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Query: gi|15922994|ref|NP_370528.1| recombination protein F (SAV0004) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIKLast
1 -105.0005z68_A mol:protein length:373 DNA replication and repair protein RecF  ali model follow..  32  5MYLKEIFVDNFRNLKKQKLEFCEGVNLIYGLNAQGKSNLLEAIRLLSMGRSFRGSKMSELVKFDEEYFYVRGLVRSADFEKKIEFGYKVNGKVIKVNGNKLKSTGEILGHFLTVIFSPEDIEIIKEGPSRRRKYLDACISVIDKNYFFDLLQYNKTLSNRNSLLKKIKEEGK-GEDLLEIFDEKLAEYGARIIKVRNNYLEKLKNSMSKFLMEISNEKL--EIIYLNSAGVKEVHEENLIREKLKNRLTKSLTLDLKYLSTQVGPHREDFKILINGYDSRVYSSQGQKRTAALCLKLSELEILEEETGEKPVLLLDDVMSELDDNRKKYILKKLEG-FQSFITHTSKSDV-----EGDCCFKIYDGIVDK 367
2 -101.0002o5v_A mol:protein length:359 DNA replication and repair protein recF  ali model follow..  28  4VRLSALSTLNYRNLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLALTGQTDAP-RIEQLIQAGETEAYVRADLQQGGSLSIQEVGLGRGRRQLKVDGV--RARTGDLPRGGAVWIRPEDSELVFGPPSGRRAYLDSLLSRLSARYGEQLSRYERTVSQRNAALRGG------EEWAMHVWDDVLLKLGTEIMLFRRRALTRLDELAREANAQLGS-RKTLALTLTESTS----------PETYAADLRGRRAEELARGSTVTGPHRDDLLLTLGDFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTELAPGAALTAQAGRFTPVADEEMQA 355
3 -59.5003qku_A mol:protein length:359 DNA double-strand break repair rad50 ATPase  ali model follow..  12  1MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVLYWPLRIKDIKKDEFTKVGARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIH---AMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQ-----IDAILESDEAREKVVREVL-----NLDKFETAYKKLSELKKTINNRIKEYGGSGGIKDLEKAKDFTEELIEKVKKYKALAREA--ALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLA---GEISLLILDEPTPYLDEERRRKLITIMERIPQVILVSHD-EELKDAADHVIRISLENGSSKVE 356
4 -45.9003qkt_A mol:protein length:339 DNA double-strand break repair rad50 ATPase  ali model follow..  14  1MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVLYWPLRIKDIKKDEFTKVGARDTYI-------------DLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILESDEARE------------KVVREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIG----------ELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEIS---LLILDEPTPYLDEERRRKLITIMER-PQVILV-SHDEELKDAADHVIRISLENGSSKVE 336
5 -27.5005f3w_B mol:protein length:372 DNA double-strand break repair Rad50 ATPase,DNA double-strand break repair Rad50 ATPase  ali model follow..  12  3MILKEIRMNNFKSHVNSRIKFEKGIVAIIGENGSGKSSIFEAVFFALFGAGSNFNYD-TIITKGKKSVYVELDFEVNGNNYKIIREYDSGRGGAKLYSAVNKAVNEILGVLNSIYIKQGEIKFLSLKPSEKLETVAKLL---------GIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEMESLKARLKEMSNLEKEKEKLTKFVEYLDKV---RRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNL------SGGEQIAVALSLRLAIANALIGN--RVECIILDEPTVYLDENRRAKLAEIFRKVKSIMIIITHHRELEDVADVIINVKKDGNVSKVK 369
6 -27.2003qkr_A mol:protein length:203 DNA double-strand break repair rad50 ATPase  ali model follow..  17  1MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPRIKDIKKDEFTKVGARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHSAFMEKLIPYNIFLNAIYIRQGQIDAILESDEAREKVVREVL---------NLDKFETAYKKLSELKKTINNRIKEYRDILA............................................................................................................................................................................................... 192
