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Query: gi|16759012|ref|NP_454629.1| hypothetical protein (STY0019) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIQAPVYRGFSPPGTEEEQTMTISIHASAFDVNSWYQKITLTFINESGNPVDMNHAAISFTASGHIDPWGNSGGTLKGNPPLTLNDSSYGTLETNNIIINNSDALLLQPGERGTLSFSLAATQVPVKMSAVTLTLASSSSEDAESATPSDQETPAIPAADEQPAESDVPEKDNDLQERGLTLNVSELNAASWYQHVTFTLTNLYAQAVDLNQLQLNFTASAHPDPYSPFQGTMLGNQAVTLASDGGWPIEKNTITINHDGALMLAAGDIAELQCYLAATQTPVAISDLNATLAHDPAHQGKICVHFPAMTQTVALKPVIELLFPAGETRRFVGEWGEVLTISDLSAGTYRLIVPVLANDEMQIAPVESSFTVTLQSGDAAAQVLast
1 -15.300sp|Q8N2E2|VWDE_HUMAN von Willebrand factor D and EGF domain-containing protein OS=Homo sapiens GN=VWDE PE=2 SV=4 (Range: 348-424)  ali follow..  2...................NLALSSCHVDLLQTSSCAHTFVYYTAVTDFSRDGDRVSNIVVQPI-VNEDFLWNNYIPDSIQIKVKDVPTA..................................................................................................................................................................................................................................................................................................... 76
2 -5.320sp|P08F94|PKHD1_HUMAN Fibrocystin OS=Homo sapiens GN=PKHD1 PE=1 SV=1 (Range: 2053-2142)  ali follow..  14  1..................ATAHALDTVLALDAVDWNPGDEVVIISGTGVKGAKPMEEIVTVETVQ.............................................................................................................................................................................................................................................................................................................................. 48
3 -5.270sp|Q6Q759|SPG17_HUMAN Sperm-associated antigen 17 OS=Homo sapiens GN=SPAG17 PE=1 SV=1 (Range: 1-77)  ali follow..  15  1...MAPKKEKGGTVNTSSKIWEPSLIAAQFNQNDWQASIAFVVGNQIED.............................................................................................................................................................................................................................................................................................................................................. 46
4 -5.170sp|Q8WUJ3|K1199_HUMAN Protein KIAA1199 OS=Homo sapiens GN=KIAA1199 PE=1 SV=2 (Range: 404-588)  ali follow..  2...KPVRPKLTVTIDTNVNSTIL---NLEDNVQSWKPGDTLVIASTDYSMYQAEEFQVL-----PCRSCAPNQVKVAGKPMYLHIGEEIDGVDMRAEVGLLSRNIIVMGEMEDK............................................................................................................................................................................................................................................................................. 104
5 -5.160sp|Q86WI1|PKHL1_HUMAN Fibrocystin-L OS=Homo sapiens GN=PKHD1L1 PE=2 SV=2 (Range: 3174-3241)  ali follow..  12  1..................ETAFAGSKVLSLDAVDWQEGEEIVITTTSYDFHQTETRSIVKILHDH.............................................................................................................................................................................................................................................................................................................................. 48
6 -5.030tr|A4D115|A4D115_HUMAN LOC389466 OS=Homo sapiens GN=LOC389466 PE=4 SV=1 (Range: 38-111)  ali follow..  10  1LDQRPKAAIMETLSLSSAFESYSVISEIGL----QAKENFGELLSLSDCLTAGNHPKV..................................................................................................................................................................................................................................................................................................................................... 73
7 -4.800sp|Q8NFD5|ARI1B_HUMAN AT-rich interactive domain-containing protein 1B OS=Homo sapiens GN=ARID1B PE=1 SV=2 (Range: 1600-1689)  ali follow..  10  19IVTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVATFNLSQLSG............................................................................................................................................................................................................................................................................................................................................... 66
8 -4.760sp|P08F94|PKHD1_HUMAN Fibrocystin OS=Homo sapiens GN=PKHD1 PE=1 SV=1 (Range: 2873-2934)  ali follow..  10  1..................ADIASGNERIIVDAVDWRPHDKIVLSSSSYEPHEAEVLTVKEVKGHHV............................................................................................................................................................................................................................................................................................................................. 49
9 -4.630sp|Q5VTL7|FNDC7_HUMAN Fibronectin type III domain-containing protein 7 OS=Homo sapiens GN=FNDC7 PE=2 SV=2 (Range: 658-734)  ali follow..  12  2.............................................................................................................................................................................................................................................................................................................................STDLYGSKGIFTCTPSAGLSFCDVTEIPCGDYTVMVSPVAKTGLKLT-PKKIYSVTCSGSTLGMVI 69
10 -4.620sp|Q8TEY5|CR3L4_HUMAN Cyclic AMP-responsive element-binding protein 3-like protein 4 OS=Homo sapiens GN=CREB3L4 PE=1 SV=1 (Range: 113-188)  ali follow..  7..........AGALERMQGETGPNVGLISIQLDQWSPAFMVPDSCMVSEL............................................................................................................................................................................................................................................................................................................................................. 46

FFAS is supported by the NIH grant R01-GM087218-01
1 2 3 3 5 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;