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Query: gi|16759007|ref|NP_454624.1| putative regulatory protein (STY0014) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSKGANKSFDYNLIKILDAVILSGNAAMAAKKLGITPAAVSLALKRLQSYYPEELFSRGKGGLIPTAKAVDIHQNFSQVMKLVDDTFLCNSKKDEAFQITLLGSDIVESYYLSQLYNSDIFDRILINHFSVRNMSREHISELLFTAQGDLLISAEPLLESGIENQIIDSFKSFVCICSSKHMLSTLSQLSLHHFYSSRHALYQPGMGASVIYHDSELFKDELYYTGRRIVGYRSDSLNGLMSMIERTSLIALMPLKLALFYKNHRKYDIKFIQPPPELAFKSVQVYASWKKNSRNISTINEMVSMLQTLSSFRRLast
1 -4.070PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  15  154...............SSFEDI---DMAVHTIWKESPSDEEMRHAGKVMTELDGTELFTRITERLTDEAMSERLAKAMAVFVDTVNMTVTQQKEKVFVIPDNIEEFDF................................................................................................................................................................................................................ 242
2 -3.690PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  15  1MIRRSSEEVLQFSDMAMLGRIDEPRKVWTPSDFVDLSRDAVDKTLQRL---TKAEALRRIDRGLYDQPGFNKL.................................................................................................................................................................................................................................................. 82
3 -3.390PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  16  154...............SAFEDI---DMAVRTIKKDSPSEAEMRHAGKVMTELDGTELYSRITERLTDEPMSERLAKAMAVFVDTVNTTVAQPKTKVFVVLDNIEEFEIRN.............................................................................................................................................................................................................. 244
4 -2.950PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  268............TLARVY---VEQKNFSKA-RILSLKYPEFADQIRAIEKLQEN..................................................................................................................................................................................................................................................................... 313
5 -2.940PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  112.........VQIKLAPVNAPYFDGAKLLIAADCTAYAYASFHEKFIKGHVTLDSVDYSEKLTEIIRRNDIQSVVPCCGGLEMAAKKALQDSGKFIPWQVATISID.................................................................................................................................................................................................................. 219
6 -2.890PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)  ali follow..  1...........MKAIRHFITITHHKLVMQGCFRIGLYKQGLLHDMSKYSPT-----GCRYYKGYMSPNNAERADRGYSSAWL......................................................................................................................................................................................................................................... 71
7 -2.880HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;  ali follow..  116.................YTQIAKYNTFLENITDCPMEESKKEQWSAELRFYYTDPMPLKDEANSISQTPQTEVYSQVEKDLKTAIDLLPVHYLRGIWRLPG...................................................................................................................................................................................................................... 215
8 -2.770PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;  ali follow..  14  147............TVTNAETLISELEGKPRQVNRLAATRIMRVLTFQRLTDVYGDVPYFDAGKGFTPHYTRQDLHDELRAAVDQFDASQPTFGGAD............................................................................................................................................................................................................................ 239
9 -2.290PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  136...............VTPDDLDNAGNVLFKLNDADKDEEKSLRAALTLHTIRETDLFEIFSSQVENKNVIDSL---MGKYLDGNGNPLSVRKT-VVPVSDGW..................................................................................................................................................................................................................... 220
10 -2.190PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali follow..  15  104..........DSKTVESLGKELKASGLDAAAVKLNEQADWYETHEKSLSKAVR----VVESKAAKRLDDAKNLTAKLDEASKLLADS.................................................................................................................................................................................................................................... 191

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 9 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Database searching by flexible protein structure alignment. Protein Sci. 2004 Jul;13(7):1841-50.