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Query: PF03838.12; G8PDE9_PEDCP/29-194; Recombination protein U, from PfamA30U

Results of FFAS03 search in PfamA30U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst RGMSLEEELNSSNQYYLSRGLGVIHKKPTPIQIVKVEYPKRSAARITEAYFRQASTTDYNGVYKGHYLDFDAKETTNLTSFPLKNFHTHQITHMKQCIDAGGICFTIIKFVKLDRIFLLQAINLFDYWDKKDNGGRQSIPLSYFEEQGIEIKYKLAPLIPYLSAVDLast
1 -111.000PF03838.12; G8PDE9_PEDCP/29-194; Recombination protein U  ali  100  1RGMSLEEELNSSNQYYLSRGLGVIHKKPTPIQIVKVEYPKRSAARITEAYFRQASTTDYNGVYKGHYLDFDAKETTNLTSFPLKNFHTHQITHMKQCIDAGGICFTIIKFVKLDRIFLLQAINLFDYWDKKDNGGRQSIPLSYFEEQGIEIKYKLAPLIPYLSAVD 166
2 -8.610PF01870.16; HJC_ARCFU/7-99; Archaeal holliday junction resolvase (hjc)  ali follow..  19............................................RVAGSGVSPFPCPDIVAGNGRTYLAIEVKMRKELPL----YLSADEVEQLVTFARGFGAEAYVALKLPRKKWRFFPVQ............................................ 92
3 -8.520PF09225.8; K9XGE0_9CHRO/113-266; Restriction endonuclease PvuII  ali follow..  13  25..............................INDVFQDNGGKVLQVLILLGLRISPGCEGNDAIDAEGHKYELKTINKLLSRSVTTHHHLNLDILAKYRAVKAWYIAVYEGIVLKAIYRVAPTSLESKFSYWESRNNPKIPLALIEKEGKLV............... 153
4 -6.970PF15849.3; CD051_MOUSE/1-174; Domain of unknown function (DUF4722 topsan)  ali follow..  22  2...........THFLYLTPEILL----PSPLTSTEFELIRRKAQQLDETRWSASSMTTYSGSYREKQLD-EATCNRLAQRVGQPQFEYKP............................................................................ 78
5 -6.810PF15124.4; G3I9Z4_CRIGR/5-180; FANCD2 opposite strand protein  ali follow..  12  69......DSAGQASEPETTDKKYGLVRKPEPIRLIGVD-----------SVFGRDITVQWTGTFRVSDTSAFSKIISKEQKWP-TGLKDPQNEMTVAMCKQMLRSILLLYALYKKCTFVLQHSQ........................................... 176
6 -6.730PF01648.18; A3I0U0_9BACT/106-207; 4`-phosphopantetheinyl transferase superfamily  ali follow..  16  1.............................PV--IDMDFIREKILRIGFRFLDPSELDFLEKDPLHYTLAWSAKESIFKCQGRRGVSFRENILLEPFEPGATVIKAKIRGTEFADHYYKVQARILQDV....................................... 97
7 -6.380PF07405.9; Q9R2M2_BORBU/1-127; Protein of unknown function (DUF1506 topsan)  ali follow..  15  1........MNGVRKRLSDMSFRMINKDPQPLRFYKGTVVKLENDSSYQRVFDKNKYTEFAGVIIDI---YDSDMSDIQGYSKLYTYQDLNYELKDRISISDLIYFEIFSIDSSIGYFTLVLKEFI......................................... 124
8 -6.140PF04827.12; Q9AY56_ORYSJ/171-375; Plant transposon protein  ali follow..  11  4...................................LRRPTAEDLERLLQVGESRGFPGMLGSIDCMHWRWKNCPTAWKGQYTRGDQKYPTIILEAVASYDLHIWHAFFGIPSNNDINVLNQSPLFIEAIKGEAPQIQFIVNGTQYNTGYYLADGIYPEWAAF.... 131
9 -6.140PF00153.25; O80412_SOYBN/169-260; Mitochondrial carrier protein  ali follow..  15  18....................IADIALCPFEAVKVRVQTQPGFARGLSDGLPKFVRSEGTLGLYKGLVPLWGRQIPYTMMKFASFETIVELI........................................................................... 88
10 -6.090PF05652.10; U4L4Z6_PYROM/8-112; Scavenger mRNA decapping enzyme (DcpS) N-terminal  ali follow..  19  3RKFVFERLLNEDTRMKLVNILGKIDGKPAIIIAEKTAFDTSPEFLQAFAQPANLSQLS-NDIYYWYHASQTSGELPQHAEVKLTLIYPATDAHIRKYSVQ.................................................................. 105

FFAS is supported by the NIH grant R01-GM087218-01
1 2 2 3 4 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.