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Query: 5Y8X Entity 1(prereleased), from PDB1018

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRRLAFLVVAFCLAVGCFFSPVSKAEGVMSGGDGDKVAVGKDGMVATAHPLASKIGAEVLKKGGNAIDAAIAIQYALNVTEPMMSGIGGGGFMMVYDGETRETSIINSRERAPEGAKPDMFLDEDGKVIPFSERSRHGNAVGVPGTLKGLEAAHKKWGTKKMEDLISPSIKLTEEGFPIDSVLADAIKDHQDKLSKTAAKDIFLPDGEPLKEGDILVQKDLAKTFKLIRKEGSKAFYDGEIGRAIADVVQDFGGSMTPDDLSRYEVTTDKPIWGEYHGYDIASMPPPSSGGVFMLQVLKLIDDFHLSQYDPKSFEKYHLLAETMHLSYADRAAYAGDPEFVDVPLRGLLDPDYIKERQKLISLDSMNRDVKEGDPWKYEEGEPNYEIVPQPEDKTIGELast
1 -97.100g2dg5.1 d.153.1.6 (A:37-387,B:391-580) Gamma-glutamyltranspeptidase, GGT {Escherichia coli [TaxId: 562]}  ali 3D-neighbors follow..  36  3................................DVFHPVRAKQGMVASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRSK-NGNTTAIDFREMAPAKATRDMFLDDQGNPDS-KKSLTSHLASGTPGTVAGFSLALDKYGTMPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVNHENSKAIFWKEGEPLKKGDTLVQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLITKEDLAAYKAVERTPISGDYRGYQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADAMQIMAEAEKYAYADRSEYLGDPDFVKVPWQALTNKAYAKSIADQIDINKAKPSSEIRPGKLAPYEXTTHYSVVDKDGNAVA. 367
2 -91.400d2nlza1 d.153.1.6 (A:3-539) Cephalosporin acylase {Bacillus halodurans [TaxId: 86665]}  ali model 3D-neighbors follow..  27  3.......................FDPQSYPYPSRRNVVYAKNGMVATSQPLAAQAGLDILKAGGNAIDAAIATATALTVLEPTSNGIGSDAFALVWTK--GKLHGLNGSGRAPMSLTMEAVKAKGYEQ---ELPPYGVIPVTVPGAPGAWAELAKMYGNLPLAASLAPAIRYAEEGYPVTPTLAKYWKAAYDRVKTQPWFDTFAPKGRAPRVGEVWRSQGHADTLRSIAESNGESFYRGELADQIHAFFDKHGGYLTKEDLACYRPEWVEPISIDYRGYRVWEI-PPNGQGLVALEALNIVKGFEFY--HKDTVDTYHKQIEAMKLAFVDGMKYVTEPSDMSVSVEQLLSDEYATERRKEIGEQALTPE-----PGTPPRGGTVYLATADGDGNMVS. 370
3 -84.400d2i3oa1 d.153.1.6 (A:1-516) Hypothetical protein Ta0994 {Thermoplasma acidophilum [TaxId: 2303]}  ali model 3D-neighbors follow..  24  3................................RSRPNALSQRSVIASSSELASLAGRDILKRGGNIFDAALAVSAMLCVTQNNLCGLGGDLFALIRDE-NGQIMDLNGSGQASRAVSIDYYESMGLTKIP---ERGPYAAITVPGIAGSWDEIFRKFATMDIADILEPAIRTASAGFPITQNYSDSIARSAPVIQYRGWSSIFMPNGSVPVAGEILKQPDLAESFRLMSEEGFRSFYDGSLADIIIAGLEGTGSPLSDRDLRVYRPLIGKPVFTDLDEFRIYETSPNSQ-GITVIEWIRGMESHGYDSRTMWEAK-IEDIFETMEEAYDKR-RKITDPSYMNIAQHDSANGKKDGLPKRDHN----------------DIGDTTYFSISDSEGRSVS. 345
4 -5.640d3ljqa_ d.153.1.5 (A:) automated matches {Flavobacterium meningosepticum [TaxId: 238]}  ali model 3D-neighbors follow..  13  16...................................................ANVEAWKVLSKGGKALDAVEKGVRLVE--DPTERSVGYGGRPDRDGRVTLDACIMDENYNIGSVACMEHIKN--------------------PISVARAVMEKTPHVMLV-----DGALEFALSGFKKENLLTAESEKEWKEWLKTSQYKPIVNIENHDCIGMIALDAQ-GNLSGACTTSGMAYKMHGRVGDSPI-----GAGLFVDNEIGAATA---------------------TGHGEEVIRTVGTHLVVELMNQGRTPQQACKEAVERI.......................................................................... 238
5 -5.620d3fcda1 d.32.1.0 (A:4-124) automated matches {Uncultured bacterium [TaxId: 77133]}  ali model 3D-neighbors follow..  10  3...........................................................................................................................................................................................................................QITPFLHIPDMQEALTLFCDTL------------GFELKYRHSNYAYLELSGCGLRLLEEPARKIIPDGIARVAICIDVSDIDSLHTKLSPALENLPADQVEPLKNMPYGQREFQVRMPDGDWLNFTAPLA................................................ 121
