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Query: 1z7m_A mol:protein length:344 ATP phosphoribosyltransferase regulatory subunit, from PDB1018

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRGSGSIEGRMEKINYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFTLPLVRLYSQIKDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQLGLNKTVFEIGSAKFFQRLCQLADGSTELLTELLLKKDLSGLNAFIEKNNFSKELRGLLKEIFITNELSRLENLVTNTKDDVLISSFDQLKEFSEKLSMIKPIIIDLGMVPKMDYYTDLMFKAYSSAANQPILSGGRYDQLLSNFQEEAFAIGFCCHMDTILKALERQELEEDNDLast
1 -80.600[E] COG3705 ATP phosphoribosyltransferase involved in histidine biosynthesis  ali follow..  20  3..............TWQLPEHIADVLPTNARQLESAREQLLALFRVHGYELVQPPLMEYAHSLLTHIDA--GLSLKTILVTDRLSGRQLGIRADITPQVARIDAHLANQGINRLCYAGPVLHAQSDGLLNMREPLQAGAEMYGFADIRGDIELIDLMLKSMKIADMGKVLLSLGHIGIFRALSDAAHLDAGQLLALMQDKDTETVEAQVKAWKLDKAFSLLPRLYGGREVLSDARGRLPD--LSAVGGALGELQAVCDAFP-DCEIHIDLSELRVDNYHTGLLYAAYAADFHDAVARGGRYDGLGGYFGRARPATGFSFDLRSFIGRLPAIERQPA.. 328
2 -79.100[J] COG0124 Histidyl-tRNA synthetase  ali follow..  22  1.............MAIQIPRGTQDILPGDVETWQWIEQKAYDLCRRYNYQEIRVPMFEHTELFLRGVGDTTDIVQKEMYTFEDRGGRSLTLRPEGTASVTRAYVSNKLNQPTKLFYIGPMFRYERPQSGRMRQFVQFGVEALGSADPAIDAEVLALVMRFYEELGLKNLKLVINSLGDTDSRLAHREALVNHFKPRIHE-----FCNDCQDRLEKNPLRILDCKKDRDHELMGTAPSIHDYLSTESKAYFEKVQSYLTALNI--PFVVDATLVRGLDYYNHTAFEVMVDGAITTLCGGGRYNGLVEEIGGETPGIGFALSIERAIMALEAQQAKPAHN 327
3 -73.500[J] KOG1936 Histidyl-tRNA synthetase  ali follow..  15  42LTSQLKAHQEKPNFIIKTPKGTRDLSPQHMVVREKILDLVISCFKRHGAKGMDTPAFELKETLTEKYGEDS----GLMYDLKDQGGELLSLRYDLTVPFARYLAMNK-VKKMKRYHVGKVWRRESPTQGRYREFCQCDFDIAGQFDPMPDAECLKIMCEILSGLQLGDFLIKVNDRRIVDGMFAVCGVPESKFRAIIDKLDKMAWKDVRHEMVVKGDYVQCHGGVSLVEQMFQDPRLSQNKQALEGLGDLKLLFEYLTLFGIADKISFDLSLARGLDYYTGVIYEAVLLQTPTSVAAGGRYDGLVGMFDPKVPCVGLSIGVERIFYIVEQRMKTKGEK 404
4 -14.300[J] KOG2324 Prolyl-tRNA synthetase  ali follow..  42...................PGIFQYLPLGLRVQNKICDLLHISMRSLGASAISLAHLSSKEIWEK--SGRWQKTGSELFRLHDRNDREMCLAPEDVTRTMATIIDSQKQLPIRVYQIGRKFRDELRPRGRGREFMMKDLYTFDIDKASAMKTVLQAYHTFFKEVGLPFVMVKAATGNIGGNLSHEFHYRHPVGEDVIYTCPSCHY------------------------------STNSEMLDLSKTSSDISCPNCNDQLTSTTAIEVGHAFYLGKIYSSKFNATVEVKNKQEVLHMG------------------YGIGVSRLIAAVAHV....... 313
5 -13.100[J] COG0442 Prolyl-tRNA synthetase  ali follow..  14  34................KLASGLYTWLPTGVRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQE--SGRWEQYGPELLRFVDRGERPFVLGPEVITDLIRGEINSYKQLPLNFFQIQTKFRDERPRFGRAREFLMKDAYSFHTTQESLQEAMYTAYSKIFSRMDLNFRAVLADT................................................................................................................................................................... 199
