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Query: PF09177.11; C3ZG74_BRAFL/5-104; Syntaxin 6, N-terminal, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100
# Score Template Links and tools%idFirst DPFFVVKDEVQKAVQNATGLYQRWCELLEDPVSVSKEEYDWTSNELRNSLRSIEWDLEDLDETINILCRSNPRKFKIDQQELADRRAFISRTRQSVKEMKLast
1 -52.300PF09177.11; C3ZG74_BRAFL/5-104; Syntaxin 6, N-terminal  ali  100  1DPFFVVKDEVQKAVQNATGLYQRWCELLEDPVSVSKEEYDWTSNELRNSLRSIEWDLEDLDETINILCRSNPRKFKIDQQELADRRAFISRTRQSVKEMK 100
2 -7.910PF10293.9; J3K2H8_COCIM/900-1058; Domain of unknown function (DUF2405 topsan)  ali follow..  13  64..MHRVFDNFINTTKAIQQLNHRFKTRTNEYVLEKNPEGPKHVPRISLRSRVLLFELEDFEWKLSTI-------YRLGLLEQKQRLSRDEAFMMKVRKVE 156
3 -7.430PF07889.12; B6TRT4_MAIZE/96-218; Protein of unknown function (DUF1664 topsan)  ali follow..  16  34.........................................TKRNMANAVSSMTKHLEQVQSSLAAAKRHLTQRIEKLDDKLDQQKALSGQIRDDVTDAR 92
4 -7.180PF03233.13; Q5J1S4_9VIRU/1-161; Aphid transmission protein  ali follow..  13  68..FFGLSKDPSESTSKNPSVFDNAKTIFKSGGVDNTALL----KEIKTLLESQNTRIKNLENQSKSLTDKIEPE--LTKDEVKDLKESIRFIRDKLKDI. 159
5 -7.090PF15619.6; C3YX78_BRAFL/18-210; Ciliary protein causing Leber congenital amaurosis disease  ali follow..  91.......KDLRDDLEKKEHQVSKLQKIVRDKNLAERDELNRKLMRTEQMLLDKEKKVTELNKHLELVQGSSTRQLNAERARHKETQDKLSSLQEEYERLQ 183
6 -7.070PF18645.1; A0A0G3IVS4_9MYCO/260-355; Family of unknown function (DUF5631 topsan)  ali follow..  13  2...........................................DDLGWKLVEATHWRDGLPRMVHTLAKAGAGRTGVLDAEVDVLRVHSDTARYQL.... 54
7 -6.650PF04513.12; Q287M3_NPVAS/192-327; Baculovirus polyhedron envelope protein, PEP, C terminus  ali follow..  10  51.......GDFTKLLAEIDARLAAQSSALQAALNQLAEQVRNDLSGITAILNNLTSSVTNINATLNNLLQA------VNGLNLGGIIGELQETINTILDL. 136
8 -6.490PF06009.12; LAMA_DROME/2566-2700; Laminin Domain II  ali follow..  13  8.....ALEILKNVLEILEPVSVQTPKELEKAHGINRDLTNKDVSQANKQLDDVEGSVSKLNELAEDIEEQQHRVGSQSRQEIENLKAQVEAARQLANSIK 107
9 -6.460PF01110.17; E1BFH9_BOVIN/1-193; Ciliary neurotrophic factor  ali follow..  70..........AERLQENLQAYRAFHGMLARLLEDQRAHFTPAEEDFHQAIHAVLLQVAAFAYQLEELMALLEHRVPPREAGLQELSRWTVRSVHDLRTIS 180
10 -6.310PF05531.12; B6S2D2_9ABAC/1-77; Nucleopolyhedrovirus P10 protein  ali follow..  14  9.............................................IRSDIKAVDTKVTALQESVNSIQENMPDVTQITE-ALQAQSEALATIESTVQKID 62

FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 1 7 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.