7 -25.1003tho_A mol:protein length:382 Probable DNA double-strand break repair Rad50 ATPase  ali model follow..  11  12MRPERLTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNGIRYPNSYDYVNRNA-----------VDGTARLVFQFERGGKRYEIIREINALQRKHNAKLSEILENGKKAAIAAKPTSVKEKILGIEHRTFIRTVFLPQGEIDKLLSEITEIISDVFQSKETLEKLEKLLKEKMKKLENEISSGGAGGAGGSLEKKLKEMSDEYNNLDLLRKYLFDKSNFSRYFTGRVLEAVLKRTKAYLDILTNGRFDIDFDDEKGGFIIKDWGIERPA--SGGERALISISLAMSLAEVASGRLD---AFFIDEGFSSLCTENKEKIASVLERLNKVIVFITCDREFSEAFDRKLRITGGVVVN... 375
8 -22.6005xns_A mol:protein length:405 Chromosome partition protein Smc  ali model follow..  16  2PYIEKLELKGFKSYKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLSAKAMRASRISDLIFAGSKYAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSS-TRSEILDILTAAMISPDGYNIVLQGPLERRLLIDD---------ISGIAEYDSKKEKALEELKQAEENLARVDLLIKEVKSGGSGGSDF-VERRYLELKSKREKLEAEKESIIEFINEIEKEKKNVFMRTFEAISRNFSEIFAKLSPGGSARLILENPEDPFSGGLEIEAKPAGKDVKRIESGGEKALTALAFVFAIQKF-----KPAPFYLFDEIDAHLDDKRVADLIKESSKESQFIVITLRDVMMA................... 371
9 -21.8004i99_A mol:protein length:354 Chromosome partition protein Smc  ali model follow..  17  2PYIEKLELKGFKSYKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLSAKAMRASRISDLIFAGSKYAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRRRATRSEILDILTAAMISPDGYNIVLQGDITK--------------FIKMSPLERRLLIDDISGIAEYDSKKEKALEEEKEKKNVFMRTFEAISRNFSEIFAKLSP--------------------------------GGSARLILENPEDPFSGGLEIEAKPAGKDVKRIEAM----------SGGEKALTALAFVFAIQKF-----KPAPFYLFDEIDAHLDDKRVADLIKESSKESQFIVITLRDVMMA................... 312
10 -21.8003euj_A mol:protein length:483 Chromosome partition protein mukB, Linker  ali model follow..  11  7GKFRSLTLINWNGFFARTFDFDELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGKLKAGVCAVLETVNSRAQRIITGVRLQQIAGRDKKVDIRPFSLQNFKPYHSITDYHSFMFDLGILPKRLRSSSDRNKFYKLIEARDYLLPENSGVRQAFQDMEAALRENSGGSGGSI--SAESVANILRKTIQREQNRILQLNQGLQHEQHKDLFESQKLSFSEALAMLYKRINPHIELGQRMPQTIGEELLDDLEVETLRGAYGWMLSTGEAIGTGMSILLMVVQSWRAKDILPCRLLFLDQAARLDAMSINTLFELCERLDQLLIAAPE........................ 451
11 -21.6004aby_A mol:protein length:415 DNA REPAIR PROTEIN RECN  ali model follow..  11  40..LSRLEIRNLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLLGGRA-----NHDLIRSGEKELLVTGFWGDGDESEADSAS-SAGRGAARLSGVSVRELQEWAQGRLTIHWQHSAVSLLS--PANQRGLLDRRVTKEAQAYHAAWREAVSRLERLQASESSKHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSA-----------------------------LAEPAAYG---SDVLLRFSAGPLSDVASGGELSRVMLAVSTV-------LGADTPSVVFDEVDAGIGGAAAIAVLSRLADTRQVLVVT.......................... 353
12 -21.6004ux3_A mol:protein length:543 STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3  ali model follow..  13  2AYIKRVIIKGFKTYRNETINFSPHQNVIIGSNGSGKSNFFAAIRFVDDYSNLKREERQGLIHQGSGGSVMSASVERGDDEVTIRRTVGLKKDDYQLNDRNV-TKGDIVRMLETAGFSMNN-ALTNAKDKERLQLLEDVKIQINKEMGELNSKLSEMEQERKELEKYNELERNRKIYQFTLYDRELNEVINQMFNERRKDLAERASELDESKDSIQDLIVKLKQQKVNAVDSTFQKVSENFEAVFERLVPRGTAKLIIHRKNDNANDHDSISVSFNSKQNEQLHSGGQKTVCAIALILAIQMV-----DPASFYLFDEIDAALDKQYRTAVATLLKENAQFICTTFRTDMLQ................... 497
