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Query: PF03529.11; M3ZUI9_XIPMA/174-274; Otx1 transcription factor, from PfamA30U

Results of FFAS03 search in SCOP206
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100
# Score Template Links and tools%idFirst SPAPISPAPAPANLPDPVAPTSASCMQRSATSSSNGGAASYPVSYSQTAAAYSQGYPASASGSYFSGVECGSYLAPMHSHHHPHQLSPMTGSSMTGHPHHHLast
1 -8.590d1flca1 b.19.1.3 (A:151-306) Hemagglutinin domain of haemagglutinin-esterase-fusion glycoprotein HEF1 {Influenza C virus [TaxId: 11552]}  ali model 3D-neighbors follow..  15  3............SLVNALDKTIPLQVTAGTAGNCNNSFLKNPALYTQEVKPSENKCGKENLAFFFGTYECKLHLVAS........................ 72
2 -6.690d1ksqa1 g.23.1.1 (A:3-75) Transforming growth factor-beta binding protein-1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  1...............DQPKEEKKECYYNLNDASLCDNVLAPNVTKQECCCTSGAGW----------GDNCEIFPCPVLGTAEFTEMCPKGKG......... 67
3 -6.350d1oaca3 d.17.2.1 (A:186-300) Copper amine oxidase, domains 1 and 2 {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  2..VLLDDFASVQNIINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDLEQKKIVKIEEG.... 96
4 -5.850d2p6ya1 d.290.1.0 (A:1-130) automated matches {Vibrio cholerae [TaxId: 666]}  ali model 3D-neighbors follow..  14  13..............MDLKQQIVQLVQQHRIHAGSIASCVG---CLSTLHIRLADSVSTLQVSAPFEILSLSGTLTYQHCHLH--AVADAQGRVWGGHLLE. 94
5 -5.840d1gqva1 d.5.1.1 (A:1-134) Eosinophil-derived neurotoxin (EDN) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  46........TTFANVVNVCGNPNMTCPSNKTRKNCHHSGSQVPLIHCNLTTPSPQNIS---NCRYAQ-VACDN-VVPVH....................... 129
6 -5.810d2fcoa_ c.52.1.28 (A:) automated matches {Geobacillus kaustophilus [TaxId: 235909]}  ali model 3D-neighbors follow..  18  2...........MTLEDDLNATNEYYRERGIAVIHKKPTPVQIVRVKRSAAVITEAYFRQASTTDYNGVYRGKYIDFEAKETKNKTAFPL--KNFHAHQIRH 92
7 -5.640d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}  ali model 3D-neighbors follow..  11  3.............ITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMTKREDLVVAPAGITLKEAN.... 86
8 -5.470d1gvpa_ b.40.4.7 (A:) Gene V protein {Enterobacteria phage M13, including coliphage f1 [TaxId: 10870]}  ali model 3D-neighbors follow..  17  31..........................QLCYVDLGNEYPVLVKITLDEGQPAYAPGLYTVHLSSFFGSLMIDRLLVPAK....................... 87
9 -5.280d3nceb1 b.1.2.1 (B:1-100) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  1.............MLPPGKPEIFKCRSPNKPGTDGGLPTNYSLTYHREGETLMHECPDYITGG...................................... 58
10 -5.270d2hx0a2 d.290.1.3 (A:5-141) automated matches {Salmonella enterica [TaxId: 28901]}  ali model 3D-neighbors follow..  17  18..............QEVFSQLHAFVQQNQLRAAWIAGCTG---SLTDVALRYAGQEATTSLTGTFEVISLNGTLELTGEHLH--AVSDPYGVMLGGHMMP. 99

FFAS is supported by the NIH grant R01-GM087218-01
1 2 2 3 4 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.