current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|15923001|ref|NP_370535.1|(removed signalp:1-29) hypothetical protein (SAV0011) [Staphylococcus aureus subsp. aureus Mu50], from S.aureus

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80
# Score Template Links and tools%idFirst SKVQLPDVVVRWLSFIPITLFTALVIDSIIQQTPHGEGYTLNIPYIIALIPTVILSIITRSLTITIISGIVIMATLRFFFLast
1 -5.600d1p8ba_ g.3.6.4 (A:) Pab1, subunit b {Pea (Pisum sativum) [TaxId: 3888]}  ali model 3D-neighbors follow..  19  8SPFEMPPCGTSACRCIPVGLVIGYCR...................................................... 33
2 -5.200d1o75a3 b.120.1.1 (A:7-206) Tp47 lipoprotein, N-terminal domain {Treponema pallidum [TaxId: 160]}  ali model 3D-neighbors follow..  18  137EEYKITNVKVHGMKFVPVAVPHEFVEDSRVTENTNGLKTMLTEDSFSARKVSSM.......................... 200
3 -4.750d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  21  27............................................YFMVGAMGLLSSAGAKSTVETFISSMTA........ 54
4 -4.560d3rlff1 e.70.1.1 (F:10-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  1.......WQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLF. 72
5 -4.440d3raoa1 c.1.16.0 (A:2-348) automated matches {Bacillus cereus [TaxId: 222523]}  ali model 3D-neighbors follow..  15  63................AWTTAAALAAVTDRLEIMTAVRPGFHNPAVTAKMAANIDQLSNGRFTLNVVSA........... 115
6 -4.350d1dq3a4 d.95.2.2 (A:227-335) PI-Pfui intein {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  1....IPPQILKEGKNAVLSFIAGLFDAEGHVSNKPGIELGMVNKRLIEDVTHYLNAL....................... 53
7 -4.300d1jvaa3 d.95.2.2 (A:582-698) VMA1-derived endonuclease (VDE) PI-SceI {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  1GVKNIPSFLSTDNIGTRETFLAGLIDSDVTDEHGIKATIKTIHTSVRDGLVSLARSL....................... 59
8 -4.210d2x42a2 c.23.11.1 (A:320-599) Beta-glucosidase middle domain {Thermotoga neapolitana [TaxId: 309803]}  ali model 3D-neighbors follow..  148GDFYLSDDETDLIKTVSREFHEQGKKVIVLLNIGSPVEVVSWRDLVDGILLVWQAGQETGRIVADVLTGRI......... 218
9 -4.080d1ztda1 a.149.1.2 (A:2-125) Hypothetical protein PF0609 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  10  2........IDKGLAKFGDSLINFLYSLALTEFLGKPTGDRVPNASLAIALELTNLRRVDKHAKGDYAEALIAKAWLM... 74
10 -4.030d1pp9e2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  13  36...........................................SYLVTATTTVGVAYAAKNVVSQFVSSMSA........ 64

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 7 3 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Topczewski J, Godzik A., Paszewski A. The Aspergillus nidulans cysA gene encodes a novel type of serine O-acetyltransferase which is homologous to homoserine O-acetyltransferases. Microbiology. 2000 Oct;146 ( Pt 10):2695-703.