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Query: PF01409.20; SYFA_BACHD/92-341; tRNA synthetases class II core domain (F), from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TIDVTLPGRPVLKGGAHPLTATITEVEDLFIGLGFSVAEGPQIETDYYNFEALNLPKDHPARDMQDSFYFTDELLLRTQTSPVQARTMEKYKGKGPIKIICPGKVFRRDDDDATHSHQFMQIEGLYVDHGVRMSDLKGVLQAFAKSFFGEERSIRLRPSFFPFTEPSVEVDVSCGICHGDGCRVCKQTGWIEILGAGMVHPRVLEMSGFNPNEYSGFAFGMGVERLSMLKYGIDDIRHFYTNDRRFLAQFLast
1 -125.000PF01409.20; SYFA_BACHD/92-341; tRNA synthetases class II core domain (F)  ali  100  1TIDVTLPGRPVLKGGAHPLTATITEVEDLFIGLGFSVAEGPQIETDYYNFEALNLPKDHPARDMQDSFYFTDELLLRTQTSPVQARTMEKYKGKGPIKIICPGKVFRRDDDDATHSHQFMQIEGLYVDHGVRMSDLKGVLQAFAKSFFGEERSIRLRPSFFPFTEPSVEVDVSCGICHGDGCRVCKQTGWIEILGAGMVHPRVLEMSGFNPNEYSGFAFGMGVERLSMLKYGIDDIRHFYTNDRRFLAQF 250
2 -13.300PF17759.1; A0A0C5VP95_9GAMM/474-682; Phenylalanyl tRNA synthetase beta chain CLM domain  ali follow..  13  1.IPVTYPVSGLEMPALKEADISHRVIKNSLVSLGMQEIVTYSFLDSLFESELEPVALANPISEDLAVMRTS------LIPNLVKTLSYNINRQQERIRLFETGLSFINTNDGLLQNQKLAGLKNWLATEEVDFYDLKSIVETVLALAPGKQ--CVFEPGQIEFLHPGQTAFIRC--------------DDQIIGYLGLVHPSIRKTLGLKKGVF.................................... 202
3 -10.200PF00152.20; SYDND_NEIMB/118-567; tRNA synthetases class II (D, K and N)  ali follow..  14  26...................YQVAMGVRRYLDAQGFIDIETPMLTRSTPEGARDYL----PSRVHPGEFFA----------PQSPQLFKQLLMVAGFDRYYQITKCFRDEDLRADRQPEFTQID--LETSFLNEDEIMDITEGMAKQVFKDRMPYSEAMFYYGSDKPDMRINLK............................................................................. 175
4 -9.100PF13393.6; G2IXI8_PSEUL/10-315; Histidyl-tRNA synthetase  ali follow..  12  2........ADILPATARQVESAKAAMLELFRTAGYELVLPPLIEYADALVSEGDSALDIKTFKLDDHL--GRQLGLRADITPQVARIHLLSNRTGVTRLCYAGSVVHARPSGLMSSREPLQAELYGYAGIEADLEIIELMLATLRQVGVDKLR-------------------------------------LDVGHIAIFR-GLAAAAGLAAEDTRELFGALQSKDIATVRELVAEVAEPYKSAFLALPEL 208
5 -8.140PF02091.15; SYGA_PELCD/3-280; Glycyl-tRNA synthetase alpha subunit  ali follow..  13  1..................FQELILALQNYWAKQGCIIQQPYDMEKGAGTFN----------------------------------ATFLRVLGPEPWNVAYVEPSRRPT--DGRYGENPNRLQHYYQFQVVMKPSPTNIQELYLDSLKSSRHDIRFVEDDWESPTLGWEVWL----------------DGMEITQFTYFQQVGGIDL-----KPVSAEITYGCERIAMYLQGVDNV.............. 172
6 -6.190PF03006.20; ADRL_CAEEL/195-416; Haemolysin-III related  ali follow..  16  61................HTLSCHSVNVVKIFCKLDYMLIIGSFIPWIYYGF---------YCRREPKITYIAMVSVLGIGAIVVSLWDKFSESRFRPIRAAVFVGMGCSGVIPTIHYIITDGVHSLFADNSFHWLLLMAFLYLLGAGLYATRTPERFFPGKCDIWFQSHQL................................................................................ 209
7 -6.060PF03689.15; POL2_CNSV/688-778; Nepovirus coat protein, N-terminal domain  ali follow..  38............................................................................................................................................................................................RWLQ---KGYIDTNLKLICHLPRAPFAGMSFFVLIDGTGYLAKDAPT-----SLNEEEILSY 91
8 -6.010PF04558.15; J7RST8_KAZNA/5-163; Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1  ali follow..  1.......................DELTEQFAAVGFDEPKVKEIVKN----KKVAASLSQLLLEASADTEWDKSNRALLHNLATLIKGSDLPHHEWIVEGIVSGDLKTNLQIDSATKESLKSESGVGVT--VTEDQVRNSVAVYLQDNKDTIMTERYK-PELKWAEP.................................................................................... 159
9 -5.970PF15357.6; PS1C1_HUMAN/4-152; Psoriasis susceptibility 1 candidate 1  ali follow..  11  14......................................QTPALQGPQLLNTDPSSEETRPPHVNPDRLCHMEPANHFWHAGDLQAMISKEFHLAATQDDCRKGRTQEDILVPSSHPELFASVLPMAPEEAARLQQ--SGIHLSASRTLAPTLLYSSPPSHSPFGLSSL.................................................................................. 148
10 -5.890PF04788.12; F6H9T4_VITVI/136-378; Protein of unknown function (DUF620 topsan)  ali follow..  10  144..................................................................YGYFSQKSGLLIYLEDSHLTRVQAPGNDTVYWETTIGTSLWD----------YRDVDGVMIAHEGRTIATVFRFGEVSMQHSRTRMEELWVIDDVVFNVPGLSFD............................................................................... 238

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.