current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|15922991|ref|NP_370525.1| chromosomal replication initiation protein (SAV0001) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450
# Score Template Links and tools%idFirst MSEKEIWEKVLEIAQEKLSAVSYSTFLKDTELYTIKDGEAIVLSSIPFNANWLNQQYAEIIQAILFDVVGYEVKPHFITTEELANYSNNETATPKETTKPSTETTEDNHVLGREQFNAHNTFDTFVIGPGNRFPHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLMHAIGHHVLDNNPDAKVIYTSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEEKLDIPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITTELTAEALKDIIQAPKSKKITIQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDHTTVIHAHEKISKDLKEDPIFKQEVENLEKEIRNVLast
1 -93.000d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  37  1.................................................................................................................DFLNPKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKK--RGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKL............................................................................................................................ 212
2 -42.700d1l8qa1 a.4.12.2 (A:290-399) Chromosomal replication initiation factor DnaA C-terminal domain IV {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  34  1.........................................................................................................................................................................................................................................................................................................................................................GFEGLERKERKERDKLMQIVEFVANYYAVKVEDILSDKRNKRTSEARKIAMYLCRKVCSASLIEIARAFKRKDHTTVIHAIRSVEEEKKKDRKFKHLVGFLEKQAFD. 107
3 -41.000d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  46  1......................................................................................................................................................................................................................................................................................................................................................................VTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS. 94
4 -16.600d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  18  7........................................................................................................................SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERG------------DVLFIDEIHRL---NKAVEELL--YSAIEDFQIDIMIGKGPSAKSIRLLSSPLRSRFG--IILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADINTDIVLKTMEVL....................................................................................................... 234
5 -15.800d2vhja_ c.37.1.11 (A:) automated matches {Pseudomonas phage [TaxId: 161736]}  ali model 3D-neighbors follow..  10  126.......................................................................................................................................................VIVTGKGNSGKTPLVHALGEALGGKDK---YATVRFGEPLSGY-NTDFNVFVDDIARAMLQHRVIVIDSLKNVIGAAGGSRGAFDLLSDIGARGCVVIASLNPTSND-DKIVELVKEASRANSTSLVISTDVDGEWQVLTRTGEG-------------LQRLTHTLQTSYGEHSVLTIHTS......................................................................................................................... 299
6 -13.600d2x8aa_ c.37.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  36.......................................................................................................................................................VLLAGPPGCGKTLLAKAVANES-----GLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPVIFFDEVDALCPRRSDREQLLTEMDGLEARQQVFIMAATNRPDII---DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNTKPPLDADVLEAIAGDLRCD-EASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSS................................................................................................ 256
7 -12.700d4cr2i2 c.37.1.20 (I:165-436) Proteasome regulatory particle base subunit Rpt2, C-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  15  55.......................................................................................................................................................VILYGAPGTGKTLLAKAVANQT-----SATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPIVFIDEIDAIGTKQRTMLELLNQLDGFDDRGDVKVIMATNKI---ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMVTAEDFKQAKERVMKNKVEENL.............................................................................................. 268
8 -12.600d4lcba_ c.37.1.0 (A:) automated matches {Acidianus hospitalis [TaxId: 933801]}  ali model 3D-neighbors follow..  17  39.......................................................................................................................................................ILLYGPPGNGKTMLAAAVANEI-----DSYFIHVDAASIMSKWLGEAEKNVAKIFNKKDNKPAIIFVDEIDALLGTYTSEVQFLKEMDGIMDKNENYVIGATNKPWR---LDEPFLRRFQKRIYVPL--PDFNQRLALFKYYTSKVKLGLAKMTEGYSASDIRDIVQSAHRVVKEMFEKNLSEPREITMDDFKEVLKIRKPSVNQELLK............................................................................................. 261
9 -12.300d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Pyrobaculum aerophilum [TaxId: 13773]}  ali model 3D-neighbors follow..  13  18.............................................................................................................................LPHREQQLQQLDIGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY-KDKTTARFVYINGFIYRNEIARSLNIALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMG---VIRFSPYTKDQIFDILLDRAKAG--SYSEDILQMIADITGADARLAIDILYRSAYAAQQNGRKIAPEDVRKSSKEV....................................................................................................... 273
