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Query: gi|16759011|ref|NP_454628.1| putative chitinase (STY0018) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MATSKLIQGDTITETTHAANGFDPATSDDKISYTSARVAKPVYNKYKNSTTKPKVFGYYTDWSQYDSRLQGNMSQPGRGCDLTNVSPTAYDKLIFGFVGITGFRKIDKEDRDVVAEAAALCGKVKYEPTFLDPWGDFQSYINLGFETSGWDVDPKTVTQANAKGMLGALRDMQAKAKAAGHTLALSMSIGGWSMSNGFHETAASDSSRKTFAKGVVKLFKQFPMFSEVDIDWEYPNDEGAGNPFGAEDGANYALLIAELRKQLDSAGLSNVKISIAASAVTTIFDHAKVKDLLAAGLYGINLMTYDFFGTPWAETLGHHTNRKALEEGGWAVETIVDHLLAEGFSADRINIGYAGYTRNARQVEIESLSPLKGSYNPGSGDTTGSFESGTSEWYDVIYSYLDLENQKGRNGFNVYTDQVADADYLYSPESKLFLSLDTPRTVKAKGEYAAKLGLGGVFTWTIDQDNGVLVNAVREGLGYEIESEVIDMEPFYFEGINVEKDDEQSDSDDAQKVNHAPKAAIELMVVGGSTVQLSGAGSSDEDNDELSFSWGVPSQIDVADKTAEIIEVVVPEVSEKTAFQFTLFVRDCYNEPSSQQRFVLTAVPALSQVQPEPEEEEEIIVPVPDEEEETTPAEDDTSADDKTSPYAQWDASTVYGANWGSFEIVSWKGHNYQVKWWSMGNQPDLNCGVGGAWTDLGAYLast
1 -4.670PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;  ali follow..  17  14...............................................................................................................................................................................LKEYGKNIQKIVD---------WILTIEDREQRTRYANTCVELMRTTKLWD-LDVDTPYPMPDIAVLGRKPERGKNINLLIEQAILKEDGAEKEDAIIYLGRLMKRLYSTWNKENVDDEVIVEHLSELS........................................................................................................................................................................................................................................................................................................................................................................................................... 166
2 -2.710PB000790 _Gut.Meta.Jp.0111831_ gi|163310496|dbj|BABD01000203.1||3 (- 2591:4589~0 complete)  ali follow..  11  230..................................................................................................................................................................................APWESYFLLAEYGW---------ISNITPKEAYELGIRSSFEYFGVSEYAD---QYINSTTRNRLGTSVAFDDTVEPTSEVMTYRDGYTNTDQIQEVVYNTASKTLYGKAMNDHLTKIITQKYIAQMPYQVEIWND------------------------HRRLGLP--FFEIP----------ANESDLIGSDMVNVLKKDSWKNGQQWDFYPQR---------------------------------------MRYPTTLDNADPENYQKAELLGGTPLW............................................................................................................................................................................................................................................... 436
3 -2.580PB028090 gi|167758043|ref|ZP_02430170.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]gi|167663940|gb|EDS08070.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]  ali follow..  13  64.............................................................................................................................................................................AEWALNNPTY---VHMNSWHYAKLYAATAGCKIGKTNWFKVFPFVIVAINILIAVVSDFESGVRGAMALAEYGDRWWLSSENVWLYGGWWNWVNGIAGILNILCMTGWWGIYSSKDKDMLWPDMTWCFIIAYDL----WNFEYTYNN-------PTHAWYCGLALLLAPTFANALWNKGGWIQNRANTLA................................................................................................................................................................................................................................................................................................................................................ 252
4 -2.500PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  10  1...............................................................................................................................................................................MKTKFIYVVLMALF---SQMTLSAQNEENKERKQRPTPEQMMQMQTNQMVRALMLD--------------DATAAKFTPIYEKYLKELRECRMMNFKPRARKDAAQGTEANTAKETPKPVMTD--------------AEIAKMLKDQFAQSRKMLDIREKYYNEFSKILSQKQIM............................................................................................................................................................................................................................................................................................................................................................. 146
5 -2.480HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;  ali follow..  10  5...............................................................................YNTLGMTKACLCALAVSLVTTGCSDLLDKEPPSAISDGSFWTGEGDAMLALTGCYRFQTGWSHDDFATPQGLLYLDFAGGNGTEKENFSTLMASSNTVATNSNLRWY-----WGNAENITDCPMEESKKEQWSAEV-KCLRAYFFLNLAFYYTDVPSVDEANSISQTPQTEVYSQVEKDLKTAID................................................................................................................................................................................................................................................................................................................................................................................................................................................... 200
