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Query: 5VMA Entity 1(prereleased), from PDB1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSNKERFLTLYHQIKSDANGYFSPEGIPYHSIETLICEAPDYGHMTTSEAYSYWLWLEVLYGHYTRDWSKLEAAWDNMEKYIIPVNEDGNDEQPHMSAYNPSSPATYASEKPYPDQYPSQLSGARPAGQDPIDGELKSTYGTNETYLMHWLLDVDNWYKYGNLLNPSHKAAYVNTFQRGQQESVWEAIPHPSQDDKSFGKPNEGFMSLFTKENQVPAAQWRYTNATDADARAIQAIYWAKELGYNNSTYLDKAKKMGDFLRYGMYDKYFQTIGSGKQGNPYPGNGKGACHYLMAWYTSWGGGLGDYANWSWRIGASHCHQGYQNPVAAYALSSDKGGLKPSSATGASDWEKTLKRQLEFYVWLQSKEGAIAGGATNSWNGDYSAYPAGRSTFYDMAYEDAPVYHDPPSNNWFGMQAWPMERVAELYYIFVKDGDKTSENVQMAKSCITKWVNYALDYIFIGSRPVSDEEGYFLDDQGRRILGGTNATVATTSAPGEFWLPGNIAWSGQPDTWNGFQSATGNPNLTAVTKDPTQDTGVLGSLVKAFTFFAAATKLETGNYTALGVRAKDAAAQLLEVAWNYNDGVGIVTEEEREDYDRFFKKEVYFPNGWNGTFGQGNQIPGSSTIPSDPQRGGNGVYTSFADLRPNIKQDPAWSSLESKYQSSFNEATGKWENGAPVFTYHRFWSQVDMATAYAEYHRLINLELast
1 -163.000d4jjja_ a.102.1.2 (A:) automated matches {Thermobifida fusca [TaxId: 2021]}  ali model 3D-neighbors follow..  48  1.SYDQAFLEQYEKIKDPASGYFREFNVPYHSVETMIVEAPDHGHQTTSEAFSYYLWLEAYYGRVTGDWKPLHDAWESMETFIIPGTKD----QPTNSAYNPNSPATYIPEQPNADGYPSPLMNNVPVGQDPLAQELSSTYGTNEIYGMHWLLDVDNVYGFGFCGDGTDDPAYINTYQRGARESVWETIPHPSCDDFTHGGPN-GYLDLFTDDQNY-AKQWRYTNAPNADARAVQVMFWAHEWAKEQGGLMDKASKMGDYLRYAMFDKYFKKIGNCVGTSCPGGQGKDSAHYLLSWYYSWGGSLDTSSAWAWRIGSSSSHQGYQNVLAAYALSQV-PELQPDSPTGVQDWATSFDRQLEFLQWLQSAEGGIAGGATNSWKGSYDTPPTGLSQFYGMYYDWQPVWNDPPSNNWFGFQVWNMERVAQLYYVTGD---------ARAEAILDKWVPWAIQHTDVDADN----------------------------GGQNFQVPSDLEWSGQPDTWTGTYT--GNPNLHVQVVSYSQDVGVTAALAKTLMYYAKRSG---------DTTALATAEGLLDALLAHRDSIGIATPEQRLDDPWDGSEGLYVPPGWSGTMPNGDRIEPGAT---------------FLSIRSFYKNDPLWPQVEAHLNDPQN-------VPAPIVERHRFWAQVEIATAFAAHDELFG.. 638
2 -5.590d3hlxa1 a.132.1.4 (A:2-251) Coenzyme PQQ synthesis protein C, PqqC {Klebsiella pneumoniae [TaxId: 272620]}  ali model 3D-neighbors follow..  10  4....................................................................................................................................................................DTLSPQAFEEALRAKGDFYH---IHHPYHIAMHNGNATREQIQGWVANRFYYQTTIPMANCPDAQTRRKWV-----------QRILDHDGSHGEDGGIEAWLRLGEAVGLSRDDLLSERHVLPGVRFAVDAYLNFARRACWQEAACSSLTELFAPQIHQSRLDSWPIKEEGYFFFRSRLSQANRDVEHGLALAKAYCDSAEKQNRMLEILQFKLDILWS--------MLDAMTMAY-ALQRPPYHTVTDKAAWHTTRLV........................................................................................................................................................................................................................................................................................ 250
3 -5.500d3jtga_ a.4.5.21 (A:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  10  7............................................................................................................................................................................................................FIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERV............................................................................................................................................................................................................................................................................................................................................................................................................................................... 74
4 -5.370d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  17  1................................................................................................................................................................................................................................................................................................................................GDTGPYVQYAHARAHSILRKAGEWGAPDLSQATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNAREN............................................................................................................................................................................................................................................................................................................. 82