6 -11.700[J] KOG0556 Aspartyl-tRNA synthetase  ali follow..  10  254.............................FDIQAGICQAFREFLLSNSFNEIHTPKMSGASSEGGSNVFKIQYFKTDGF---------LSQSPQLYKQMLIAAD--------RVFEIGPVFRAEDSNTYRHTEFTGLDLEMAFNEHYH---EVMEFIEKLFLYI--------------FKTIREKYAKQVAVVRQQYPSEDFILPDADRIRFHFKDAVKLLKEAGYRKQLVPGQKVPEDEEFDDFSTPEERALGQIVREKYHTDFYVIDKYPSSVRPFYT---YDFFMKG--QEIMSGAQPELLVERM-GCPPHAGGGIGLERVVMFYLNLPNIRL.. 567
7 -11.300[J] KOG4163 Prolyl-tRNA synthetase  ali follow..  11  205.........KGEMLDYYDVSGCYILRPPSYAIWENIQKWFDDKIKAIGVQNAYFPMFVSSRVLEKEKDHVEGF-APEVAWVTRAGEEPIAIRPTVMYPYYAKWVQSYRDLPLKLNQWNSVVRWEFKHPQRTREFLWQEGHTAHLTAKDAELQILDFYAGVYEELLAVPVVKGIQGATSHHLGQNFSKMFNLSVENPLGSDHPKIFAYQNSWGLSTRVIGVMVMIHSDNKGLVGITKKTSEEQRKHIHETARSVESRLKKVGIRAFGDYNDNYTPGWKFS-----QYELKGIPIRIELGPK--VVVRRNDSKKYVVSFDELEARIPEILEEMQGDLFKK 587
8 -11.100[J] KOG0554 Asparaginyl-tRNA synthetase (mitochondrial)  ali follow..  12  228.............................ARVRNTLAYATHKFFQESGFVWVASPIIEQFCVTTLIPSSHENTDTSIDAIPKTKGGLILTVSGQLNGETYATALS-------DVYTFGPTFRAENSNTSRHAEFWMIEPEL-----AFADLDDMACATAYLQYV--------------VKYVLDNCKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEILLKANKKFDFPVKWGLDLQSEHERYI------TEEAFGGRPVIIRDYPKEIKAFYM---MDMLVPRIGELIGGSQREERLLRRYGSV-PHAGFGLGFERLVQFVTGIDNIRD.. 554
9 -10.800[J] COG0441 Threonyl-tRNA synthetase  ali follow..  13  262....................GMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWE--KTGHWDNYKDAMFTT-SSENREYCIKPMNCPGIFNQGLKSYRDLPLRMAEFGSCHRNEPSGS-RVRGFTQDDAHIFCTEEQIRDNGCIRLVYDMYSTFGFEKIVVKLST---RIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKI-----EFTLYDCLDRAWQCGTVQLDFSLPSRLS-ASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLA-TDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFK....... 581
10 -10.700[J] COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II)  ali follow..  13  38...........................SQLKQRATLLRQIREFFAERNVLEVETPAMSHA----TVTDIHLHTFKTEFVGPGYAKGSALHLMTSPEFHMKRLLAAGSG----CIYQLGKAFRNEENGRYHNPEFTM--LEWYRIGFDHHA--LMDEMDALLQLVLRCGSAERMTYQEAFLNVLGV-CPLEEEMRELKQVAATLGLSDIAEPEEDRDTLLQLLFSIGIEPKIGQITPAFVYDFPASQAA-------------LAKINPADPRVADRFEYFKGIELANGFHELDNPAEQLARFYHLIAALEAGLPCAGVALGIDRLIMLALGEDHIDK.. 340