6 -5.610d5icea1 a.4.5.0 (A:3-104) automated matches {Thalictrum flavum [TaxId: 150095]}  ali model 3D-neighbors follow..  16  8..........................................................................................................................................................................................................................SSQAKLWNFIYGFADSLVLKSAVQLDLANIIHNHGSPMTLSELSL-------------------HLPSQPVNQDALYRVLRYLVHMKLFTKSSIDGELRYGLAPPAKFLVKGWD.................................................................. 102
7 -4.900d4af1a1 d.91.1.0 (A:7-144) automated matches {Halobacterium salinarum [TaxId: 478009]}  ali model 3D-neighbors follow..  10  7.....................................................................................................................................................................................................................RKYEFRKVIEELKDYEGSGTQLV-PDKQISDVVAHVTQEHSEASNIKSKQTRTNVQDALTSIKDRLRYYDTFPPDNG-------MVVFSGAVDSGGGRTDMVTEVLESPPQPI---ESFRYHCDSAFLTEPLAEMLGD............................................... 138
8 -4.890d1ayea2 d.58.3.1 (A:4A-99A) Procarboxypeptidase A {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  3..................................................................................................................................................................................................................................................................................TFVGDQVLEIVPSNEEQIKNLLQLEAQEHLQLD--------------------------FWKSPTTPGETAHVRVPFVNVQAVKVFL-----------------ESQGIAYSIMIEDVQVLLDK 83
9 -4.770g1k2x.1 d.153.1.5 (A:,B:) Glycosylasparaginase (aspartylglucosaminidase, AGA) {Escherichia coli [TaxId: 562]}  ali 3D-neighbors follow..  11  34...................................................IVETGQKMLEAGESALDVVTEAVRLLEECPLFNAGIGAACVMDGNTLKAGAVAGVSH--RNPVLAARLVMEQSPHVMMIGEGAENFAFARGMERVSPEIFSTSLRYEQLLAARXTVGAVALDLDGLAAATSTGGMTNKLPGRVGDSPLAGCYANNASCTGTGEVFIRALAAYDIAALMDYGGLSLAEARVVMEKLPALGGSGGLIAID........................................................................................................................................... 260
10 -4.660g1apy.1 d.153.1.5 (A:,B:) Glycosylasparaginase (aspartylglucosaminidase, AGA) {Human (Homo sapiens) [TaxId: 9606]}  ali 3D-neighbors follow..  10  15...................................................ATEAAWRALASGGSALDAVESGCAMCE--EQCDGSVGFGGSPDELGETTLDAMIMDGTTMDVGAVG-------------------DLRRIKNAIGVARKVLEHTTHTLLV-----ESATTFAQSGFINEDLSTSASQALHSDWLARNCQPNYWRNVIP-DPSKYCGPYKPPXTIGMVVIHK-----TGHIAAGTSTNKFKIHGRVGDSPIPG---------AGAYADDTAGAAAA-TGNGDILMRFLPSYQAVEYMRRGEDPTIACQKVISRIQKHFPE.................................................................... 256

FFAS is supported by the NIH grant R01-GM087218-01
1 2 7 7 1 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24