5 -5.350d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]}  ali model 3D-neighbors follow..  12  3................................HVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFES-------PDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTN--CMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVDWIFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWYVNFGSTTVMTPEQLLEFA-----WGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQNHPSIGGFLTHGWNSTTESICAGVPML--------PFFADQPTDCRFICNEWEIEELAKLIVIAGDKGKKMKQKAMELKKKAEENTR........................................................................................................................................................................................................................................................... 454
6 -5.330d1iioa1 a.39.4.1 (A:1-81) Hypothetical protein MTH865 {Methanobacterium thermoautotrophicum [TaxId: 145262]}  ali model 3D-neighbors follow..  18  3.......MGVKEDIRGQIIGALAGADFPINSPEELMAALPN-GPDTTCKSGDVELKASDAGQVLTADDFPFKSAEEVADTIV............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 76
7 -5.290d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  1.............................RSAHLRVRQLPHAPEHPVATL------STVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERV.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 104
8 -5.190d6bk0a_ c.87.1.0 (A:) automated matches {Oryza sativa [TaxId: 39947]}  ali model 3D-neighbors follow..  12  1................................QVLLLPFP-QGHTNPMLQFGRRLAYHGLRPTLVTTRYVLSTTPPPGDPFRVAAISDGFDDASGMAALPDPGEYLRTLEAHGARTL-AELLLSEARAGRPARVLVYDPH-------LPWARRVARAAGVATAAFLSQPCAVDLIYGETPTDARGLYARGVLGVELGPDDVPPFVAAPELTPAFCEASIEQFAGLEDDDDVLVNSFSDLEPKEAAYMESTWRAKTIGPSLPSFYLDD-----GRLRSNTAYGFNLFRSTVPCMEWLVSYGTVSTFDVAKLEELGNGLCNSGKP----LWVVRSNEEHKLS------VQLRKKCEKRGLIVPFCPQAHKATGCFLSHGWNSTLEAIVNGVPLV--------PHWADQPTISKYVESLWGMEEVERCIVMDGDRKEDYRRNATRLMKKAKESMQ........................................................................................................................................................................................................................................................... 434
9 -5.180d1ka8a_ a.4.5.20 (A:) P4 origin-binding domain {Bacteriophage P4 [TaxId: 10680]}  ali model 3D-neighbors follow..  19  2.............................................................................................................................................................................................................................................................................................................................................................ADPTFDFIGYLETLPQTSGMYMGNASIIPRNYYHAY---------LAYMEANGYRNVLSLKMFGLGLPVMLKEYGLNYEKRHTKQGIQTNLTLKEESYGDWLP........................................................................................................................................................................................................................................................... 99
10 -4.860d1qvia2 c.37.1.9 (A:6-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}  ali model 3D-neighbors follow..  12  42..............................................................................................................................LNEASVLYNLRSRYTSGLIYTYSGLFSVIAKYRGKRKTESVADNAYQNMVTDRENQSCLIT-----------GESGAGYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRI-----HFGPTGK---------AGADIETYLL----------EKSRVTYQQSAERNYHIFYQ--ICSNAIPELNDVM-------------LVTPDSGLYSFINQGCLTVDN-------DDVEEFKLCDEAFDILGFTKE--------------EKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKA---KVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKAKRNYYIGVLDAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIA--WEFID---IDLIEKPMGILSILEEECMFPKADDKSFQD........................................................................................ 497

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 7 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Topczewski J, Godzik A., Paszewski A. The Aspergillus nidulans cysA gene encodes a novel type of serine O-acetyltransferase which is homologous to homoserine O-acetyltransferases. Microbiology. 2000 Oct;146 ( Pt 10):2695-703.