current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|16759004|ref|NP_454621.1|(removed signalp:1-23) hypothetical protein (STY0011) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110
# Score Template Links and tools%idFirst NDHKILGVIAMPRNETNDLALKIPVCRIVKRIQLTADHGDIELSGASVYFKTARSASQSLNVPSSIKEGQTTGWININSDNDNKRCVSKITFSGHTVNSSDMARLKVIGDDLast
1 -5.590HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;  ali follow..  11  55...DTLDSLTITAFGTDSIILNNQKRVHGLSLPLRYTADSTVL--VFHYSKDVKIKKDTIVIRQKNTPYFLSM-QSITGRSYSRHLLDSIYIQTAEVSIYGTENLKLFYRN 166
2 -5.490PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  192..........................................ICTYTYEVRNVKNMEYMTQACGSL-SSMAPSMLFANEELDRECVTVPFETELHLESSKMTGKFYTFG.. 257
3 -4.080PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  71.............HGRSASLKITIDENLFPLLSIKSNNGRLAIRQYVIEGSSKTLKYLKTSGPMDFEAQNAFSEDQLEIKISGSSDVK-----FPHNVKLRLGEFSVSG.. 171
4 -3.420PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]  ali follow..  10  117......................................GGITVQGSASNVQVKQENNGNVYLSMSVQGIFISATVNLVLYSGTNNAMVTVD------PNFSGNNLTMNGT. 182
5 -3.310HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679;  ali follow..  11  135.........................................RMLLVKVTYGMDFGRKRKTAAKRIQNEDTDTGILK................................... 169
6 -3.070PB007486 gi|154484254|ref|ZP_02026702.1| hypothetical protein EUBVEN_01966 [Eubacterium ventriosum ATCC 27560]gi|149734731|gb|EDM50648.1| hypothetical protein EUBVEN_01966 [Eubacterium ventriosum ATCC 27560]  ali follow..  358.............KTKGQLLQICNSQAEIKIENILVRDNSLKAIKTCIIYISSDDRHPICCQCRESN----EHGIDAEGIEGNDEYFLNWKVEQVNANMLNADEVEI.... 451
7 -2.990PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]  ali follow..  13  74..........................................................KQTIKQLNAQGVQLSNIKITDEN--DRVARKYGIDYEVGADPPKYLVFFKAKD 132
8 -2.970PB023339 Q8A4U7_BACTN/1-171 PB023339; Pfam-B_23339;  ali follow..  84EKWIPYFKIDYAYSSNEITLVYARWNNSHRAY-------DDSVEKSVYELND---------------ANMPIAYMNYKWNDYKWIEESAGNWAMNIQTPVTDEADLLLA.. 170
9 -2.880PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;  ali follow..  13  111..............................KFRLYYTAQGDEAHNFIVVVEDNFGNSYELEFDFNNRNVKDDGVITVVPIGN............................. 162
10 -2.720PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;  ali follow..  10  69................................LLPYLSADTQSLQLSSFDRSGGDFDKNGTGGCLAPGGAGCVIAEDHGAG----EVDSIWLTRDGGNLRAIGNIRVE... 145

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 9 1 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Database searching by flexible protein structure alignment. Protein Sci. 2004 Jul;13(7):1841-50.