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Query: gi|16759009|ref|NP_454626.1| hypothetical protein (STY0016) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in COG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNPIIDGIIALEGGYVFNPKDKGGATHWGITEATARAHGYAGDMRDLTHAEAYAILEEDYWIKPGFDVISTLSWPVSFELCDAAVNIGDYHPSAWLQRWLNVFNHEGKRYPDVHVDGNIGPRTLAALEHYLAWRGQEGEAVLVKALNCSQGMYYLNVAEKNHNNEQFIYGWIKNRVTLast
1 -72.700[R] COG3926 Putative secretion activating protein  ali follow..  25  6ERESLARVLAHEGGYSNHPNDPGGPTMKGVTQRVYDGFRKTRSVKSITTAELNEIYDRQYWDAVQGDAL---PAGVDYVVFDGAVNSGPGRSIMWLQQALRP-------AYTGRIDGVLGMGTLAALKAD------KNNDALIDRICSARMAFLKHL----STFGTFGRGWTARV.. 165
2 -13.300[M] COG3409 Putative peptidoglycan-binding domain-containing protein  ali follow..  16  88..................................................................EPVADIQRRLGIYD-DGIFGSATYSAVVDFQRRIDREFHRNGYSDPLALDGIVGAQTWYYLK................................................. 148
3 -6.210[O] COG5664 Predicted secreted Zn-dependent protease  ali follow..  13  133WQTFIAGVKKHELVHGDFIKEMVSAIEAATVGLAVADDPQCRKIKSEMTKRLGEISRAQRQKSRDFDKAELSDGGNVHQLILNLVNGG......................................................................................... 220
4 -6.180[S] COG3784 Uncharacterized protein conserved in bacteria  ali follow..  16  10..............................................................................................VWAIGLMSDSAMALTLNEARSQGRVGETLNGYLVALQT---DAETQALVKDINEARNHSYQQLAKQNNVSARAKSGWLRK... 108
5 -6.170[P] KOG2332 Ferritin  ali follow..  17  201...........EKGFRSHQSTGFTLTVEDLVEAVFKSVALENLLSPSSKAPGVQLYQRTYHTDSGLQKLFLLKTAYKLSLFKAQYNTGKAMEKKVLKVVLQCLNTTG---------GALGLSKVSAISKRMCFQGIQKE...................................... 344
6 -6.130[C] KOG3466 NADH:ubiquinone oxidoreductase, NDUFB9/B22 subunit  ali follow..  12................................................KRQVCSLYKRALRNLESWYDRRNVYRYRAVQLFDENRSKDLGEGIRLLACGQRELFETRHFQPRNFANSAGGCA----------EREVIPPDWVLDYWHPLEKAQYPEFAKREQRKKEFVTWWEKQ... 132
7 -5.740[R] COG3179 Predicted chitinase  ali follow..  13  128.QAIANWVYGARLGNLGRNTNDGGS---GFMQLTGRTFRMRGRDIGLPLEDSPELARKAYWKARNINAAADNNDRVRILVNGPAAH-GFEQSTVFFSQAWSRVFKAKQNELGLPETGELDEATKDELLDPREWRYADEIDA.................................... 333
8 -5.720[L] COG3298 Predicted 3`-5` exonuclease related to the exonuclease domain of PolB  ali follow..  10  104FNEKQPRLISFNGRGFDIPLLTLKALKYNLTLDAF-----------YSQENKWENYRARYSEQFHLD------------LMDSLSHYGSVRGLNLVCSMTNIPGKFDVSGDLVHNPHLSQKEKKGIIDGYCQSDVLNTYWLFLEQYLGLLNDFLAKFPKEKSYSSVFINALEKEI.. 272
9 -5.670[E] COG0135 Phosphoribosylanthranilate isomerase  ali follow..  10  47WLSQVCVEKQVAGVFVNESIETMSRIAEDLNLDVIQLHGDEEPADALRMLTDCEIWKALHHHENTTQEIARFKDDVDGFVIDSSVKGARGGTGVAFSWDCVPEYQQAAIGKRCFIAGGVNPDTITDLASGIEKNGQKDQNLMRLLEERMNR.......................... 209
10 -5.640[E] COG0703 Shikimate kinase  ali follow..  10  144.......VLATGGGSVKSRETRNRLSARGVV--VYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIRTDDQSAKVVANQIIHMLESN....................................................................... 240

FFAS is supported by the NIH grant R01-GM087218-01
1 2 2 2 5 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.