13 -21.4001w1w_A mol:protein length:430 STRUCTURAL MAINTENANCE OF CHROMOSOME 1  ali model follow..  16  2GRLVGLELSNFKSYRGVTK-GESNFTSIIGPNGSGKSNMMDAISFV-RSNHLRSNILKDLIYRGVQSAYVKAFYQKGNKLVELMRIISRNGDTSYKIDGKTVSYKDYSIFLNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQ--YKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHEYLSGGEKTVAALALLFAINSY-----QPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-FIVISLKNTMFEKSDALVGVYRQQQENSSK 419
14 -21.3001e69_A mol:protein length:322 CHROMOSOME SEGREGATION SMC PROTEIN  ali model follow..  17  1MRLKKLYLKGFKSFRPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVQSKKELRASEKFDMIFAGSESAYVELVFEENGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDR--------------IVNASPEELRLESSKHPTSLVPRGSYQRVNESFNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLL-----------------------------------------------------------SGGEKALVGLALLFALMEI-----KPSPFYVLDEVDSPLDDERFKRLLKENSKHTQFIVITHNKIVME................... 286
15 -20.6005xei_A mol:protein length:540 Chromosome partition protein Smc  ali model follow..  18  2PYIEKLELKGFKSYRKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLSAKAMRATRISDLIFAGSKYAEVAIYFNNEDRGFPIDEDYPDGRSAYWLNGRRA-TRSEILDLLSAAMISPEGYNLVLQGPLERRQLIDEILARVDLLIKEVKKQLDKLEKERNDALRYLDLKERLERARVALLLGEIKRLESMIMEAEIKALEPVNMKAIEDFEVVERRYLELKSKRKESIIEFINEIEKEKKNVFMRTLEAIAKNFSELFAKLSPGGSARLILE--GKDVKRIESGGEKALTALAFIFAIQRF-----KPAPFYLFDEIDAHLDDKRVADLIKESSRESQFIVITLRDVMMA................... 487
16 -19.8005xg3_A mol:protein length:435 Chromosome partition protein Smc  ali model follow..  15  1MFLKRLDVIGFKSFERISVDFVKGVTAVVGPNGSGKSNITDAIRWVQSARSLRGGKMEDIIFAGSDLAEVTLTLDNDDHFLPIDFHYRSGESEFLINNQPC-RLKDILGKEAFSIISQGKVEEILSSKAEDRRSIFEEAAGVLKYKTRKKKAENKLFETQDNLNRSIAKDYLEKKSGGSLIKLAIEELGTV-VNERYKFLSEQKEDLTEAKNTLFQVIEEMDEEMTKRFNDTFVQIRSHFDQVFRSLFGGGRAELRLTDPNDLLHSGVEIIAQPPGKKLQNLNSGGERALTAIALLFSILKV-----RPVPFCVLDQVEAALDEFRFAQYLKKYSSDTQFIVITHRKGTME................... 404
17 -19.6003zgx_A mol:protein length:426 CHROMOSOME PARTITION PROTEIN SMC  ali model follow..  14  1MFLKRLDVIGFKSFERISVDFVKGVTAVVGPNGSGKSNITDAIRWVQSARSLRGGKMEDIIFAGSDLAEVTLTLDNDDHFLPIDFHEVSVTRRVYRSGESEFLINNQPCRLKDIIISQGKVEEILSSKAEDRRSIFEEAAGVLKYKTRKKKAENKLFETQDNLNRQVEPLKIQASIAKDYLEKKGPGLGTVNVNERYKFLSEQKEDLTEAKNTLFQVIEEMDEEMTKRFNDTFVQIRSHFDQVFRSLFGGGRAELRLTDPNDLLHSGVEIIAQPPGKKLQNLNSGGERALTAIALLFSILKV-----RPVPFCVLDEVEAALDEFRFAQYLKKYSSDTQFIVITHRKGTME................... 395
18 -19.2005da9_A mol:protein length:449 Putative uncharacterized protein,Putative uncharacterized protein  ali model follow..  14  5EKLSILGVRSFGPHHPETIAFNTPLTLIVGYNGSGKTTVIECLKYATTGELPPNSTRNGAFIHDEVRAQVKLSFRSTIGELEGSLLLRNNGERTVISTR--KLVSEKLGV-AVIFCHQDDSLWPMSEPAALKKRFDEIFEA--QKYTKVIENIRLLKKKKGDELKILKEREVQDKANKERAEKVDGGA-KAAIEDLGRGMAAVDHAIMQYHSKMMEQINRTIAELWQSTYQGTDIDTIQIRSDVESTTSSDSGTRRNYNYRVS--VKGDTEM-----DMRGRCSAGQKVLASIIIRLALAESFCANCG---LIALDEPTTNLDSDNIRSLAESLQGNLQLIVITHDEEFLKYMQCSDFDFYRVKRDE... 433
19 -19.0005h68_A mol:protein length:340 Chromosome partition protein Smc  ali model follow..  17  4MFLKRLDVIGFKSFDRVSIEFVPGVTAVVGPNGSGKSNITDAIRWVQSAKSLRGAKMEDVIFAGSEVAEVTITLDNEDGFLPLEYQEVSVTRRVYRSGESEFFINRQPCRLKDI-------DLFLDSGLGKEAFSIIGQGRVEEILSSKPEERRTIFEEAAGVLKG-----------------SGGGSGEEMKKRFLTTFEQIRAHFGEVFGELGGGRADLRLT-----------DPNDLLETGIDIVAQPPGKKLQHLSLLSG---------------------GERALTAIALLFSILKV-----RPVPFCVLDQVEAALDEQRYAQYLKRFSRDTQFIVITHRKGTME................... 308
