current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|16759012|ref|NP_454629.1| hypothetical protein (STY0019) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380
# Score Template Links and tools%idFirst MIQAPVYRGFSPPGTEEEQTMTISIHASAFDVNSWYQKITLTFINESGNPVDMNHAAISFTASGHIDPWGNSGGTLKGNPPLTLNDSSYGTLETNNIIINNSDALLLQPGERGTLSFSLAATQVPVKMSAVTLTLASSSSEDAESATPSDQETPAIPAADEQPAESDVPEKDNDLQERGLTLNVSELNAASWYQHVTFTLTNLYAQAVDLNQLQLNFTASAHPDPYSPFQGTMLGNQAVTLASDGGWPIEKNTITINHDGALMLAAGDIAELQCYLAATQTPVAISDLNATLAHDPAHQGKICVHFPAMTQTVALKPVIELLFPAGETRRFVGEWGEVLTISDLSAGTYRLIVPVLANDEMQIAPVESSFTVTLQSGDAAAQVLast
1 -4.410PB009233 Q7MX23_PORGI/1-175 PB009233; Pfam-B_9233;  ali follow..  20........LGICLAVSCTYRKDERILYRQVPHGRWQKRDVLDYE------ILIPDYTRSYSLELLIRHDNRYEYRDLALAYEVSVGERLIFADSVDLTLADKPQQWNGKGYSGLYKIELKHNMRVPTLTEVGIRLTEGRDSPPPSILPQ.......................................................................................................................................................................................................................................... 174
2 -3.780PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  10  26LKDILNSSAVKNAVTSVTGGKAVTFENLQ---GTWMYVNPALQLEGDNALKNVAGSLAATEAEKKMKEYCAKVGIVEGVFNYVFNSDSTFTSALKRGSLK---GTYSVSPEDKTVTLRYTVGNKKLTVSTLTAHVVLSGNE.................................................................................................................................................................................................................................................. 160
3 -3.750HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;  ali follow..  10  71.......................................................................................................................................VYSLGRGIGAVNSMIHHDEVYAISRDATPAPKKVSNVKDCSASDVTLQLSAASQS----DFTATIVHEGSGNVDGSDSGRVLTI-----------------------TSGQETIYKSDVCPADSRLLLMAKGDKDVQKVTWNTNANATLAKCTD---GWAKVNAGTYVAQLSLKDHPKVKSDPVTFT............................................................. 238
4 -2.810PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  35..........................................................................................................................................................................................................................................................................................................WGEVVDEATGKRDQGSEGIRVRLTENVQHNPDFYCMMDGTFQNTKIFKGEYNVRIDLVRENTDGTLLHDGSVNTEISGTTKV... 129
5 -2.370PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  12  36............................................................................................................................................................................................................................................................................................................RVDFDWKNAPQADPEGMCVYFYPEEGESPIRFDFAGKDGGSVEIKEGRYRILCYNNDTESLLFRGMEGFDTHEGYTRDGNVF. 117
6 -2.340PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  11  14........LLAVAGANAQESAEFRPAELA---GIWQLCHYVSEIPDVPGILKPSNTFKVLSDDGRMIPGKDAIITGYGTYQQLTDNS--------KESIEKNIHLPMLDHKDNILEFEIGDDG.................................................................................................................................................................................................................................................................... 123
7 -1.830PB012954 Q5LF97_BACFN/1-383 PB012954; Pfam-B_12954;  ali follow..  34IGYEKTLHLIFP---TEVKYYSIGGDYVIGEKVV-NCPGIIRLKAAEENFPGETTLSVVTADPHTLPVGKEKQLFLIFPAGITYVDYGSTNVEVDKAEGVDNTNISVVLEGGKFYTFDLRYVPAPER---FSFVIDKEDTQRVAILDEKERSYGQKERIREAVAKRTPLDLGLRDKNSGMEFEVGNIFIDGDVLLLRMTLTNRTQIGYTTDFMRFYIQDAKIRKKTAVQQLEQNILFTFDYPEEIPAHESRTFTVA---NKFTIPDKKRLIIEIQERNGG-----RHFLYKLKNKSLLTAEEVFRSRKQQETEDEADKI................................................................ 378
8 -1.510HGC00878 gi|162869432|dbj|BABB01000575.1|7.0 TMP01167;  ali follow..  15  52....P-EEEIKKLVESLEDKDKVYIKILTFSQGEWKVKLVTE..................................................................................................................................................................................................................................................................................................................................................... 100
9 -1.440PB038401 Q8RFH0_FUSNN/1-210 PB038401; Pfam-B_38401;  ali follow..  1.................................................................................................................................................................................................................................................................................................MDIGPCSIPTGEFLVGDPLVYLGSKYEKEYFQ---------------------KIPTGEFRTEICVVKASDGD-CDRYAAVRLKFNDNEIS... 69
10 -1.410HGC00870 gi|163286116|dbj|BABD01024572.1|2.0 TMP01154;  ali follow..  87FSDNRLNQALAALRKSGAGTFPY--AILTPTNQNWNALQCFSEIRREHETIQKQLK....................................................................................................................................................................................................................................................................................................................................... 141

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 9 1 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Database searching by flexible protein structure alignment. Protein Sci. 2004 Jul;13(7):1841-50.