current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: 3kf8_A mol:protein length:220 Protein stn1, from PDB1018

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220
# Score Template Links and tools%idFirst PLGSKDNRLLYPKTKIDWGPGENHICLKTPFKNFYVIELFHQAPTFDKTIPLFISDINNSPNLYGIYNYIADHLRHVVLVNNYPVNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGEIYNWYDSINVSKKPDRELKVSKITVLSHRPDGLHFEFEQWKKRMEFRKNNLVEPWVFIPTPQRELast
1 -39.100[L] COG5235 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit  ali follow..  31........................................ETNTRVNTLTPVTIKQILESKQ---------DIQDGPFVSHNQELHHVCFVGVVRNIT--------DHTANIFLTIEDGTGQIEVRKWSEDANDLAAGNDDAQQFEIGGYVKVFGALKEFGGKKNIQYAVIKPI------------DSFNEVLTHHLEVIKCHSIASGMMKQPLESASNN 191
2 -32.100[L] KOG3108 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit  ali follow..  10  33..............................................KLPLPVTLASLSTKLE---------DTDDDSYQIGEYSFRTIHTVGVILEKS--------YEDGKTTYTLHDPEDTAKIFHAQFGNYNDGGSKFVSPGLEEDTRVRLMGKLKNVAGNKMILIYYLQKLA------------DNKEYEIFKLETQASY................. 161
3 -25.200[S] COG3390 Uncharacterized protein conserved in archaea  ali follow..  13  7..............................................EVSRRVFAQELKDSNLTFR-DETDQYAPQYLLTPTGAKVNRIFIVGTLIEKED-----IGTDSEYWRGRVSDPTGSFLVYAGQYQPEAAQF----LEECELPAFVAVIGKTSTYTTDDGNVLTSIRPESIQQVD........................................ 130
4 -15.000[S] COG3111 Uncharacterized conserved protein  ali follow..  18  59.....................................................................................TWVTLRGNIVERISDDL-----------YVFKDASGTINV--------DIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKVN............................................. 129
5 -10.700[J] KOG0556 Aspartyl-tRNA synthetase  ali follow..  11  105.....................................................................................QTVLLRARVYTSRLQ-------GNKMCFFSLRQKYDTIQALAVVNKDTISKQMVKWCGSISLESIVLVEGIVKKSPEIIKSATVQDAEIHISSIYVISPIKKNLNLDTRLDNRVLDLRTPTNQAIFDIQAGICQ. 262
6 -10.300[R] COG4085 Predicted RNA-binding protein, contains TRAM domain  ali follow..  11  184.....................................................................................EEVTIKGIITA------DQNAIGGGKLSTFLQDETGGI---------NIYSPSPEQFPELKEGMDVTVTGKITSYQGLKEIVPNSSGIKINQSLTINELINGSLGDQYE---RLVKLTAFVSSIP.......... 300
7 -10.200[R] COG3481 Predicted HD-superfamily hydrolase  ali follow..  7...................................................................................LHEVGEQVDQYLLIKSSTKGIASNGKPFLTLMLQDQSGDIEAKLWDAKQSDEVT-------YAPQTIVKVVGDVHHYRGRTQLKLRNIRPVSEQENVNIDDFLETAPIPKNEMMDTITQYIFEMKNP.......... 126
8 -9.350[L] COG0629 Single-stranded DNA-binding protein  ali follow..  12  4....................................................................................INKVMLVGRCG--QEPDLKFFESGAVKASISISEQALWFDLVAWGNQAEVIGN-------VRKGTQIAITGEFGRWADKNSGTMRQKPVITINTIELLGSPRKEESTS............................ 112
9 -9.130[S] COG5135 Uncharacterized conserved protein  ali follow..  4...............................................AWKNELLKLLKENVDSSGVIHPEYFQLATL---EIYPNRTVAIRGFVGTGWHKPRPDDVLATDLLVFSTDIASHKAAEIAEQQKNTFPSGPIPNAFEMKTMQQIRISGQIWLYTPELADRNEFPADKLIQDHLINSNGRIPEEWSRRIWELHSPELRASFSTP.......... 178
10 -9.130[S] KOG4558 Uncharacterized conserved protein  ali follow..  4...............................................AWKNELLKLLKENVDSSGVIHPEYFQLATL---EIYPNRTVAIRGFVGTGWHKPRPDDVLATDLLVFSTDIASHKAAEIAEQQKNTFPSGPIPNAFEMKTMQQIRISGQIWLYTPELADRNEFPADKLIQDHLINSNGRIPEEWSRRIWELHSPELRASFSTP.......... 178
11 -9.100[J] COG0173 Aspartyl-tRNA synthetase  ali follow..  16.....................................................................................QTVTVKGWVHRRR--------DHGGVIFIDLRDREGIVQVVI----DPDTPEAFAAADSSRNEYVLSITGRVRN-SGKIEILAKEIEVLNAAATPPFQIDDENISENVRLTNRVIDLRRPVMQRNLRLRYQVAMG 148
12 -9.100[J] KOG0555 Asparaginyl-tRNA synthetase  ali follow..  12  63...VKKYEAEVKKLEKAGCREKEAEEAQHAALEEAKKITFSLDKSLPEAKVIKIGESVQHRD-----------------------QRVSIKAWVHRLR-------RQGKSLMFLVLRDGYGFLQCVL-----NDKLCQSYDAVTLSTETSVQVYGIIKALPDGKS--APDGHELTVDYWEVIGKAPAGGGVDVMLDNRHLVIRGENASRILRIRAAATR. 250

FFAS is supported by the NIH grant R01-GM087218-01
1 2 9 7 3 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.