20 -18.9004ad8_A mol:protein length:517 DNA REPAIR PROTEIN RECN  ali model follow..  13  40..LSRLEIRNLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLLGGRA-----NHDLIRSGEKELLVTGFWGDGDESEADSAS-SAGRGAARLSGESVRELQEWAQGRLTIHWQHSAVSLLS--PANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLLVPRGSGSAADPEALDRVEARLAAEELAGLEEDERDAGSLQADVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN-GPLSDVASGGELSRVMLAVSTV-------LGADTPSVVFDEVDAGIGGAAAIAVLSRLADTRQVLVVT.......................... 455
21 -18.0001qhl_A mol:protein length:227 PROTEIN (CELL DIVISION PROTEIN MUKB)  ali model follow..  12  5GKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKKAGVCYSMLDTINSRHQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLPKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLRDYL.......................................................................................................................................................................... 221
22 -11.8003qkr_B mol:protein length:179 DNA double-strand break repair rad50 ATPase  ali model follow..  20  1...........................................................................................................................................................AEKENRERVKKEIKDLEKAKDFTEELIEKVKKYKALA---REAALSKIGELASEIFAEFTEGK-------------------------YSEVVVRAEENKVRLFVVWEGKERP------------TFLSGGERIALGLAFRLAMSLYL---AGEISLLILDEPTPYLDEERRRKLITIMER-PQVILVSHDEE...................... 155
23 -9.3902pjz_A mol:protein length:263 Hypothetical protein ST1066  ali model follow..  15  2IQLKNVGITERFSLENINLEVNGEKVIILGPNGSGKTTLLRAI-----------------------------------------SGLLPYSGNIFINGMEVRKIRNYIRYSTNL----------------------------------------------------------PEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALK-----------------------------------LGEEILRRKLYKL---------------------------SAGQSVLVRTSLALAS---------QPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYF-LVGNRLQG 206
24 -9.2006ha8_V mol:protein length:548 Nucleotide-binding protein ExpZ  ali model follow..  19  20.............FKHVNASVQQGDIIIIGKNGAGKSTLLHLI--LAPAQGQILRKDIKLALVEQETAAYSFADQTPAEKKLLEKWHVPLRDFHQLSGGEKLKAR-----LAKGLSEDADL-LLLDQPTNHRYFLDEAATKI-IEFKGNYSGYMKFREKKRLTQQREYEKQQKMVERIEAQMNGLSEKAHAQSTKKEGFKEYHRVKAKRTDAQIKSKQKRLEKELEKAKAEPVTPEYTVRFSIDTTHKTGKRFLEVQNVTKAFGERTKNANFTIQGEKVAIIGPNGSGKTTLLNIILGQIKLMAYILEEKDVLILDQPTNHLDLPSREQLEETLSQYSGTLLAVSHDRYFLEKTTN--SKLVISNNGIEK 483
25 -9.0802iw3_A mol:protein length:986 ELONGATION FACTOR 3A  ali model follow..  11  445.............LNKTQLRLKRARRYICGPNGCGKSTLMRAI--FPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIK-MIAMPISALSGGWKMKLA-----LARAVLRNADI-LLLDEPTNHSVFLDNVCEYI-RKYKGNFTEFVKKCPAAKAYIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEI----VSHSRIRGL-SGGQKVKLVLAAGTWQ---------RPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEE--VWAVKDGRMT. 971

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 8 0 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Topczewski J, Godzik A., Paszewski A. The Aspergillus nidulans cysA gene encodes a novel type of serine O-acetyltransferase which is homologous to homoserine O-acetyltransferases. Microbiology. 2000 Oct;146 ( Pt 10):2695-703.