6 -2.380HGC00878 gi|162869432|dbj|BABB01000575.1|7.0 TMP01167;  ali follow..  17  6..................................................................................................................................................................................................TNIFHARTENKTDLDKIEDFLDDTFSEFTNRYGDSVDWVYP-------------EEEIKKLVESLEDK------------------------------------YIKILTYEFSQGEWK.................................................................................................................................................................................................................................................................................................................................................................................................. 94
7 -2.310PB002776 gi|157737147|ref|YP_001489830.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]gi|157699001|gb|ABV67161.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]  ali follow..  148........................NDNLQNLQFLLNFYSHYLEVIEQFTYPKYYIASFLKEWGHYGQGH------SG---------------VCLIF---------ETNNEGEIPFLNVYTGLKLKEVNYNGNFEEINFFESLGKIPQPLVESFYIDENKNKSILFDKVLNNQEEWRKLFWDKKNKLT---WTYEKEY-RIVLNRLMDYEIKEEDRKLKYDFNCLKGVIF----------GIKTPQNKKDEIIEIIINKCHENNILDFEFYQAFYCKESKNIQHKKLDVNIINDLI------QNKLDLNIEF................................................................................................................................................................................................................................................................................................................................................................................................... 401
8 -2.210HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  4................................................................................................................................................................................................NYKRQRMNIFDIAKQNQEKAWQVIKNTNIIQIWEDAGAKINLVGSLRTGLLMKHRDID-----FHIYSSPLNLTDSFQAMARLAENPSIKRIECANLLHTAEACI-EWHAWYQNEENELWQMDMIHIREGSRYDGYFEKVAQRISEIMTD--EIRETILRLK----------------------------------------------------------ETPETEKIIGVEYYQA-----VIRDGVRDYSGFKEWRKQHPVTGVVEWM.............................................................................................................................................................................................................................................. 202
9 -1.980PB162065 _Gut.Meta.Jp.0089312_ gi|162832207|dbj|BABA01012502.1||1 (- 0:1326~0 complete)  ali follow..  10  6.....................................................................................................................................................................FQKTLKALETVCEGAEVGFITITM---DVDLATADALKRAAASMGIGAQLLALESHRLSYHDVGL-FEY-DRRGLRYHHLSVSWKHHPPVVTAETTVLNQYLDGHELADPVPPEMDRQFLEAIKEVSARRMISTYYLMGEGFSGASW-------------------MNLSLKQLCAM---KRHVFAGQNLYARGACYHSFDQGSFGRKPGFIAANAGLLTKDIYLRSVHKHAPQKLILAAASAVSRKAIIIDGQEQLIIRMNFEQTVVMTLDATTKLLIETSFVTDMGFGEIFVW............................................................................................................................................................................................................................................... 322
10 -1.970PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]  ali follow..  2.............................................................................................................................................................................QSEDSRHSKYVIRIICEG-TEPLFFTSLEKPSMADRGLYKNKKKRVKGKK--EGVDEAW---------------DKDEHPARKDAFEEAEKLIDDKKVNIAFSSR-------------------------SFEY----Y-----H----FEYLYHPFHATECGE----------RIDGKKVNYNCMTEKSKENACHGEKCINGYARLKKYWNETKTSQSTFPLIEKRLKAGIINAKRLRIESNSKENCPIYDRNPYTNVDKLVCR..................................................................................................................................................................................................................................................................... 258

FFAS is supported by the NIH grant R01-GM087218-01
1 2 4 1 8 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.