11 -10.200[J] KOG0555 Asparaginyl-tRNA synthetase  ali follow..  10  242.............................LRIRAAATRAMRDHFFAAGYTEVAPPTLVQTQVEGGSTLFGLDYYGEPAY---------LTQSSQLYLETCNAALG-------DVYCISQSYRAEKSRTRRHSEYQHVEAEC----AFITFDQLMDRIEALVCDT-----------------VDRLLADPVTKSLIEFVNPGYKAPARPFKRMPYKEAI----------EWLQKNDVRNEMGEKFVYGEDIAEAAERRMTDTIGVPILLNRFPHGIKAFYM---VDLLMPGVGEIVGGSMRIWKEQRKYGSV-PHGGYGLGLERFICWLTDTNHIRD.. 532
12 -9.840[J] COG0017 Aspartyl/asparaginyl-tRNA synthetases  ali follow..  11  130.............................MKIRNEVIRATYEFFNKDGFTKVDPPILTASAPEGTSELFHTKYFDQDAF---------LSQSGQLYLEAAAMAHG-------KVFSFGPTFRAEKSKTRRHIEFWMIEGEMAFTN---------------------------------HAESLEIQEQYVTHVVKSVLENCKLELKILERDTSKLEKVATPFPRISYDDAIEFLKAEGFDDIEWG--EDFGAPHETAIANHYDLPVFITNYPTKIKPFYM---ADLIAPEGYGEIIGGSDLELLEQRV-GSVPHCGFGLGLERTVAWISGVEHVRE.. 417
13 -9.780[J] KOG1637 Threonyl-tRNA synthetase  ali follow..  15  309...................PGSCFFQPRGAHIYNTLMGFIKAEYRKRGFQEVISPNIYNAKLWM--TSGHWQHYAENMFSF-EAEKEKFALKPMNCPGIFDNRNRSWRELPLRMADFGVLHRNELSGA-RVRRFQQDDAHIFCAPEQIKSKGCLEFLKYVYTIFGFSFQLVLSTRPDNYLGELEQWNDAEKALAESLNEFGMPWKENPGDGAFYGPKI-----DITIMDALKRAHQCATIQLDFQLPIRFN-LSYIADDGEKKRPVIIHRAILGSVERMIAILTENFSPRQVMVVPVGPAYDQYAQSVRDQLHDAGFMSEAD................ 619
14 -9.540[J] KOG2411 Aspartyl-tRNA synthetase, mitochondrial  ali follow..  12  1.........................MQYNLRLRSQMVMKMREYLNLHGFVDIETPTL----------FKRTPGGAKEFLVPSREPGKFCSLPPQQFKQLLMVGG--------RYFQVARCYRDEGSRPDRQPEFTQIDIEM----SFVDQTGIQSLIEGLLQYS--DPVVVPFPTMTFAEVLATYGTDKPDTISDVFRNTEIGFLQDALSKPHGNRNWNSPVANFIMESQRLELIRLMETQEEDVVLLTAGEHNKACSLLGKLRLECADLLETRGVVLRDSQHYDLVLNGNE---IGGGMLSHLLQALDYGAPP-GIALGLDRLICLVTGSPSIRD.. 418
15 -9.520[J] COG0173 Aspartyl-tRNA synthetase  ali follow..  13  110FQIDDENISENVRLTNRVIDLRRPVMQRNLRLRYQVAMGVRRYLDAQGFIDIETPML---------TRSTPEGARDYLVPSRVHPGEFFALPPQLFKQLLMVAG--------RYYQITKCFRDEDLRADRQPEFTQIDLET----SFLNEDEIMDITEGMAKQV-LNVDLGDFPRMPYSEAMFYYGSDKPDMLTDLMKTEEFKVFRGAADMKGEDSGLQSPIVKYLSENALKEIIARTGAQNGDIIFFGADKAKVVNEAIGALRIKVGLEHGKDNG---LARAYDMVLNGWE---IGGGKFGFLLDNLKFGAPP-GLAFGLDRLVTLMTGAESIRD.. 559
16 -9.370[E] COG2502 Asparagine synthetase A  ali follow..  1.....................MKKTFILQQQEISFVKNTFTQNLIEQGIIEVQGPIL--SQVGNGMQDNLSGIEKAVQVNVKCIPNAVFEVVHSLAKWKRHTLARFNFKEDEGLFVHMKALRPDEDSLDPTHYVDQWDWEK----VIPEGRRNFAYLKETVNSI-----------------YRAIRLTELAVEARFDIPSILPKQITFVHSEDLVKRYPDLSSKERENAICKEYGAVFLIGIGGKLSDGKPHDGRAPDYDDWTTESENGYKGLNG-----DILVWNDQLGKAFELSSMGDESALRLQVGKLPLTIGGGIGQSRLAMLLLRKKHIGE.. 312

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 8 4 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;