10 -12.100d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  19  48.......................................................................................................................................................LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD--ERGINVIREKVKEFARTK-ASFKIIFLDEADALT--QDAQQALRRTMEM-FSSNVRFILSCNYSSKIIEPIQSRCAI-------FRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDK----KITDENVFMVA.......................................................................................................... 230
11 -11.700d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  13  34..................................................................................................................................ENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSEEAQNLNGKHFVIIMDEVDGMSGGD--RGGVGQLAQFCRKTSTPLIICNERNLPKMRPFDRVC-------LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENINEISKAWEKNI....................................................................................................... 253
12 -11.600d3d8ba_ c.37.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  64.......................................................................................................................................................ILLFGPPGTGKTLIGKCIASQS-----GATFFSISASSLTSKWVGEGEKMVRALFAARCQQPAVIFIDEIDSLLSQRGDGEEFLVQLDGATTSSEDLVVGATNRPQE---IDEAARRRLVKRLYIPL--PEASARKQIVINLMSKEQCCLSEEEIEQIVQQSD--------------AFSGADMTQLCREASLGPIRSLQ-TADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDL................................................................. 287
13 -11.100d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  17  6....................................................................................................................QIKTTFADVAGCDEAKEEVAELVEYLREPGKIPKGVLMVGPPGTGKTLLAKAIAGEA-----KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPIIFIDEIDAVGRQEQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLR--GRFDRQVVVGL--PDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVSMVEFEKAKDKIM...................................................................................................... 253
14 -11.100d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}  ali model 3D-neighbors follow..  17  43.......................................................................................................................................................VLLEGPPHSGKTALAAKIAEES--------IKICSPDKMIGFSETAKCQAMKKIFDDAYKSLSCVVVDDIERLLDYVPIGPRFSNVLQALLQGRKLLIIGTTSRKDVLQEME--MLNAFS----TTIHVPNIATGEQLL--EALELLGNFKDKERTTIAQQVKGK-KVWIGILLMLIEMSLQMDPEYRVRKFLALLRE........................................................................................................ 239
15 -10.800d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}  ali model 3D-neighbors follow..  11  9...................................................................................................................FDENYIPPELR-GEAEALARIYLNRLLSGLSDVNMIYGSIGRVGIGKTFTVKRVSEAAAKEGLTVKQAYVNLYTILSLIVRQTGYKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEENRIGFLLVASDVRALSYMREKIPQVES-GFKLHLPAYKSRELYTILEQRAELG--VWEPRHLELISDVYGED-KGGDGSARR------------AIVALKMA-CEMAEAMGRDSLSEDLVRKAVSE................................................................................... 286
16 -10.700d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  2...................................................................................................................LARKWRPQTFVVGQEH----LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLREIEQGRFVDLIEIDAASRTKVEDTRD-DNVQYAPARGRFKVYLIDEVHMLSR---------HSFNAL-------LKTLEEPPEHVQKLPVTILSRCLQFHLKALDVEQIRHQLEHI---LNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG---DGQVSTQAVSAML.......................................................................................................... 237
17 -10.100d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  16  20.......................................................................................................................................TNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESITASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVKCVIINEANSLT--KDAQAALRRTMEK-YSKNIRLIMVCDSMSPIIAPIKSQC-------LLIRCPAPSDSEISTILSDVVTNERIQLEKDILKRIAQASNGNLRVSLLMLESMALNNELA....................................................................................................................... 244
18 -9.020d1w4ra1 c.37.1.24 (A:18-150) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  6........................................................................................................................................................VILGPMFSGKSELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTALPACLLRDVAQEALGVAVIGIDEGQFF-------PDIVEFCEAMANAGKTVIVA---------------------ALDGTFQRKPFGAILNLVPLAESVVKLT......................................................................................................................................................... 133

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 7 3 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Topczewski J, Godzik A., Paszewski A. The Aspergillus nidulans cysA gene encodes a novel type of serine O-acetyltransferase which is homologous to homoserine O-acetyltransferases. Microbiology. 2000 Oct;146 ( Pt 10):2695-703.