGMLAQFIDKPVCFVGRLEKIHPTGKMFILSDGEG-KNGTIELMEPLDEEISGIVEVVGRVTAKATILCTSYVQFKEDSH---DLGLYNEAVKIIHD. 107

FFAS is supported by the NIH grant R01-GM087218-01
1 2 9 7 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.